# Assembly name: mPumCon1.1.hap1 # Organism name: Puma concolor (puma) # Isolate: L17-30 # Sex: male # Taxid: 9696 # BioSample: SAMN30567381 # BioProject: PRJNA887115 # Submitter: UCLA # Date: 2023-08-04 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAQJVZ02 # Assembly method: HiFiasm v. 0.16.1-r375; SALSA v. 2; Rapid curation v. 0.16.1-r375 # Expected final version: No # Reference guided assembly: GCF_018350175.1 # Genome coverage: 46x # Sequencing technology: Illumina NovaSeq; Dovetail OmniC; PacBio Sequel II; PacBio Sequel IIe # GenBank assembly accession: GCA_028749985.4 # Linked assembly: GCA_028749965.4 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_028749995.4 Primary Assembly ## GCA_028750005.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome_A1 assembled-molecule A1 Chromosome CM060204.1 <> na Primary Assembly 242276767 na Chromosome_A2 assembled-molecule A2 Chromosome CM060205.1 <> na Primary Assembly 171309802 na Chromosome_A3 assembled-molecule A3 Chromosome CM060206.1 <> na Primary Assembly 141001161 na Chromosome_B1 assembled-molecule B1 Chromosome CM060207.1 <> na Primary Assembly 205005933 na Chromosome_B2 assembled-molecule B2 Chromosome CM060208.1 <> na Primary Assembly 154065900 na Chromosome_B3 assembled-molecule B3 Chromosome CM060209.1 <> na Primary Assembly 149756039 na Chromosome_B4 assembled-molecule B4 Chromosome CM060210.1 <> na Primary Assembly 142761461 na Chromosome_C1 assembled-molecule C1 Chromosome CM060211.1 <> na Primary Assembly 222788730 na Chromosome_C2 assembled-molecule C2 Chromosome CM060212.1 <> na Primary Assembly 160451960 na Chromosome_D1 assembled-molecule D1 Chromosome CM060213.1 <> na Primary Assembly 117746671 na Chromosome_D2 assembled-molecule D2 Chromosome CM060214.1 <> na Primary Assembly 87852349 na Chromosome_D3 assembled-molecule D3 Chromosome CM060215.1 <> na Primary Assembly 94922377 na Chromosome_D4 assembled-molecule D4 Chromosome CM060216.1 <> na Primary Assembly 95092077 na Chromosome_E1 assembled-molecule E1 Chromosome CM060217.1 <> na Primary Assembly 71120613 na Chromosome_E2 assembled-molecule E2 Chromosome CM060218.1 <> na Primary Assembly 61574599 na Chromosome_E3 assembled-molecule E3 Chromosome CM060219.1 <> na Primary Assembly 41958770 na Chromosome_E4 assembled-molecule E4 Chromosome CM060220.1 <> na Primary Assembly 64562599 na Chromosome_F2 assembled-molecule F2 Chromosome CM060221.1 <> na Primary Assembly 82268335 na Chromosome_X assembled-molecule X Chromosome CM060222.1 <> na Primary Assembly 127642474 na Chromosome_Y assembled-molecule Y Chromosome CM060223.1 <> na Primary Assembly 13807772 na unalloc_scaffold_1 unplaced-scaffold na na JAQJVZ020000021.1 <> na Primary Assembly 3573400 na unalloc_scaffold_2 unplaced-scaffold na na JAQJVZ020000022.1 <> na Primary Assembly 2860388 na unalloc_scaffold_3 unplaced-scaffold na na JAQJVZ020000023.1 <> na Primary Assembly 2653822 na unalloc_scaffold_4 unplaced-scaffold na na JAQJVZ020000024.1 <> na Primary Assembly 2023079 na unalloc_scaffold_5 unplaced-scaffold na na JAQJVZ020000025.1 <> na Primary Assembly 