track assembly
longLabel Assembly
shortLabel Assembly
visibility pack
colorByStrand 150,100,30 230,170,40
color 150,100,30
altColor 230,170,40
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.assembly.bb
type bigBed 6
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.assembly
searchIndex name
searchTrix ixIxx/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.assembly.ix
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
group map

track cytoBandIdeo
shortLabel Chromosome Band (Ideogram)
longLabel Ideogram for Orientation
group map
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.cytoBand.bb

track gc5Base
shortLabel GC Percent
longLabel GC Percent in 5-Base Windows
group map
visibility full
autoScale Off
maxHeightPixels 128:36:16
graphTypeDefault Bar
gridDefault OFF
windowingFunction Mean
color 0,0,0
altColor 128,128,128
viewLimits 30:70
type bigWig 0 100
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.gc5Base.bw
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.gc5Base

track tanDups
shortLabel Tandem Dups
longLabel Paired identical sequences
compositeTrack on
visibility hide
type bigBed 12
group map
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.tanDups

    track tandemDups
    parent tanDups on
    shortLabel Tandem Dups
    longLabel Paired exactly identical sequence survey over entire genome assembly
    bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.tandemDups.bb
    type bigBed 12

track repeatMasker
shortLabel RepeatMasker
longLabel RepeatMasker Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.rmsk.bb
xrefDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.rmsk.align.bb
maxWindowToDraw 5000000
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.repeatMasker

track repeatModeler
shortLabel RepeatModeler
longLabel RepeatModeler Repetitive Elements
type bigRmsk 9 +
visibility pack
group varRep
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.rModel.bb
xrefDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.rModel.align.bb
maxWindowToDraw 5000000
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.repeatModeler

track simpleRepeat
shortLabel Simple Repeats
longLabel Simple Tandem Repeats by TRF
group varRep
visibility dense
type bigBed 4 +
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.simpleRepeat.bb
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.simpleRepeat

track cpgIslands
compositeTrack on
shortLabel CpG Islands
longLabel CpG Islands (Islands < 300 Bases are Light Green)
group regulation
visibility pack
type bigBed 4 +
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.cpgIslands

    track cpgIslandExt
    parent cpgIslands off
    shortLabel CpG Islands
    longLabel CpG Islands (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 1
    bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.cpgIslandExt.bb

    track cpgIslandExtUnmasked
    parent cpgIslands on
    shortLabel Unmasked CpG
    longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green)
    type bigBed 4 +
    priority 2
    bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.cpgIslandExtUnmasked.bb

track windowMasker
shortLabel WM + SDust
longLabel Genomic Intervals Masked by WindowMasker + SDust
group varRep
visibility dense
type bigBed 3
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.windowMasker.bb
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.windowMasker

track allGaps
shortLabel All Gaps
longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps
group map
visibility dense
type bigBed 3
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.allGaps.bb
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.allGaps

track augustus
shortLabel Augustus
longLabel Augustus Gene Predictions
group genes
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.augustus.bb
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.augustus

track xenoRefGene
shortLabel RefSeq mRNAs
longLabel RefSeq mRNAs mapped to this assembly
group rna
visibility pack
color 180,0,0
type bigGenePred
bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.xenoRefGene.bb
url https://www.ncbi.nlm.nih.gov/nuccore/$$
urlLabel NCBI Nucleotide database:
labelFields name,geneName,geneName2
defaultLabelFields geneName
searchIndex name
searchTrix ixIxx/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.xenoRefGene.ix
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.xenoRefGene

track GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
compositeTrack on
shortLabel Chain/Net
longLabel Chain alignments to target sequence: GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri
subGroup1 view Views chain=Chains synten=Syntenic rbest=Reciprocal_best liftover=Lift_over align=Alignment
subGroup2 species Assembly s000=hg38 s001=hs1 s002=GCA_028885655.2 s003=GCA_028885625.2 s004=GCA_028878055.2 s005=GCF_011100555.1 s006=GCF_020740605.2 s007=GCF_027406575.1
subGroup3 chainType chain_type c00=chain c01=syntenic c02=reciprocal_best c03=lift_over c04=chain_align c05=syntenic_align c06=reciprocal_align c07=lift_over_align
dragAndDrop subTracks
visibility hide
group compGeno
color 0,0,0
altColor 255,255,0
type bed 3
chainLinearGap loose
chainMinScore 5000
dimensions dimensionX=chainType dimensionY=species
sortOrder species=+ view=+ chainType=+
configurable on
html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet

