# Assembly name: ddPopTric1.0.hap1 # Organism name: Populus trichocarpa (black cottonwood) # Isolate: Ptri.A.LA.226.w1 # Taxid: 3694 # BioSample: SAMN29046698 # BioProject: PRJNA887117 # Submitter: UCLA # Date: 2023-02-07 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAPQWO01 # Assembly method: HiFiasm v. 0.16.1-r375; SALSA v. 2.2; purge_dups v. 1.2.5; Rapid curation v. https://gitlab.com/wtsi-grit/rapid-curation (commit 4ddca450) # Expected final version: no # Genome coverage: 52x # Sequencing technology: PacBio Sequel IIe; Dovetail's OmniC; Illumina NovaSeq # GenBank assembly accession: GCA_028534895.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028535155.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JAPQWO010000001.1 <> na Primary Assembly 52164823 na SCAF_10 unplaced-scaffold na na JAPQWO010000010.1 <> na Primary Assembly 18555900 na SCAF_100 unplaced-scaffold na na JAPQWO010000100.1 <> na Primary Assembly 42612 na SCAF_101 unplaced-scaffold na na JAPQWO010000101.1 <> na Primary Assembly 41617 na SCAF_102 unplaced-scaffold na na JAPQWO010000102.1 <> na Primary Assembly 41111 na SCAF_103 unplaced-scaffold na na JAPQWO010000103.1 <> na Primary Assembly 40883 na SCAF_104 unplaced-scaffold na na JAPQWO010000104.1 <> na Primary Assembly 39353 na SCAF_105 unplaced-scaffold na na JAPQWO010000105.1 <> na Primary Assembly 39243 na SCAF_106 unplaced-scaffold na na JAPQWO010000106.1 <> na Primary Assembly 39237 na SCAF_107 unplaced-scaffold na na JAPQWO010000107.1 <> na Primary Assembly 39219 na SCAF_108 unplaced-scaffold na na JAPQWO010000108.1 <> na Primary Assembly 39200 na SCAF_109 unplaced-scaffold na na JAPQWO010000109.1 <> na Primary Assembly 39063 na SCAF_11 unplaced-scaffold na na JAPQWO010000011.1 <> na Primary Assembly 18345217 na SCAF_110 unplaced-scaffold na na JAPQWO010000110.1 <> na Primary Assembly 38981 na SCAF_111 unplaced-scaffold na na JAPQWO010000111.1 <> na Primary Assembly 38221 na SCAF_112 unplaced-scaffold na na JAPQWO010000112.1 <> na Primary Assembly 37873 na SCAF_113 unplaced-scaffold na na JAPQWO010000113.1 <> na Primary Assembly 37711 na SCAF_114 unplaced-scaffold na na JAPQWO010000114.1 <> na Primary Assembly 37013 na SCAF_115 unplaced-scaffold na na JAPQWO010000115.1 <> na Primary Assembly 35781 na SCAF_116 unplaced-scaffold na na JAPQWO010000116.1 <> na Primary Assembly 35749 na SCAF_117 unplaced-scaffold na na JAPQWO010000117.1 <> na Primary Assembly 33862 na SCAF_118 unplaced-scaffold na na JAPQWO010000118.1 <> na Primary Assembly 32657 na SCAF_119 unplaced-scaffold na na JAPQWO010000119.1 <> na Primary Assembly 31877 na SCAF_12 unplaced-scaffold na na JAPQWO010000012.1 <> na Primary Assembly 17096262 na SCAF_120 unplaced-scaffold na na JAPQWO010000120.1 <> na Primary Assembly 31092 na SCAF_121 unplaced-scaffold na na JAPQWO010000121.1 <> na Primary Assembly 31052 na SCAF_122 unplaced-scaffold na na JAPQWO010000122.1 <> na Primary Assembly 30210 na SCAF_123 unplaced-scaffold na na JAPQWO010000123.1 <> na Primary Assembly 27396 na SCAF_124 unplaced-scaffold na na JAPQWO010000124.1 <> na Primary Assembly 21524 na SCAF_125 unplaced-scaffold na na JAPQWO010000125.1 <> na Primary Assembly 21108 na SCAF_126 unplaced-scaffold na na JAPQWO010000126.1 <> na Primary Assembly 20839 na SCAF_127 unplaced-scaffold na na JAPQWO010000127.1 <> na Primary Assembly 19449 na SCAF_128 unplaced-scaffold na na JAPQWO010000128.1 <> na Primary Assembly 18733 na SCAF_129 unplaced-scaffold na na JAPQWO010000129.1 <> na Primary Assembly 17719 na SCAF_13 unplaced-scaffold na na JAPQWO010000013.1 <> na Primary Assembly 16420051 na SCAF_130 unplaced-scaffold na na JAPQWO010000130.1 <> na Primary Assembly 17577 na SCAF_131 unplaced-scaffold na na JAPQWO010000131.1 <> na Primary Assembly 17334 na SCAF_132 unplaced-scaffold na na JAPQWO010000132.1 <> na Primary Assembly 15726 na SCAF_14 unplaced-scaffold na na JAPQWO010000014.1 <> na Primary Assembly 16134272 na SCAF_15 unplaced-scaffold na na JAPQWO010000015.1 <> na Primary Assembly 15860816 na SCAF_16 unplaced-scaffold na na JAPQWO010000016.1 <> na Primary Assembly 15533218 na SCAF_17 unplaced-scaffold na na JAPQWO010000017.1 <> na Primary Assembly 15348892 na SCAF_18 unplaced-scaffold na na JAPQWO010000018.1 <> na Primary Assembly 15270616 na SCAF_19 unplaced-scaffold na na JAPQWO010000019.1 <> na Primary Assembly 14149488 na SCAF_2 unplaced-scaffold na na JAPQWO010000002.1 <> na Primary Assembly 28034488 na SCAF_20 unplaced-scaffold na na JAPQWO010000020.1 <> na Primary Assembly 674300 na SCAF_21 unplaced-scaffold na na JAPQWO010000021.1 <> na Primary Assembly 510782 na SCAF_22 unplaced-scaffold na na JAPQWO010000022.1 <> na Primary Assembly 485688 na SCAF_23 unplaced-scaffold na na JAPQWO010000023.1 <> na Primary Assembly 483506 na SCAF_24 unplaced-scaffold na na JAPQWO010000024.1 <> na Primary Assembly 450369 na SCAF_25 unplaced-scaffold na na JAPQWO010000025.1 <> na Primary Assembly 432093 na SCAF_26 unplaced-scaffold na na JAPQWO010000026.1 <> na Primary Assembly 383764 na SCAF_27 unplaced-scaffold na na JAPQWO010000027.1 <> na Primary Assembly 366784 na SCAF_28 unplaced-scaffold na na JAPQWO010000028.1 <> na Primary Assembly 327446 na SCAF_29 unplaced-scaffold na na JAPQWO010000029.1 <> na Primary Assembly 309610 na SCAF_3 unplaced-scaffold na na JAPQWO010000003.1 <> na Primary Assembly 26001241 na SCAF_30 unplaced-scaffold na na JAPQWO010000030.1 <> na Primary Assembly 308309 na SCAF_31 unplaced-scaffold na na JAPQWO010000031.1 <> na Primary Assembly 306638 na SCAF_32 unplaced-scaffold na na JAPQWO010000032.1 <> na Primary Assembly 304707 na SCAF_33 unplaced-scaffold na na JAPQWO010000033.1 <> na Primary Assembly 298950 na SCAF_34 unplaced-scaffold na na JAPQWO010000034.1 <> na Primary Assembly 276811 na SCAF_35 unplaced-scaffold na na