1917534 na unalloc_scaffold_6 unplaced-scaffold na na JAQJVZ020000026.1 <> na Primary Assembly 1600184 na unalloc_scaffold_7 unplaced-scaffold na na JAQJVZ020000027.1 <> na Primary Assembly 1147071 na unalloc_scaffold_8 unplaced-scaffold na na JAQJVZ020000028.1 <> na Primary Assembly 970218 na unalloc_scaffold_9 unplaced-scaffold na na JAQJVZ020000029.1 <> na Primary Assembly 918729 na unalloc_scaffold_10 unplaced-scaffold na na JAQJVZ020000030.1 <> na Primary Assembly 897082 na unalloc_scaffold_11 unplaced-scaffold na na JAQJVZ020000031.1 <> na Primary Assembly 852994 na unalloc_scaffold_12 unplaced-scaffold na na JAQJVZ020000032.1 <> na Primary Assembly 849330 na unalloc_scaffold_13 unplaced-scaffold na na JAQJVZ020000033.1 <> na Primary Assembly 760970 na unalloc_scaffold_14 unplaced-scaffold na na JAQJVZ020000034.1 <> na Primary Assembly 748950 na unalloc_scaffold_15 unplaced-scaffold na na JAQJVZ020000035.1 <> na Primary Assembly 725519 na unalloc_scaffold_16 unplaced-scaffold na na JAQJVZ020000036.1 <> na Primary Assembly 669575 na unalloc_scaffold_17 unplaced-scaffold na na JAQJVZ020000037.1 <> na Primary Assembly 661007 na unalloc_scaffold_18 unplaced-scaffold na na JAQJVZ020000038.1 <> na Primary Assembly 635895 na unalloc_scaffold_19 unplaced-scaffold na na JAQJVZ020000039.1 <> na Primary Assembly 611898 na unalloc_scaffold_20 unplaced-scaffold na na JAQJVZ020000040.1 <> na Primary Assembly 587539 na unalloc_scaffold_21 unplaced-scaffold na na JAQJVZ020000041.1 <> na Primary Assembly 580077 na unalloc_scaffold_22 unplaced-scaffold na na JAQJVZ020000042.1 <> na Primary Assembly 568798 na unalloc_scaffold_23 unplaced-scaffold na na JAQJVZ020000043.1 <> na Primary Assembly 545505 na unalloc_scaffold_24 unplaced-scaffold na na JAQJVZ020000044.1 <> na Primary Assembly 477171 na unalloc_scaffold_25 unplaced-scaffold na na JAQJVZ020000045.1 <> na Primary Assembly 467738 na unalloc_scaffold_26 unplaced-scaffold na na JAQJVZ020000046.1 <> na Primary Assembly 462516 na unalloc_scaffold_27 unplaced-scaffold na na JAQJVZ020000047.1 <> na Primary Assembly 420856 na unalloc_scaffold_28 unplaced-scaffold na na JAQJVZ020000048.1 <> na Primary Assembly 415825 na unalloc_scaffold_29 unplaced-scaffold na na JAQJVZ020000049.1 <> na Primary Assembly 413827 na unalloc_scaffold_30 unplaced-scaffold na na JAQJVZ020000050.1 <> na Primary Assembly 390952 na unalloc_scaffold_31 unplaced-scaffold na na JAQJVZ020000051.1 <> na Primary Assembly 380230 na unalloc_scaffold_32 unplaced-scaffold na na JAQJVZ020000052.1 <> na Primary Assembly 371501 na unalloc_scaffold_33 unplaced-scaffold na na JAQJVZ020000053.1 <> na Primary Assembly 369025 na unalloc_scaffold_34 unplaced-scaffold na na JAQJVZ020000054.1 <> na Primary Assembly 351916 na unalloc_scaffold_35 unplaced-scaffold na na JAQJVZ020000055.1 <> na Primary Assembly 348970 na unalloc_scaffold_36 unplaced-scaffold na na JAQJVZ020000056.1 <> na Primary Assembly 344315 na unalloc_scaffold_37 unplaced-scaffold na na JAQJVZ020000057.1 <> na Primary Assembly 334717 na unalloc_scaffold_38 unplaced-scaffold na na