# Assembly name: dmUmbCali1.0.hap2 # Organism name: Umbellularia californica (California bay) # Infraspecific name: ecotype=USA: Berkeley, California var. californica # Isolate: CCGP_DODD_UMBCAL_S1 # Taxid: 3438 # BioSample: SAMN30524115 # BioProject: PRJNA887119 # Submitter: UCLA # Date: 2023-02-07 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JAPQWN01 # Assembly method: HiFiasm v. 0.16.1-r375; SALSA v. 2.2; Rapid curation v. https://gitlab.com/wtsi-grit/rapid-curation (commit 4ddca450) # Expected final version: no # Genome coverage: 67x # Sequencing technology: PacBio Sequel IIe; Dovetail's OmniC; Illumina NovaSeq # RefSeq category: Representative Genome # GenBank assembly accession: GCA_028538565.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028538905.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SCAF_1 unplaced-scaffold na na JAPQWN010000001.1 <> na Primary Assembly 113760518 na SCAF_10 unplaced-scaffold na na JAPQWN010000010.1 <> na Primary Assembly 58069089 na SCAF_100 unplaced-scaffold na na JAPQWN010000100.1 <> na Primary Assembly 54796 na SCAF_101 unplaced-scaffold na na JAPQWN010000101.1 <> na Primary Assembly 54555 na SCAF_102 unplaced-scaffold na na JAPQWN010000102.1 <> na Primary Assembly 54550 na SCAF_103 unplaced-scaffold na na JAPQWN010000103.1 <> na Primary Assembly 53034 na SCAF_104 unplaced-scaffold na na JAPQWN010000104.1 <> na Primary Assembly 52739 na SCAF_105 unplaced-scaffold na na JAPQWN010000105.1 <> na Primary Assembly 52510 na SCAF_106 unplaced-scaffold na na JAPQWN010000106.1 <> na Primary Assembly 52041 na SCAF_107 unplaced-scaffold na na JAPQWN010000107.1 <> na Primary Assembly 51938 na SCAF_108 unplaced-scaffold na na JAPQWN010000108.1 <> na Primary Assembly 50872 na SCAF_109 unplaced-scaffold na na JAPQWN010000109.1 <> na Primary Assembly 50540 na SCAF_11 unplaced-scaffold na na JAPQWN010000011.1 <> na Primary Assembly 54146165 na SCAF_110 unplaced-scaffold na na JAPQWN010000110.1 <> na Primary Assembly 48734 na SCAF_111 unplaced-scaffold na na JAPQWN010000111.1 <> na Primary Assembly 48333 na SCAF_112 unplaced-scaffold na na JAPQWN010000112.1 <> na Primary Assembly 46789 na SCAF_113 unplaced-scaffold na na JAPQWN010000113.1 <> na Primary Assembly 46458 na SCAF_114 unplaced-scaffold na na JAPQWN010000114.1 <> na Primary Assembly 46435 na SCAF_115 unplaced-scaffold na na JAPQWN010000115.1 <> na Primary Assembly 46329 na SCAF_116 unplaced-scaffold na na JAPQWN010000116.1 <> na Primary Assembly 45174 na SCAF_117 unplaced-scaffold na na JAPQWN010000117.1 <> na Primary Assembly 44348 na SCAF_118 unplaced-scaffold na na JAPQWN010000118.1 <> na Primary Assembly 44205 na SCAF_119 unplaced-scaffold na na JAPQWN010000119.1 <> na Primary Assembly 43681 na SCAF_12 unplaced-scaffold na na JAPQWN010000012.1 <> na Primary Assembly 51753874 na SCAF_120 unplaced-scaffold na