This track displays simple tandem repeats (possibly imperfect repeats) on the 07 Feb 2023 Aphelocoma californica/GCA_028536675.1_bAphCal1.0.hap1/GCA_028536675.1 genome assembly, located by Tandem Repeats Finder (TRF) which is specialized for this purpose. These repeats can occur within coding regions of genes and may be quite polymorphic. Repeat expansions are sometimes associated with specific diseases.
There are 505,129 items in the track covering 87,954,100 bases, assembly size 1,348,500,425 bases, percent coverage % 6.52.For more information about the TRF program, see Benson (1999).
TRF was written by Gary Benson.
Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 1999 Jan 15;27(2):573-80. PMID: 9862982; PMC: PMC148217
This track was generated using a modification of a program developed by G. Miklem and L. Hillier (unpublished).
Gardiner-Garden M, Frommer M. CpG islands in vertebrate genomes. J Mol Biol. 1987 Jul 20;196(2):261-82. PMID: 3656447