JAQJVZ020000058.1 <> na Primary Assembly 333702 na unalloc_scaffold_39 unplaced-scaffold na na JAQJVZ020000059.1 <> na Primary Assembly 329443 na unalloc_scaffold_40 unplaced-scaffold na na JAQJVZ020000060.1 <> na Primary Assembly 324480 na unalloc_scaffold_41 unplaced-scaffold na na JAQJVZ020000061.1 <> na Primary Assembly 324476 na unalloc_scaffold_42 unplaced-scaffold na na JAQJVZ020000062.1 <> na Primary Assembly 319956 na unalloc_scaffold_43 unplaced-scaffold na na JAQJVZ020000063.1 <> na Primary Assembly 312394 na unalloc_scaffold_44 unplaced-scaffold na na JAQJVZ020000064.1 <> na Primary Assembly 309529 na unalloc_scaffold_45 unplaced-scaffold na na JAQJVZ020000065.1 <> na Primary Assembly 309430 na unalloc_scaffold_46 unplaced-scaffold na na JAQJVZ020000066.1 <> na Primary Assembly 305752 na unalloc_scaffold_47 unplaced-scaffold na na JAQJVZ020000067.1 <> na Primary Assembly 301166 na unalloc_scaffold_48 unplaced-scaffold na na JAQJVZ020000068.1 <> na Primary Assembly 293265 na unalloc_scaffold_49 unplaced-scaffold na na JAQJVZ020000069.1 <> na Primary Assembly 287204 na unalloc_scaffold_50 unplaced-scaffold na na JAQJVZ020000070.1 <> na Primary Assembly 286374 na unalloc_scaffold_51 unplaced-scaffold na na JAQJVZ020000071.1 <> na Primary Assembly 284154 na unalloc_scaffold_52 unplaced-scaffold na na JAQJVZ020000072.1 <> na Primary Assembly 277413 na unalloc_scaffold_53 unplaced-scaffold na na JAQJVZ020000073.1 <> na Primary Assembly 276294 na unalloc_scaffold_54 unplaced-scaffold na na JAQJVZ020000074.1 <> na Primary Assembly 263797 na unalloc_scaffold_55 unplaced-scaffold na na JAQJVZ020000075.1 <> na Primary Assembly 249444 na unalloc_scaffold_56 unplaced-scaffold na na JAQJVZ020000076.1 <> na Primary Assembly 248034 na unalloc_scaffold_57 unplaced-scaffold na na JAQJVZ020000077.1 <> na Primary Assembly 238252 na unalloc_scaffold_58 unplaced-scaffold na na JAQJVZ020000078.1 <> na Primary Assembly 232202 na unalloc_scaffold_59 unplaced-scaffold na na JAQJVZ020000079.1 <> na Primary Assembly 231975 na unalloc_scaffold_60 unplaced-scaffold na na JAQJVZ020000080.1 <> na Primary Assembly 230581 na unalloc_scaffold_61 unplaced-scaffold na na JAQJVZ020000081.1 <> na Primary Assembly 225858 na unalloc_scaffold_62 unplaced-scaffold na na JAQJVZ020000082.1 <> na Primary Assembly 224349 na unalloc_scaffold_63 unplaced-scaffold na na JAQJVZ020000083.1 <> na Primary Assembly 218982 na unalloc_scaffold_64 unplaced-scaffold na na JAQJVZ020000084.1 <> na Primary Assembly 217634 na unalloc_scaffold_65 unplaced-scaffold na na JAQJVZ020000085.1 <> na Primary Assembly 213260 na unalloc_scaffold_66 unplaced-scaffold na na JAQJVZ020000086.1 <> na Primary Assembly 204083 na unalloc_scaffold_67 unplaced-scaffold na na JAQJVZ020000087.1 <> na Primary Assembly 202480 na unalloc_scaffold_68 unplaced-scaffold na na JAQJVZ020000088.1 <> na Primary Assembly 201811 na unalloc_scaffold_69 unplaced-scaffold na na JAQJVZ020000089.1 <> na Primary Assembly 199558 na unalloc_scaffold_70 unplaced-scaffold na na JAQJVZ020000090.1 <> na Primary Assembly 199198 na unalloc_scaffold_71 