Share this genome browser with the link:  https://http_host/h/GCA_028564925.1  
Common name: wood frog
Taxonomic name: Lithobates sylvaticus, taxonomy ID: 45438
Sequencing/Assembly provider ID: G10K
Assembly date: 09 Feb 2023
Assembly type: haploid
Assembly level: Chromosome
Biosample: SAMN32099673
Assembly accession ID: GCA_028564925.1
Assembly FASTA FTP location at NCBI: GCA/028/564/925/GCA_028564925.1_aRanSyl1.merge
Total assembly nucleotides: 5,150,352,190
Assembly contig count: 4,861
N50 size: 611,110,003

Data file downloads

• GCA_028564925.1.fa.gz fasta sequence with NCBI GenBank sequence names
• GCA_028564925.1.2bit UCSC 2bit sequence file with NCBI GenBank sequence names
• GCA_028564925.1.chromAlias.txt chromAlias file to relate chromosome names
• explore the hub directory at: hgdownload.soe.ucsc.edu/hubs/GCA/028/564/925/GCA_028564925.1/

Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Copy this entire assembly hub for local use

This download is only for the purpose of using this assembly hub in your institution which may have firewall access restrictions to this data.
To download this assembly data, use this rsync command:

  rsync -a -P \
    rsync://hgdownload.soe.ucsc.edu/hubs/GCA/028/564/925/GCA_028564925.1/ \
      ./GCA_028564925.1/

  wget --timestamping -m -nH -x --cut-dirs=6 -e robots=off -np -k \
    --reject "index.html*" -P "GCA_028564925.1" \
       https://hgdownload.soe.ucsc.edu/hubs/GCA/028/564/925/GCA_028564925.1/

There is an included hub.txt file in that download data directory to use for your local track hub instance.
Using the genome browser menus: My Data -> Track Hubs
select the My Hubs tab to enter a URL to this hub.txt file to attach this assembly hub to a genome browser.

The html/GCA_028564925.1_aRanSyl1.merge.description.html page is information for your users to describe this assembly.
This web page with these instructions is an instance of the html/GCA_028564925.1_aRanSyl1.merge.description.html file.

See also: track hub help documentation.

At this time, this genome size: 5,150,352,190, is too large (greater than 4294967296), to function with the UCSC blat system. We hope to have improvements to that system in the future to allow blat service for the larger genome sizes.

Search the assembly:

• By position or search term: Use the "position or search term" box to find areas of the genome associated with many different attributes, such as a specific chromosomal coordinate range; mRNA, EST, or STS marker names; or keywords from the GenBank description of an mRNA. More information, including sample queries.
• By gene name: Type a gene name into the "search term" box, choose your gene from the drop-down list, then press "submit" to go directly to the assembly location associated with that gene. More information.
• By track type: Click the "track search" button to find Genome Browser tracks that match specific selection criteria. More information.