# Assembly name: dhQueTome1.0.hap2 # Organism name: Quercus tomentella (island oak) # Isolate: RSA801373 # Taxid: 60424 # BioSample: SAMN29046697 # BioProject: PRJNA887122 # Submitter: UCLA # Date: 2023-02-07 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAPQVY01 # Assembly method: HiFiasm v. 0.16.1-r375; SALSA v. 2.2; Rapid curation v. https://gitlab.com/wtsi-grit/rapid-curation (commit 4ddca450) # Expected final version: no # Genome coverage: 40x # Sequencing technology: PacBio Sequel IIe; Dovetail's OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_028535165.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028535705.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_10 unplaced-scaffold na na JAPQVY010000001.1 <> na Primary Assembly 52856462 na SUPER_100 unplaced-scaffold na na JAPQVY010000002.1 <> na Primary Assembly 45486 na SUPER_101 unplaced-scaffold na na JAPQVY010000003.1 <> na Primary Assembly 44763 na SUPER_102 unplaced-scaffold na na JAPQVY010000004.1 <> na Primary Assembly 44351 na SUPER_103 unplaced-scaffold na na JAPQVY010000005.1 <> na Primary Assembly 44289 na SUPER_104 unplaced-scaffold na na JAPQVY010000006.1 <> na Primary Assembly 43829 na SUPER_105 unplaced-scaffold na na JAPQVY010000007.1 <> na Primary Assembly 43794 na SUPER_106 unplaced-scaffold na na JAPQVY010000008.1 <> na Primary Assembly 43679 na SUPER_107 unplaced-scaffold na na JAPQVY010000009.1 <> na Primary Assembly 43588 na SUPER_108 unplaced-scaffold na na JAPQVY010000010.1 <> na Primary Assembly 43383 na SUPER_109 unplaced-scaffold na na JAPQVY010000011.1 <> na Primary Assembly 43318 na SUPER_11 unplaced-scaffold na na JAPQVY010000012.1 <> na Primary Assembly 46373758 na SUPER_110 unplaced-scaffold na na JAPQVY010000013.1 <> na Primary Assembly 42838 na SUPER_111 unplaced-scaffold na na JAPQVY010000014.1 <> na Primary Assembly 42669 na SUPER_112 unplaced-scaffold na na JAPQVY010000015.1 <> na Primary Assembly 42668 na SUPER_113 unplaced-scaffold na na JAPQVY010000016.1 <> na Primary Assembly 42461 na SUPER_114 unplaced-scaffold na na JAPQVY010000017.1 <> na Primary Assembly 41874 na SUPER_115 unplaced-scaffold na na JAPQVY010000018.1 <> na Primary Assembly 41365 na SUPER_116 unplaced-scaffold na na JAPQVY010000019.1 <> na Primary Assembly 41150 na SUPER_117 unplaced-scaffold na na JAPQVY010000020.1 <> na Primary Assembly 40541 na SUPER_118 unplaced-scaffold na na JAPQVY010000021.1 <> na Primary Assembly 39356 na SUPER_119 unplaced-scaffold na na JAPQVY010000022.1 <> na Primary Assembly 39247 na SUPER_12 unplaced-scaffold na na JAPQVY010000023.1 <> na Primary Assembly 40083450 na SUPER_120 unplaced-scaffold na na JAPQVY010000024.1 <> na Primary Assembly 38917 na SUPER_121 unplaced-scaffold na na JAPQVY010000025.1 <> na Primary Assembly 38711 na SUPER_122 unplaced-scaffold na na JAPQVY010000026.1 <> na Primary Assembly 38064 na SUPER_123 unplaced-scaffold na na JAPQVY010000027.1 <> na Primary Assembly 37910 na SUPER_124 unplaced-scaffold na na JAPQVY010000028.1 <> na Primary Assembly 37145 na SUPER_125 unplaced-scaffold na na JAPQVY010000029.1 <> na Primary Assembly 37043 na SUPER_126 unplaced-scaffold na na JAPQVY010000030.1 <> na Primary Assembly 37043 na SUPER_127 unplaced-scaffold na na JAPQVY010000031.1 <> na Primary Assembly 36589 na SUPER_128 unplaced-scaffold na na JAPQVY010000032.1 <> na Primary Assembly 36497 na SUPER_129 unplaced-scaffold na na JAPQVY010000033.1 <> na