na JAPQWN010000120.1 <> na Primary Assembly 43385 na SCAF_121 unplaced-scaffold na na JAPQWN010000121.1 <> na Primary Assembly 43265 na SCAF_122 unplaced-scaffold na na JAPQWN010000122.1 <> na Primary Assembly 42789 na SCAF_123 unplaced-scaffold na na JAPQWN010000123.1 <> na Primary Assembly 42749 na SCAF_124 unplaced-scaffold na na JAPQWN010000124.1 <> na Primary Assembly 42589 na SCAF_125 unplaced-scaffold na na JAPQWN010000125.1 <> na Primary Assembly 42372 na SCAF_126 unplaced-scaffold na na JAPQWN010000126.1 <> na Primary Assembly 42135 na SCAF_127 unplaced-scaffold na na JAPQWN010000127.1 <> na Primary Assembly 42057 na SCAF_128 unplaced-scaffold na na JAPQWN010000128.1 <> na Primary Assembly 41640 na SCAF_129 unplaced-scaffold na na JAPQWN010000129.1 <> na Primary Assembly 41603 na SCAF_13 unplaced-scaffold na na JAPQWN010000013.1 <> na Primary Assembly 1256107 na SCAF_130 unplaced-scaffold na na JAPQWN010000130.1 <> na Primary Assembly 41356 na SCAF_131 unplaced-scaffold na na JAPQWN010000131.1 <> na Primary Assembly 40273 na SCAF_132 unplaced-scaffold na na JAPQWN010000132.1 <> na Primary Assembly 39328 na SCAF_133 unplaced-scaffold na na JAPQWN010000133.1 <> na Primary Assembly 39238 na SCAF_134 unplaced-scaffold na na JAPQWN010000134.1 <> na Primary Assembly 39197 na SCAF_135 unplaced-scaffold na na JAPQWN010000135.1 <> na Primary Assembly 37953 na SCAF_136 unplaced-scaffold na na JAPQWN010000136.1 <> na Primary Assembly 37473 na SCAF_137 unplaced-scaffold na na JAPQWN010000137.1 <> na Primary Assembly 37196 na SCAF_138 unplaced-scaffold na na JAPQWN010000138.1 <> na Primary Assembly 37046 na SCAF_139 unplaced-scaffold na na JAPQWN010000139.1 <> na Primary Assembly 36784 na SCAF_14 unplaced-scaffold na na JAPQWN010000014.1 <> na Primary Assembly 645718 na SCAF_140 unplaced-scaffold na na JAPQWN010000140.1 <> na Primary Assembly 34434 na SCAF_141 unplaced-scaffold na na JAPQWN010000141.1 <> na Primary Assembly 33600 na SCAF_142 unplaced-scaffold na na JAPQWN010000142.1 <> na Primary Assembly 33513 na SCAF_143 unplaced-scaffold na na JAPQWN010000143.1 <> na Primary Assembly 33217 na SCAF_144 unplaced-scaffold na na JAPQWN010000144.1 <> na Primary Assembly 32642 na SCAF_145 unplaced-scaffold na na JAPQWN010000145.1 <> na Primary Assembly 32244 na SCAF_146 unplaced-scaffold na na JAPQWN010000146.1 <> na Primary Assembly 32143 na SCAF_147 unplaced-scaffold na na JAPQWN010000147.1 <> na Primary Assembly 31815 na SCAF_148 unplaced-scaffold na na JAPQWN010000148.1 <> na Primary Assembly 31706 na SCAF_149 unplaced-scaffold na na JAPQWN010000149.1 <> na Primary Assembly 31689 na SCAF_15 unplaced-scaffold na na JAPQWN010000015.1 <> na Primary Assembly 547575 na SCAF_150 unplaced-scaffold na na JAPQWN010000150.1 <> na Primary Assembly 31350 na SCAF_151 unplaced-scaffold na na JAPQWN010000151.1 <> na Primary