unplaced-scaffold na na JAQJVZ020000091.1 <> na Primary Assembly 194582 na unalloc_scaffold_72 unplaced-scaffold na na JAQJVZ020000092.1 <> na Primary Assembly 192599 na unalloc_scaffold_73 unplaced-scaffold na na JAQJVZ020000093.1 <> na Primary Assembly 185995 na unalloc_scaffold_74 unplaced-scaffold na na JAQJVZ020000094.1 <> na Primary Assembly 177175 na unalloc_scaffold_75 unplaced-scaffold na na JAQJVZ020000095.1 <> na Primary Assembly 170625 na unalloc_scaffold_76 unplaced-scaffold na na JAQJVZ020000096.1 <> na Primary Assembly 159411 na unalloc_scaffold_77 unplaced-scaffold na na JAQJVZ020000097.1 <> na Primary Assembly 158944 na unalloc_scaffold_78 unplaced-scaffold na na JAQJVZ020000098.1 <> na Primary Assembly 158104 na unalloc_scaffold_79 unplaced-scaffold na na JAQJVZ020000099.1 <> na Primary Assembly 153661 na unalloc_scaffold_80 unplaced-scaffold na na JAQJVZ020000100.1 <> na Primary Assembly 151776 na unalloc_scaffold_81 unplaced-scaffold na na JAQJVZ020000101.1 <> na Primary Assembly 149464 na unalloc_scaffold_82 unplaced-scaffold na na JAQJVZ020000102.1 <> na Primary Assembly 149232 na unalloc_scaffold_83 unplaced-scaffold na na JAQJVZ020000103.1 <> na Primary Assembly 143565 na unalloc_scaffold_84 unplaced-scaffold na na JAQJVZ020000104.1 <> na Primary Assembly 142316 na unalloc_scaffold_85 unplaced-scaffold na na JAQJVZ020000105.1 <> na Primary Assembly 141075 na unalloc_scaffold_86 unplaced-scaffold na na JAQJVZ020000106.1 <> na Primary Assembly 139784 na unalloc_scaffold_87 unplaced-scaffold na na JAQJVZ020000107.1 <> na Primary Assembly 138137 na unalloc_scaffold_88 unplaced-scaffold na na JAQJVZ020000108.1 <> na Primary Assembly 138008 na unalloc_scaffold_89 unplaced-scaffold na na JAQJVZ020000109.1 <> na Primary Assembly 135935 na unalloc_scaffold_90 unplaced-scaffold na na JAQJVZ020000110.1 <> na Primary Assembly 134718 na unalloc_scaffold_91 unplaced-scaffold na na JAQJVZ020000111.1 <> na Primary Assembly 132463 na unalloc_scaffold_92 unplaced-scaffold na na JAQJVZ020000112.1 <> na Primary Assembly 131161 na unalloc_scaffold_93 unplaced-scaffold na na JAQJVZ020000113.1 <> na Primary Assembly 130471 na unalloc_scaffold_94 unplaced-scaffold na na JAQJVZ020000114.1 <> na Primary Assembly 127593 na unalloc_scaffold_95 unplaced-scaffold na na JAQJVZ020000115.1 <> na Primary Assembly 126826 na unalloc_scaffold_96 unplaced-scaffold na na JAQJVZ020000116.1 <> na Primary Assembly 125468 na unalloc_scaffold_97 unplaced-scaffold na na JAQJVZ020000117.1 <> na Primary Assembly 125172 na unalloc_scaffold_98 unplaced-scaffold na na JAQJVZ020000118.1 <> na Primary Assembly 124400 na unalloc_scaffold_99 unplaced-scaffold na na JAQJVZ020000119.1 <> na Primary Assembly 123786 na unalloc_scaffold_100 unplaced-scaffold na na JAQJVZ020000120.1 <> na Primary Assembly 122964 na unalloc_scaffold_101 unplaced-scaffold na na JAQJVZ020000121.1 <> na Primary Assembly 122716 na unalloc_scaffold_102 unplaced-scaffold na na JAQJVZ020000122.1 <> na Primary Assembly 122482 na unalloc_scaffold_103 unplaced-scaffold na na JAQJVZ020000123.1 <> na