Primary Assembly 36484 na SUPER_13 unplaced-scaffold na na JAPQVY010000034.1 <> na Primary Assembly 609206 na SUPER_130 unplaced-scaffold na na JAPQVY010000035.1 <> na Primary Assembly 36213 na SUPER_131 unplaced-scaffold na na JAPQVY010000036.1 <> na Primary Assembly 35886 na SUPER_132 unplaced-scaffold na na JAPQVY010000037.1 <> na Primary Assembly 35454 na SUPER_133 unplaced-scaffold na na JAPQVY010000038.1 <> na Primary Assembly 35222 na SUPER_134 unplaced-scaffold na na JAPQVY010000039.1 <> na Primary Assembly 35219 na SUPER_135 unplaced-scaffold na na JAPQVY010000040.1 <> na Primary Assembly 34772 na SUPER_136 unplaced-scaffold na na JAPQVY010000041.1 <> na Primary Assembly 34710 na SUPER_137 unplaced-scaffold na na JAPQVY010000042.1 <> na Primary Assembly 34301 na SUPER_138 unplaced-scaffold na na JAPQVY010000043.1 <> na Primary Assembly 34154 na SUPER_139 unplaced-scaffold na na JAPQVY010000044.1 <> na Primary Assembly 33969 na SUPER_14 unplaced-scaffold na na JAPQVY010000045.1 <> na Primary Assembly 506132 na SUPER_140 unplaced-scaffold na na JAPQVY010000046.1 <> na Primary Assembly 33563 na SUPER_141 unplaced-scaffold na na JAPQVY010000047.1 <> na Primary Assembly 32466 na SUPER_142 unplaced-scaffold na na JAPQVY010000048.1 <> na Primary Assembly 32406 na SUPER_143 unplaced-scaffold na na JAPQVY010000049.1 <> na Primary Assembly 31647 na SUPER_144 unplaced-scaffold na na JAPQVY010000050.1 <> na Primary Assembly 31231 na SUPER_145 unplaced-scaffold na na JAPQVY010000051.1 <> na Primary Assembly 31036 na SUPER_146 unplaced-scaffold na na JAPQVY010000052.1 <> na Primary Assembly 29881 na SUPER_147 unplaced-scaffold na na JAPQVY010000053.1 <> na Primary Assembly 29440 na SUPER_148 unplaced-scaffold na na JAPQVY010000054.1 <> na Primary Assembly 28319 na SUPER_149 unplaced-scaffold na na JAPQVY010000055.1 <> na Primary Assembly 26966 na SUPER_15 unplaced-scaffold na na JAPQVY010000056.1 <> na Primary Assembly 393373 na SUPER_150 unplaced-scaffold na na JAPQVY010000057.1 <> na Primary Assembly 26895 na SUPER_151 unplaced-scaffold na na JAPQVY010000058.1 <> na Primary Assembly 25233 na SUPER_152 unplaced-scaffold na na JAPQVY010000059.1 <> na Primary Assembly 24600 na SUPER_153 unplaced-scaffold na na JAPQVY010000060.1 <> na Primary Assembly 23333 na SUPER_154 unplaced-scaffold na na JAPQVY010000061.1 <> na Primary Assembly 21583 na SUPER_155 unplaced-scaffold na na JAPQVY010000062.1 <> na Primary Assembly 20408 na SUPER_156 unplaced-scaffold na na JAPQVY010000063.1 <> na Primary Assembly 19129 na SUPER_16 unplaced-scaffold na na JAPQVY010000064.1 <> na Primary Assembly 387267 na SUPER_17 unplaced-scaffold na na JAPQVY010000065.1 <> na Primary Assembly 381567 na SUPER_18 unplaced-scaffold na na JAPQVY010000066.1 <> na Primary Assembly 327121 na SUPER_19 unplaced-scaffold na na JAPQVY010000067.1 <> na Primary Assembly 312114 na SUPER_1_MOD unplaced-scaffold na na JAPQVY010000155.1 <> na Primary Assembly 97120727 na SUPER_2 unplaced-scaffold na na JAPQVY010000068.1 <> na Primary Assembly 86491395 na SUPER_20 unplaced-scaffold na na JAPQVY010000069.1 <> na Primary Assembly 275230 na SUPER_21 unplaced-scaffold na na JAPQVY010000070.1 <> na Primary Assembly 246153 na SUPER_22 unplaced-scaffold na na JAPQVY010000071.1 <> na Primary Assembly 229776 na SUPER_23 unplaced-scaffold na na JAPQVY010000072.1 <> na Primary Assembly 204971 na SUPER_24 unplaced-scaffold na na JAPQVY010000073.1 <> na Primary Assembly 198551 na SUPER_25 unplaced-scaffold na na JAPQVY010000074.1 <> na Primary Assembly 186756 na SUPER_26 unplaced-scaffold na na JAPQVY010000075.1 <> na Primary Assembly 184969 na SUPER_27 unplaced-scaffold na na JAPQVY010000076.1 <> na Primary Assembly 177098 na SUPER_28 unplaced-scaffold na na JAPQVY010000077.1 <> na Primary Assembly 175002 na SUPER_29 unplaced-scaffold na na JAPQVY010000078.1 <> na Primary Assembly 166672 na SUPER_30 unplaced-scaffold na na JAPQVY010000079.1 <> na Primary Assembly 161789 na SUPER_31 unplaced-scaffold na na JAPQVY010000080.1 <> na Primary Assembly 160638 na SUPER_32 unplaced-scaffold na na JAPQVY010000081.1 <> na Primary Assembly 157448 na SUPER_33 unplaced-scaffold na na JAPQVY010000082.1 <> na Primary Assembly 157079 na SUPER_34 unplaced-scaffold na na JAPQVY010000083.1 <> na Primary Assembly 156040 na SUPER_35 unplaced-scaffold na na JAPQVY010000084.1 <> na Primary Assembly 143088 na SUPER_36 unplaced-scaffold na na JAPQVY010000085.1 <> na Primary Assembly 142173 na SUPER_37 unplaced-scaffold na na JAPQVY010000086.1 <> na Primary Assembly 140822 na SUPER_38 unplaced-scaffold na na JAPQVY010000087.1 <> na Primary Assembly 138236 na SUPER_39 unplaced-scaffold na na JAPQVY010000088.1 <> na Primary Assembly 135814 na SUPER_3_MOD unplaced-scaffold na na JAPQVY010000156.1 <> na Primary Assembly 83870147 na SUPER_4 unplaced-scaffold na na JAPQVY010000089.1 <> na Primary Assembly 66728985 na SUPER_40 unplaced-scaffold na na JAPQVY010000090.1 <> na Primary Assembly 135524 na SUPER_41 unplaced-scaffold na na JAPQVY010000091.1 <> na Primary Assembly 121243 na SUPER_42 unplaced-scaffold na na JAPQVY010000092.1 <> na Primary Assembly 117023 na SUPER_43 unplaced-scaffold na na JAPQVY010000093.1 <> na Primary Assembly 113040 na SUPER_44 unplaced-scaffold na na JAPQVY010000094.1 <> na Primary Assembly 101965 na SUPER_45 unplaced-scaffold na na JAPQVY010000095.1 <> na Primary Assembly 100404 na SUPER_46 unplaced-scaffold na na JAPQVY010000096.1 <> na Primary Assembly 97931 na SUPER_47 unplaced-scaffold na na JAPQVY010000097.1 <> na Primary Assembly 96924 na SUPER_48 unplaced-scaffold na na JAPQVY010000098.1 <> na Primary Assembly 94005 na SUPER_49 unplaced-scaffold na na JAPQVY010000099.1 <> na Primary Assembly 88543 na SUPER_5 unplaced-scaffold na na JAPQVY010000100.1 <> na Primary Assembly 63372236 na SUPER_50 unplaced-scaffold na na JAPQVY010000101.1 <> na Primary Assembly 88517 na SUPER_51 unplaced-scaffold na na JAPQVY010000102.1 <> na Primary Assembly 87083 na SUPER_52 unplaced-scaffold na na JAPQVY010000103.1 <> na Primary Assembly 86862 na SUPER_53 unplaced-scaffold na na JAPQVY010000104.1 <> na Primary Assembly 86302 na SUPER_54 unplaced-scaffold na na JAPQVY010000105.1 <> na Primary Assembly 84190 na SUPER_55 unplaced-scaffold na na JAPQVY010000106.1 <> na Primary Assembly 83902 na SUPER_56 unplaced-scaffold na na JAPQVY010000107.1 <> na Primary Assembly 82147 na SUPER_57 unplaced-scaffold na na JAPQVY010000108.1 <> na Primary Assembly 81607 na SUPER_58 unplaced-scaffold na na JAPQVY010000109.1 <> na Primary Assembly 79373 na SUPER_59 unplaced-scaffold na na JAPQVY010000110.1 <> na Primary Assembly 78851 na SUPER_6 unplaced-scaffold na na JAPQVY010000111.1 <> na Primary Assembly 58211289 na SUPER_60 unplaced-scaffold na na JAPQVY010000112.1 <> na Primary Assembly 78644 na SUPER_61 unplaced-scaffold na na JAPQVY010000113.1 <> na Primary Assembly 78090 na SUPER_62 unplaced-scaffold na na JAPQVY010000114.1 <> na Primary Assembly 72883 na SUPER_63 unplaced-scaffold na na JAPQVY010000115.1 <> na Primary Assembly 71269 na SUPER_64 unplaced-scaffold na na JAPQVY010000116.1 <> na Primary Assembly 70909 na SUPER_65 unplaced-scaffold na na JAPQVY010000117.1 <> na Primary Assembly 70285 na SUPER_66 unplaced-scaffold na na JAPQVY010000118.1 <> na Primary Assembly 69260 na SUPER_67 unplaced-scaffold na na JAPQVY010000119.1 <> na Primary Assembly 68846 na SUPER_68 unplaced-scaffold na na JAPQVY010000120.1 <> na Primary Assembly 67122 na SUPER_69 unplaced-scaffold na na JAPQVY010000121.1 <> na Primary Assembly 66675 na SUPER_7 unplaced-scaffold na na JAPQVY010000122.1 <> na Primary Assembly 57557717 na SUPER_70 unplaced-scaffold na na JAPQVY010000123.1 <> na Primary Assembly 65748 na SUPER_71 unplaced-scaffold na na JAPQVY010000124.1 <> na Primary Assembly 65304 na SUPER_72 unplaced-scaffold na na JAPQVY010000125.1 <> na Primary Assembly 64874 na SUPER_73 unplaced-scaffold na na JAPQVY010000126.1 <> na Primary Assembly 64657 na SUPER_74 unplaced-scaffold na na JAPQVY010000127.1 <> na Primary Assembly 64340 na SUPER_75 unplaced-scaffold na na JAPQVY010000128.1 <> na Primary Assembly 62679 na SUPER_76 unplaced-scaffold na na JAPQVY010000129.1 <> na Primary Assembly 62033 na SUPER_77 unplaced-scaffold na na JAPQVY010000130.1 <> na Primary Assembly 61996 na SUPER_78 unplaced-scaffold na na JAPQVY010000131.1 <> na Primary Assembly 61666 na SUPER_79 unplaced-scaffold na na JAPQVY010000132.1 <> na Primary Assembly 60782 na SUPER_8 unplaced-scaffold na na JAPQVY010000133.1 <> na Primary Assembly 54807038 na SUPER_80 unplaced-scaffold na na JAPQVY010000134.1 <> na Primary Assembly 59949 na SUPER_81 unplaced-scaffold na na JAPQVY010000135.1 <> na Primary Assembly 58718 na SUPER_82 unplaced-scaffold na na JAPQVY010000136.1 <> na Primary Assembly 58057 na SUPER_83 unplaced-scaffold na na JAPQVY010000137.1 <> na Primary Assembly 57912 na SUPER_84 unplaced-scaffold na na JAPQVY010000138.1 <> na Primary Assembly 57193 na SUPER_85 unplaced-scaffold na na JAPQVY010000139.1 <> na Primary Assembly 55736 na SUPER_86 unplaced-scaffold na na JAPQVY010000140.1 <> na Primary Assembly 55275 na SUPER_87 unplaced-scaffold na na JAPQVY010000141.1 <> na Primary Assembly 54911 na SUPER_88 unplaced-scaffold na na JAPQVY010000142.1 <> na Primary Assembly 54797 na SUPER_89 unplaced-scaffold na na JAPQVY010000143.1 <> na Primary Assembly 54504 na SUPER_9 unplaced-scaffold na na JAPQVY010000144.1 <> na Primary Assembly 54590447 na SUPER_90 unplaced-scaffold na na JAPQVY010000145.1 <> na Primary Assembly 54321 na SUPER_91 unplaced-scaffold na na JAPQVY010000146.1 <> na Primary Assembly 54074 na SUPER_92 unplaced-scaffold na na JAPQVY010000147.1 <> na Primary Assembly 52600 na SUPER_93 unplaced-scaffold na na JAPQVY010000148.1 <> na Primary Assembly 51156 na SUPER_94 unplaced-scaffold na na JAPQVY010000149.1 <> na Primary Assembly 49857 na SUPER_95 unplaced-scaffold na na JAPQVY010000150.1 <> na Primary Assembly 49812 na SUPER_96 unplaced-scaffold na na JAPQVY010000151.1 <> na Primary Assembly 48483 na SUPER_97 unplaced-scaffold na na JAPQVY010000152.1 <> na Primary Assembly 48389 na SUPER_98 unplaced-scaffold na na JAPQVY010000153.1 <> na Primary Assembly 46084 na SUPER_99 unplaced-scaffold na na JAPQVY010000154.1 <> na Primary Assembly 45830 na