JAPQWO010000035.1 <> na Primary Assembly 269754 na SCAF_36 unplaced-scaffold na na JAPQWO010000036.1 <> na Primary Assembly 268257 na SCAF_37 unplaced-scaffold na na JAPQWO010000037.1 <> na Primary Assembly 255375 na SCAF_38 unplaced-scaffold na na JAPQWO010000038.1 <> na Primary Assembly 254293 na SCAF_39 unplaced-scaffold na na JAPQWO010000039.1 <> na Primary Assembly 246416 na SCAF_4 unplaced-scaffold na na JAPQWO010000004.1 <> na Primary Assembly 25068119 na SCAF_40 unplaced-scaffold na na JAPQWO010000040.1 <> na Primary Assembly 239212 na SCAF_41 unplaced-scaffold na na JAPQWO010000041.1 <> na Primary Assembly 224607 na SCAF_42 unplaced-scaffold na na JAPQWO010000042.1 <> na Primary Assembly 224221 na SCAF_43 unplaced-scaffold na na JAPQWO010000043.1 <> na Primary Assembly 217978 na SCAF_44 unplaced-scaffold na na JAPQWO010000044.1 <> na Primary Assembly 195548 na SCAF_45 unplaced-scaffold na na JAPQWO010000045.1 <> na Primary Assembly 193998 na SCAF_46 unplaced-scaffold na na JAPQWO010000046.1 <> na Primary Assembly 190370 na SCAF_47 unplaced-scaffold na na JAPQWO010000047.1 <> na Primary Assembly 188577 na SCAF_48 unplaced-scaffold na na JAPQWO010000048.1 <> na Primary Assembly 177000 na SCAF_49 unplaced-scaffold na na JAPQWO010000049.1 <> na Primary Assembly 172139 na SCAF_5 unplaced-scaffold na na JAPQWO010000005.1 <> na Primary Assembly 24845927 na SCAF_50 unplaced-scaffold na na JAPQWO010000050.1 <> na Primary Assembly 165022 na SCAF_51 unplaced-scaffold na na JAPQWO010000051.1 <> na Primary Assembly 161988 na SCAF_52 unplaced-scaffold na na JAPQWO010000052.1 <> na Primary Assembly 142943 na SCAF_53 unplaced-scaffold na na JAPQWO010000053.1 <> na Primary Assembly 134249 na SCAF_54 unplaced-scaffold na na JAPQWO010000054.1 <> na Primary Assembly 131709 na SCAF_55 unplaced-scaffold na na JAPQWO010000055.1 <> na Primary Assembly 131003 na SCAF_56 unplaced-scaffold na na JAPQWO010000056.1 <> na Primary Assembly 130605 na SCAF_57 unplaced-scaffold na na JAPQWO010000057.1 <> na Primary Assembly 127008 na SCAF_58 unplaced-scaffold na na JAPQWO010000058.1 <> na Primary Assembly 125209 na SCAF_59 unplaced-scaffold na na JAPQWO010000059.1 <> na Primary Assembly 124768 na SCAF_6 unplaced-scaffold na na JAPQWO010000006.1 <> na Primary Assembly 23592247 na SCAF_60 unplaced-scaffold na na JAPQWO010000060.1 <> na Primary Assembly 118168 na SCAF_61 unplaced-scaffold na na JAPQWO010000061.1 <> na Primary Assembly 118153 na SCAF_62 unplaced-scaffold na na JAPQWO010000062.1 <> na Primary Assembly 114541 na SCAF_63 unplaced-scaffold na na JAPQWO010000063.1 <> na Primary Assembly 110929 na SCAF_64 unplaced-scaffold na na JAPQWO010000064.1 <> na Primary Assembly 105439 na SCAF_65 unplaced-scaffold na na JAPQWO010000065.1 <> na Primary Assembly 103984 na SCAF_66 unplaced-scaffold na na JAPQWO010000066.1 <> na Primary Assembly 102862 na SCAF_67 unplaced-scaffold na na JAPQWO010000067.1 <> na Primary Assembly 97852 na SCAF_68 unplaced-scaffold na na JAPQWO010000068.1 <> na Primary Assembly 95814 na SCAF_69 unplaced-scaffold na na JAPQWO010000069.1 <> na Primary Assembly 95290 na SCAF_7 unplaced-scaffold na na JAPQWO010000007.1 <> na Primary Assembly 23293518 na SCAF_70 unplaced-scaffold na na JAPQWO010000070.1 <> na Primary Assembly 92434 na SCAF_71 unplaced-scaffold na na JAPQWO010000071.1 <> na Primary Assembly 89654 na SCAF_72 unplaced-scaffold na na JAPQWO010000072.1 <> na Primary Assembly 86491 na SCAF_73 unplaced-scaffold na na JAPQWO010000073.1 <> na Primary Assembly 81975 na SCAF_74 unplaced-scaffold na na JAPQWO010000074.1 <> na Primary Assembly 80466 na SCAF_75 unplaced-scaffold na na JAPQWO010000075.1 <> na Primary Assembly 78796 na SCAF_76 unplaced-scaffold na na JAPQWO010000076.1 <> na Primary Assembly 77417 na SCAF_77 unplaced-scaffold na na JAPQWO010000077.1 <> na Primary Assembly 77235 na SCAF_78 unplaced-scaffold na na JAPQWO010000078.1 <> na Primary Assembly 74400 na SCAF_79 unplaced-scaffold na na JAPQWO010000079.1 <> na Primary Assembly 74059 na SCAF_8 unplaced-scaffold na na JAPQWO010000008.1 <> na Primary Assembly 22569475 na SCAF_80 unplaced-scaffold na na JAPQWO010000080.1 <> na Primary Assembly 73939 na SCAF_81 unplaced-scaffold na na JAPQWO010000081.1 <> na Primary Assembly 73837 na SCAF_82 unplaced-scaffold na na JAPQWO010000082.1 <> na Primary Assembly 70986 na SCAF_83 unplaced-scaffold na na JAPQWO010000083.1 <> na Primary Assembly 70556 na SCAF_84 unplaced-scaffold na na JAPQWO010000084.1 <> na Primary Assembly 68580 na SCAF_85 unplaced-scaffold na na JAPQWO010000085.1 <> na Primary Assembly 60181 na SCAF_86 unplaced-scaffold na na JAPQWO010000086.1 <> na Primary Assembly 59122 na SCAF_87 unplaced-scaffold na na JAPQWO010000087.1 <> na Primary Assembly 57695 na SCAF_88 unplaced-scaffold na na JAPQWO010000088.1 <> na Primary Assembly 57551 na SCAF_89 unplaced-scaffold na na JAPQWO010000089.1 <> na Primary Assembly 55941 na SCAF_9 unplaced-scaffold na na JAPQWO010000009.1 <> na Primary Assembly 20950003 na SCAF_90 unplaced-scaffold na na JAPQWO010000090.1 <> na Primary Assembly 55057 na SCAF_91 unplaced-scaffold na na JAPQWO010000091.1 <> na Primary Assembly 54688 na SCAF_92 unplaced-scaffold na na JAPQWO010000092.1 <> na Primary Assembly 53947 na SCAF_93 unplaced-scaffold na na JAPQWO010000093.1 <> na Primary Assembly 53422 na SCAF_94 unplaced-scaffold na na JAPQWO010000094.1 <> na Primary Assembly 50632 na SCAF_95 unplaced-scaffold na na JAPQWO010000095.1 <> na Primary Assembly 50459 na SCAF_96 unplaced-scaffold na na JAPQWO010000096.1 <> na Primary Assembly 47971 na SCAF_97 unplaced-scaffold na na JAPQWO010000097.1 <> na Primary Assembly 46447 na SCAF_98 unplaced-scaffold na na JAPQWO010000098.1 <> na Primary Assembly 43763 na SCAF_99 unplaced-scaffold na na JAPQWO010000099.1 <> na Primary Assembly 43635 na