Primary Assembly 121979 na unalloc_scaffold_104 unplaced-scaffold na na JAQJVZ020000124.1 <> na Primary Assembly 121816 na unalloc_scaffold_105 unplaced-scaffold na na JAQJVZ020000125.1 <> na Primary Assembly 121041 na unalloc_scaffold_106 unplaced-scaffold na na JAQJVZ020000126.1 <> na Primary Assembly 117528 na unalloc_scaffold_107 unplaced-scaffold na na JAQJVZ020000127.1 <> na Primary Assembly 114191 na unalloc_scaffold_108 unplaced-scaffold na na JAQJVZ020000128.1 <> na Primary Assembly 113546 na unalloc_scaffold_109 unplaced-scaffold na na JAQJVZ020000129.1 <> na Primary Assembly 113237 na unalloc_scaffold_110 unplaced-scaffold na na JAQJVZ020000130.1 <> na Primary Assembly 112895 na unalloc_scaffold_111 unplaced-scaffold na na JAQJVZ020000131.1 <> na Primary Assembly 108907 na unalloc_scaffold_112 unplaced-scaffold na na JAQJVZ020000132.1 <> na Primary Assembly 106564 na unalloc_scaffold_113 unplaced-scaffold na na JAQJVZ020000133.1 <> na Primary Assembly 105788 na unalloc_scaffold_114 unplaced-scaffold na na JAQJVZ020000134.1 <> na Primary Assembly 104371 na unalloc_scaffold_115 unplaced-scaffold na na JAQJVZ020000135.1 <> na Primary Assembly 104134 na unalloc_scaffold_116 unplaced-scaffold na na JAQJVZ020000136.1 <> na Primary Assembly 103389 na unalloc_scaffold_117 unplaced-scaffold na na JAQJVZ020000137.1 <> na Primary Assembly 103299 na unalloc_scaffold_118 unplaced-scaffold na na JAQJVZ020000138.1 <> na Primary Assembly 101227 na unalloc_scaffold_119 unplaced-scaffold na na JAQJVZ020000139.1 <> na Primary Assembly 101013 na unalloc_scaffold_120 unplaced-scaffold na na JAQJVZ020000140.1 <> na Primary Assembly 99232 na unalloc_scaffold_121 unplaced-scaffold na na JAQJVZ020000141.1 <> na Primary Assembly 96251 na unalloc_scaffold_122 unplaced-scaffold na na JAQJVZ020000142.1 <> na Primary Assembly 96168 na unalloc_scaffold_123 unplaced-scaffold na na JAQJVZ020000143.1 <> na Primary Assembly 90684 na unalloc_scaffold_124 unplaced-scaffold na na JAQJVZ020000144.1 <> na Primary Assembly 88239 na unalloc_scaffold_125 unplaced-scaffold na na JAQJVZ020000145.1 <> na Primary Assembly 87744 na unalloc_scaffold_126 unplaced-scaffold na na JAQJVZ020000146.1 <> na Primary Assembly 85955 na unalloc_scaffold_127 unplaced-scaffold na na JAQJVZ020000147.1 <> na Primary Assembly 84378 na unalloc_scaffold_128 unplaced-scaffold na na JAQJVZ020000148.1 <> na Primary Assembly 77536 na unalloc_scaffold_129 unplaced-scaffold na na JAQJVZ020000149.1 <> na Primary Assembly 75378 na unalloc_scaffold_130 unplaced-scaffold na na JAQJVZ020000150.1 <> na Primary Assembly 75006 na unalloc_scaffold_131 unplaced-scaffold na na JAQJVZ020000151.1 <> na Primary Assembly 74789 na unalloc_scaffold_132 unplaced-scaffold na na JAQJVZ020000152.1 <> na Primary Assembly 74626 na unalloc_scaffold_133 unplaced-scaffold na na JAQJVZ020000153.1 <> na Primary Assembly 73637 na unalloc_scaffold_134 unplaced-scaffold na na JAQJVZ020000154.1 <> na Primary Assembly 72008 na unalloc_scaffold_135 unplaced-scaffold na na JAQJVZ020000155.1 <> na Primary Assembly 71093 na unalloc_scaffold_136 