Assembly 31132 na SCAF_152 unplaced-scaffold na na JAPQWN010000152.1 <> na Primary Assembly 30793 na SCAF_153 unplaced-scaffold na na JAPQWN010000153.1 <> na Primary Assembly 30543 na SCAF_154 unplaced-scaffold na na JAPQWN010000154.1 <> na Primary Assembly 30282 na SCAF_155 unplaced-scaffold na na JAPQWN010000155.1 <> na Primary Assembly 29930 na SCAF_156 unplaced-scaffold na na JAPQWN010000156.1 <> na Primary Assembly 29907 na SCAF_157 unplaced-scaffold na na JAPQWN010000157.1 <> na Primary Assembly 29840 na SCAF_158 unplaced-scaffold na na JAPQWN010000158.1 <> na Primary Assembly 29150 na SCAF_159 unplaced-scaffold na na JAPQWN010000159.1 <> na Primary Assembly 28665 na SCAF_16 unplaced-scaffold na na JAPQWN010000016.1 <> na Primary Assembly 522832 na SCAF_160 unplaced-scaffold na na JAPQWN010000160.1 <> na Primary Assembly 27771 na SCAF_161 unplaced-scaffold na na JAPQWN010000161.1 <> na Primary Assembly 27746 na SCAF_162 unplaced-scaffold na na JAPQWN010000162.1 <> na Primary Assembly 27672 na SCAF_163 unplaced-scaffold na na JAPQWN010000163.1 <> na Primary Assembly 27177 na SCAF_164 unplaced-scaffold na na JAPQWN010000164.1 <> na Primary Assembly 26835 na SCAF_165 unplaced-scaffold na na JAPQWN010000165.1 <> na Primary Assembly 26780 na SCAF_166 unplaced-scaffold na na JAPQWN010000166.1 <> na Primary Assembly 26640 na SCAF_167 unplaced-scaffold na na JAPQWN010000167.1 <> na Primary Assembly 26462 na SCAF_168 unplaced-scaffold na na JAPQWN010000168.1 <> na Primary Assembly 26110 na SCAF_169 unplaced-scaffold na na JAPQWN010000169.1 <> na Primary Assembly 25613 na SCAF_17 unplaced-scaffold na na JAPQWN010000017.1 <> na Primary Assembly 411469 na SCAF_170 unplaced-scaffold na na JAPQWN010000170.1 <> na Primary Assembly 25381 na SCAF_171 unplaced-scaffold na na JAPQWN010000171.1 <> na Primary Assembly 25109 na SCAF_172 unplaced-scaffold na na JAPQWN010000172.1 <> na Primary Assembly 25040 na SCAF_173 unplaced-scaffold na na JAPQWN010000173.1 <> na Primary Assembly 24988 na SCAF_174 unplaced-scaffold na na JAPQWN010000174.1 <> na Primary Assembly 24956 na SCAF_175 unplaced-scaffold na na JAPQWN010000175.1 <> na Primary Assembly 24933 na SCAF_176 unplaced-scaffold na na JAPQWN010000176.1 <> na Primary Assembly 24613 na SCAF_177 unplaced-scaffold na na JAPQWN010000177.1 <> na Primary Assembly 24172 na SCAF_178 unplaced-scaffold na na JAPQWN010000178.1 <> na Primary Assembly 24013 na SCAF_179 unplaced-scaffold na na JAPQWN010000179.1 <> na Primary Assembly 23769 na SCAF_18 unplaced-scaffold na na JAPQWN010000018.1 <> na Primary Assembly 383614 na SCAF_180 unplaced-scaffold na na JAPQWN010000180.1 <> na Primary Assembly 23476 na SCAF_181 unplaced-scaffold na na JAPQWN010000181.1 <> na Primary Assembly 23409 na SCAF_182 unplaced-scaffold na na JAPQWN010000182.1 <> na Primary Assembly 23287 na SCAF_183 unplaced-scaffold