    track GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain
    shortLabel Chains
    view chain
    visibility pack
    subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

    track GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen
    shortLabel Syntenic
    view synten
    visibility pack
    subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

    track GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest
    shortLabel Reciprocal best
    view rbest
    visibility pack
    subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

    track GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver
    shortLabel Lift over
    view liftover
    visibility pack
    subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet
    spectrum on

        track chainHg38
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain off
        subGroups view=chain species=s000 chainType=c00
        shortLabel Human/hg38 Chain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainHg38.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainHg38Link.bb
        otherDb hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainSynHg38
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s000 chainType=c01
        shortLabel Human/hg38 synChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynHg38.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynHg38Link.bb
        otherDb hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainRBestHg38
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s000 chainType=c02
        shortLabel Human/hg38 rbChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestHg38.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestHg38Link.bb
        otherDb hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainLiftOverHg38
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s000 chainType=c03
        shortLabel Human/hg38 loChain
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigChain hg38
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverHg38.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverHg38Link.bb
        otherDb hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track chainHs1
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain off
        subGroups view=chain species=s001 chainType=c00
        shortLabel Human/hs1 Chain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainHs1.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainHs1Link.bb
        otherDb hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track chainSynHs1
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s001 chainType=c01
        shortLabel Human/hs1 synChain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynHs1.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynHs1Link.bb
        otherDb hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track chainRBestHs1
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s001 chainType=c02
        shortLabel Human/hs1 rbChain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestHs1.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestHs1Link.bb
        otherDb hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track chainLiftOverHs1
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s001 chainType=c03
        shortLabel Human/hs1 loChain
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigChain hs1
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverHs1.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverHs1Link.bb
        otherDb hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track chainGCA_028885655.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain off
        subGroups view=chain species=s002 chainType=c00
        shortLabel Sumatran orangutan Chain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCA_028885655.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track chainSynGCA_028885655.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s002 chainType=c01
        shortLabel Sumatran orangutan synChain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCA_028885655.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track chainRBestGCA_028885655.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s002 chainType=c02
        shortLabel Sumatran orangutan rbChain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCA_028885655.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track chainLiftOverGCA_028885655.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s002 chainType=c03
        shortLabel Sumatran orangutan loChain
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028885655.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCA_028885655.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCA_028885655.2Link.bb
        otherDb GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track chainGCA_028885625.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain off
        subGroups view=chain species=s003 chainType=c00
        shortLabel Bornean orangutan Chain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCA_028885625.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track chainSynGCA_028885625.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s003 chainType=c01
        shortLabel Bornean orangutan synChain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCA_028885625.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track chainRBestGCA_028885625.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s003 chainType=c02
        shortLabel Bornean orangutan rbChain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCA_028885625.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track chainLiftOverGCA_028885625.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s003 chainType=c03
        shortLabel Bornean orangutan loChain
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigChain GCA_028885625.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCA_028885625.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCA_028885625.2Link.bb
        otherDb GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track chainGCA_028878055.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewchain off
        subGroups view=chain species=s004 chainType=c00
        shortLabel siamang Chain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCA_028878055.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 16.571

        track chainSynGCA_028878055.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
        subGroups view=synten species=s004 chainType=c01
        shortLabel siamang synChain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCA_028878055.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 16.571

        track chainRBestGCA_028878055.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s004 chainType=c02
        shortLabel siamang rbChain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCA_028878055.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCA_028878055.2Link.bb
        otherDb GCA_028878055.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 16.571

        track chainLiftOverGCA_028878055.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
        subGroups view=liftover species=s004 chainType=c03
        shortLabel siamang loChain
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigChain GCA_028878055.2
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCA_028878055.2.bb
        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCA_028878055.2Link.bb
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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCF_011100555.1Link.bb
        otherDb GCF_011100555.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 33.730

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        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCF_020740605.2Link.bb
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        priority 68.557

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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCF_020740605.2Link.bb
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        priority 68.557