unplaced-scaffold na na JAQJVZ020000156.1 <> na Primary Assembly 71033 na unalloc_scaffold_137 unplaced-scaffold na na JAQJVZ020000157.1 <> na Primary Assembly 70154 na unalloc_scaffold_138 unplaced-scaffold na na JAQJVZ020000158.1 <> na Primary Assembly 69981 na unalloc_scaffold_139 unplaced-scaffold na na JAQJVZ020000159.1 <> na Primary Assembly 69873 na unalloc_scaffold_140 unplaced-scaffold na na JAQJVZ020000160.1 <> na Primary Assembly 66445 na unalloc_scaffold_141 unplaced-scaffold na na JAQJVZ020000161.1 <> na Primary Assembly 65852 na unalloc_scaffold_142 unplaced-scaffold na na JAQJVZ020000162.1 <> na Primary Assembly 62271 na unalloc_scaffold_143 unplaced-scaffold na na JAQJVZ020000163.1 <> na Primary Assembly 62248 na unalloc_scaffold_144 unplaced-scaffold na na JAQJVZ020000164.1 <> na Primary Assembly 61536 na unalloc_scaffold_145 unplaced-scaffold na na JAQJVZ020000165.1 <> na Primary Assembly 60832 na unalloc_scaffold_146 unplaced-scaffold na na JAQJVZ020000166.1 <> na Primary Assembly 60735 na unalloc_scaffold_147 unplaced-scaffold na na JAQJVZ020000167.1 <> na Primary Assembly 60188 na unalloc_scaffold_148 unplaced-scaffold na na JAQJVZ020000168.1 <> na Primary Assembly 58762 na unalloc_scaffold_149 unplaced-scaffold na na JAQJVZ020000169.1 <> na Primary Assembly 57563 na unalloc_scaffold_150 unplaced-scaffold na na JAQJVZ020000170.1 <> na Primary Assembly 57330 na unalloc_scaffold_151 unplaced-scaffold na na JAQJVZ020000171.1 <> na Primary Assembly 55846 na unalloc_scaffold_152 unplaced-scaffold na na JAQJVZ020000172.1 <> na Primary Assembly 54339 na unalloc_scaffold_153 unplaced-scaffold na na JAQJVZ020000173.1 <> na Primary Assembly 54177 na unalloc_scaffold_154 unplaced-scaffold na na JAQJVZ020000174.1 <> na Primary Assembly 53556 na unalloc_scaffold_155 unplaced-scaffold na na JAQJVZ020000175.1 <> na Primary Assembly 52766 na unalloc_scaffold_156 unplaced-scaffold na na JAQJVZ020000176.1 <> na Primary Assembly 51737 na unalloc_scaffold_157 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Primary Assembly 40980 na unalloc_scaffold_168 unplaced-scaffold na na JAQJVZ020000188.1 <> na Primary Assembly 40934 na unalloc_scaffold_169 unplaced-scaffold na na JAQJVZ020000189.1 <> na Primary Assembly 40919 na unalloc_scaffold_170 unplaced-scaffold na na JAQJVZ020000190.1 <> na Primary Assembly 40879 na unalloc_scaffold_171 unplaced-scaffold na na JAQJVZ020000191.1 <> na Primary Assembly 39901 na unalloc_scaffold_172 unplaced-scaffold na na JAQJVZ020000192.1 <> na Primary Assembly 39670 na unalloc_scaffold_173 unplaced-scaffold na na JAQJVZ020000193.1 <> na Primary Assembly 39215 na unalloc_scaffold_174 unplaced-scaffold na na JAQJVZ020000194.1 <> na Primary Assembly 39106 na unalloc_scaffold_175 unplaced-scaffold na na JAQJVZ020000195.1 <> na Primary Assembly 38067 na unalloc_scaffold_176 unplaced-scaffold na na JAQJVZ020000196.1 <> na Primary Assembly 37667 na unalloc_scaffold_177 unplaced-scaffold na na JAQJVZ020000197.1 <> na Primary Assembly 35345 na unalloc_scaffold_178 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