na na JAPQWN010000183.1 <> na Primary Assembly 23209 na SCAF_184 unplaced-scaffold na na JAPQWN010000184.1 <> na Primary Assembly 23044 na SCAF_185 unplaced-scaffold na na JAPQWN010000185.1 <> na Primary Assembly 22879 na SCAF_186 unplaced-scaffold na na JAPQWN010000186.1 <> na Primary Assembly 22057 na SCAF_187 unplaced-scaffold na na JAPQWN010000187.1 <> na Primary Assembly 21566 na SCAF_188 unplaced-scaffold na na JAPQWN010000188.1 <> na Primary Assembly 21114 na SCAF_189 unplaced-scaffold na na JAPQWN010000189.1 <> na Primary Assembly 20965 na SCAF_19 unplaced-scaffold na na JAPQWN010000019.1 <> na Primary Assembly 301943 na SCAF_190 unplaced-scaffold na na JAPQWN010000190.1 <> na Primary Assembly 19028 na SCAF_191 unplaced-scaffold na na JAPQWN010000191.1 <> na Primary Assembly 17488 na SCAF_192 unplaced-scaffold na na JAPQWN010000192.1 <> na Primary Assembly 17205 na SCAF_193 unplaced-scaffold na na JAPQWN010000193.1 <> na Primary Assembly 16600 na SCAF_194 unplaced-scaffold na na JAPQWN010000194.1 <> na Primary Assembly 16491 na SCAF_195 unplaced-scaffold na na JAPQWN010000195.1 <> na Primary Assembly 15685 na SCAF_196 unplaced-scaffold na na JAPQWN010000196.1 <> na Primary Assembly 15370 na SCAF_197 unplaced-scaffold na na JAPQWN010000197.1 <> na Primary Assembly 11938 na SCAF_2 unplaced-scaffold na na JAPQWN010000002.1 <> na Primary Assembly 105270473 na SCAF_20 unplaced-scaffold na na JAPQWN010000020.1 <> na Primary Assembly 299558 na SCAF_21 unplaced-scaffold na na JAPQWN010000021.1 <> na Primary Assembly 280339 na SCAF_22 unplaced-scaffold na na JAPQWN010000022.1 <> na Primary Assembly 253705 na SCAF_23 unplaced-scaffold na na JAPQWN010000023.1 <> na Primary Assembly 252887 na SCAF_24 unplaced-scaffold na na JAPQWN010000024.1 <> na Primary Assembly 248391 na SCAF_25 unplaced-scaffold na na JAPQWN010000025.1 <> na Primary Assembly 227115 na SCAF_26 unplaced-scaffold na na JAPQWN010000026.1 <> na Primary Assembly 218137 na SCAF_27 unplaced-scaffold na na JAPQWN010000027.1 <> na Primary Assembly 217020 na SCAF_28 unplaced-scaffold na na JAPQWN010000028.1 <> na Primary Assembly 216412 na SCAF_29 unplaced-scaffold na na JAPQWN010000029.1 <> na Primary Assembly 210729 na SCAF_3 unplaced-scaffold na na JAPQWN010000003.1 <> na Primary Assembly 103954106 na SCAF_30 unplaced-scaffold na na JAPQWN010000030.1 <> na Primary Assembly 203055 na SCAF_31 unplaced-scaffold na na JAPQWN010000031.1 <> na Primary Assembly 199482 na SCAF_32 unplaced-scaffold na na JAPQWN010000032.1 <> na Primary Assembly 199119 na SCAF_33 unplaced-scaffold na na JAPQWN010000033.1 <> na Primary Assembly 192654 na SCAF_34 unplaced-scaffold na na JAPQWN010000034.1 <> na Primary Assembly 192537 na SCAF_35 unplaced-scaffold na na JAPQWN010000035.1 <> na Primary Assembly 178207 na SCAF_36 unplaced-scaffold na na JAPQWN010000036.1 <> na Primary Assembly 176537 na SCAF_37 unplaced-scaffold na na JAPQWN010000037.1 <> na Primary Assembly 172615 na SCAF_38 unplaced-scaffold na na JAPQWN010000038.1 <> na Primary Assembly 167986 na SCAF_39 unplaced-scaffold na na JAPQWN010000039.1 <> na Primary Assembly 166218 na SCAF_4 unplaced-scaffold na na JAPQWN010000004.1 <> na Primary Assembly 86433879 na SCAF_40 unplaced-scaffold na na JAPQWN010000040.1 <> na Primary Assembly 161279 na SCAF_41 unplaced-scaffold na na JAPQWN010000041.1 <> na Primary Assembly 160041 na SCAF_42 unplaced-scaffold na na JAPQWN010000042.1 <> na Primary Assembly 156849 na SCAF_43 unplaced-scaffold na na JAPQWN010000043.1 <> na Primary Assembly 149909 na SCAF_44 unplaced-scaffold na na JAPQWN010000044.1 <> na Primary Assembly 147273 na SCAF_45 unplaced-scaffold na na JAPQWN010000045.1 <> na Primary Assembly 147190 na SCAF_46 unplaced-scaffold na na JAPQWN010000046.1 <> na Primary Assembly 146004 na SCAF_47 unplaced-scaffold na na JAPQWN010000047.1 <> na Primary Assembly 142717 na SCAF_48 unplaced-scaffold na na JAPQWN010000048.1 <> na Primary Assembly 140540 na SCAF_49 unplaced-scaffold na na JAPQWN010000049.1 <> na Primary Assembly 140026 na SCAF_5 unplaced-scaffold na na JAPQWN010000005.1 <> na Primary Assembly 81930662 na SCAF_50 unplaced-scaffold na na JAPQWN010000050.1 <> na Primary Assembly 137928 na SCAF_51 unplaced-scaffold na na JAPQWN010000051.1 <> na Primary Assembly 137249 na SCAF_52 unplaced-scaffold na na JAPQWN010000052.1 <> na Primary Assembly 132411 na SCAF_53 unplaced-scaffold na na JAPQWN010000053.1 <> na Primary Assembly 129823 na SCAF_54 unplaced-scaffold na na JAPQWN010000054.1 <> na Primary Assembly 129526 na SCAF_55 unplaced-scaffold na na JAPQWN010000055.1 <> na Primary Assembly 122648 na SCAF_56 unplaced-scaffold na na JAPQWN010000056.1 <> na Primary Assembly 122014 na SCAF_57 unplaced-scaffold na na JAPQWN010000057.1 <> na Primary Assembly 121957 na SCAF_58 unplaced-scaffold na na JAPQWN010000058.1 <> na Primary Assembly 118222 na SCAF_59 unplaced-scaffold na na JAPQWN010000059.1 <> na Primary Assembly 107267 na SCAF_6 unplaced-scaffold na na JAPQWN010000006.1 <> na Primary Assembly 81506029 na SCAF_60 unplaced-scaffold na na JAPQWN010000060.1 <> na Primary Assembly 106680 na SCAF_61 unplaced-scaffold na na JAPQWN010000061.1 <> na Primary Assembly 104303 na SCAF_62 unplaced-scaffold na na JAPQWN010000062.1 <> na Primary Assembly 103238 na SCAF_63 unplaced-scaffold na na JAPQWN010000063.1 <> na Primary Assembly 102329 na SCAF_64 unplaced-scaffold na na JAPQWN010000064.1 <> na Primary Assembly 95510 na SCAF_65 unplaced-scaffold na na JAPQWN010000065.1 <> na Primary Assembly 94849 na SCAF_66 unplaced-scaffold na na JAPQWN010000066.1 <> na Primary Assembly 94835 na SCAF_67 unplaced-scaffold na na JAPQWN010000067.1 <> na Primary Assembly 90140 na SCAF_68 unplaced-scaffold na na JAPQWN010000068.1 <> na Primary Assembly 88997 na SCAF_69 unplaced-scaffold na na JAPQWN010000069.1 <> na Primary Assembly 87640 na SCAF_7 unplaced-scaffold na na JAPQWN010000007.1 <> na Primary Assembly 75649680 na SCAF_70 unplaced-scaffold na na JAPQWN010000070.1 <> na Primary Assembly 87423 na SCAF_71 unplaced-scaffold na na JAPQWN010000071.1 <> na Primary Assembly 86724 na SCAF_72 unplaced-scaffold na na JAPQWN010000072.1 <> na Primary Assembly 86394 na SCAF_73 unplaced-scaffold na na JAPQWN010000073.1 <> na Primary Assembly 84406 na SCAF_74 unplaced-scaffold na na JAPQWN010000074.1 <> na Primary Assembly 81296 na SCAF_75 unplaced-scaffold na na JAPQWN010000075.1 <> na Primary Assembly 80437 na SCAF_76 unplaced-scaffold na na JAPQWN010000076.1 <> na Primary Assembly 78797 na SCAF_77 unplaced-scaffold na na JAPQWN010000077.1 <> na Primary Assembly 77821 na SCAF_78 unplaced-scaffold na na JAPQWN010000078.1 <> na Primary Assembly 77197 na SCAF_79 unplaced-scaffold na na JAPQWN010000079.1 <> na Primary Assembly 76019 na SCAF_8 unplaced-scaffold na na JAPQWN010000008.1 <> na Primary Assembly 70184989 na SCAF_80 unplaced-scaffold na na JAPQWN010000080.1 <> na Primary Assembly 75468 na SCAF_81 unplaced-scaffold na na JAPQWN010000081.1 <> na Primary Assembly 73564 na SCAF_82 unplaced-scaffold na na JAPQWN010000082.1 <> na Primary Assembly 73532 na SCAF_83 unplaced-scaffold na na JAPQWN010000083.1 <> na Primary Assembly 73014 na SCAF_84 unplaced-scaffold na na JAPQWN010000084.1 <> na Primary Assembly 72309 na SCAF_85 unplaced-scaffold na na JAPQWN010000085.1 <> na Primary Assembly 68397 na SCAF_86 unplaced-scaffold na na JAPQWN010000086.1 <> na Primary Assembly 65162 na SCAF_87 unplaced-scaffold na na JAPQWN010000087.1 <> na Primary Assembly 65080 na SCAF_88 unplaced-scaffold na na JAPQWN010000088.1 <> na Primary Assembly 64936 na SCAF_89 unplaced-scaffold na na JAPQWN010000089.1 <> na Primary Assembly 64827 na SCAF_9 unplaced-scaffold na na JAPQWN010000009.1 <> na Primary Assembly 59450017 na SCAF_90 unplaced-scaffold na na JAPQWN010000090.1 <> na Primary Assembly 64751 na SCAF_91 unplaced-scaffold na na JAPQWN010000091.1 <> na Primary Assembly 63901 na SCAF_92 unplaced-scaffold na na JAPQWN010000092.1 <> na Primary Assembly 63493 na SCAF_93 unplaced-scaffold na na JAPQWN010000093.1 <> na Primary Assembly 60287 na SCAF_94 unplaced-scaffold na na JAPQWN010000094.1 <> na Primary Assembly 57443 na SCAF_95 unplaced-scaffold na na JAPQWN010000095.1 <> na Primary Assembly 57354 na SCAF_96 unplaced-scaffold na na JAPQWN010000096.1 <> na Primary Assembly 57075 na SCAF_97 unplaced-scaffold na na JAPQWN010000097.1 <> na Primary Assembly 56474 na SCAF_98 unplaced-scaffold na na JAPQWN010000098.1 <> na Primary Assembly 55452 na SCAF_99 unplaced-scaffold na na JAPQWN010000099.1 <> na Primary Assembly 55246 na