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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCF_020740605.2Link.bb
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        priority 68.557

        track chainLiftOverGCF_020740605.2
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCF_020740605.2Link.bb
        otherDb GCF_020740605.2
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        priority 68.557

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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213

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        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewSynTen off
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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainSynGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213

        track chainRBestGCF_027406575.1
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewRBest off
        subGroups view=rbest species=s007 chainType=c02
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        type bigChain GCF_027406575.1
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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainRBestGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213

        track chainLiftOverGCF_027406575.1
        subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNetViewLiftOver off
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        type bigChain GCF_027406575.1
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        linkDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainLiftOverGCF_027406575.1Link.bb
        otherDb GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213

    track GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
    shortLabel Nets
    view align
    visibility dense
    subTrack GCA_028858775.2_NHGRI_mPanTro3-v2.0_priChainNet

        track netHg38
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s000 chainType=c04
        shortLabel Human/hg38 mafNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
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        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.net.summary.bb
        speciesOrder hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track synNetHg38
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s000 chainType=c05
        shortLabel Human/hg38 synNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.synNet.summary.bb
        speciesOrder hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track rbestNetHg38
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s000 chainType=c06
        shortLabel Human/hg38 rbestNet
        longLabel Human/hg38/hg38 (Dec. 2013) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hg38.rbestNet.summary.bb
        speciesOrder hg38
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 9.893

        track netHs1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s001 chainType=c04
        shortLabel Human/hs1 mafNet
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hs1.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hs1.net.summary.bb
        speciesOrder hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track synNetHs1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s001 chainType=c05
        shortLabel Human/hs1 synNet
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hs1.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hs1.synNet.summary.bb
        speciesOrder hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track rbestNetHs1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s001 chainType=c06
        shortLabel Human/hs1 rbestNet
        longLabel Human/hs1/hs1 (Jan. 2022) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hs1.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.hs1.rbestNet.summary.bb
        speciesOrder hs1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 10.090

        track netGCA_028885655.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s002 chainType=c04
        shortLabel Sumatran orangutan mafNet
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885655.2.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885655.2.net.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track synNetGCA_028885655.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s002 chainType=c05
        shortLabel Sumatran orangutan synNet
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885655.2.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885655.2.synNet.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track rbestNetGCA_028885655.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s002 chainType=c06
        shortLabel Sumatran orangutan rbestNet
        longLabel Sumatran orangutan/GCA_028885655.2_NHGRI_mPonAbe1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885655.2.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885655.2.rbestNet.summary.bb
        speciesOrder GCA_028885655.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.536

        track netGCA_028885625.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s003 chainType=c04
        shortLabel Bornean orangutan mafNet
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885625.2.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885625.2.net.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track synNetGCA_028885625.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s003 chainType=c05
        shortLabel Bornean orangutan synNet
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885625.2.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885625.2.synNet.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track rbestNetGCA_028885625.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s003 chainType=c06
        shortLabel Bornean orangutan rbestNet
        longLabel Bornean orangutan/GCA_028885625.2_NHGRI_mPonPyg2-v2.0_pri (2024-01-08) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885625.2.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028885625.2.rbestNet.summary.bb
        speciesOrder GCA_028885625.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 12.558

        track netGCA_028878055.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s004 chainType=c04
        shortLabel siamang mafNet
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028878055.2.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028878055.2.net.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 16.571

        track synNetGCA_028878055.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s004 chainType=c05
        shortLabel siamang synNet
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028878055.2.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028878055.2.synNet.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 16.571

        track rbestNetGCA_028878055.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s004 chainType=c06
        shortLabel siamang rbestNet
        longLabel siamang/GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri (2024-01-05) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028878055.2.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCA_028878055.2.rbestNet.summary.bb
        speciesOrder GCA_028878055.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 16.571

        track netGCF_011100555.1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s005 chainType=c04
        shortLabel white-tufted-ear marmoset mafNet
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_011100555.1.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_011100555.1.net.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 33.730

        track synNetGCF_011100555.1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s005 chainType=c05
        shortLabel white-tufted-ear marmoset synNet
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_011100555.1.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_011100555.1.synNet.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 33.730

        track rbestNetGCF_011100555.1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s005 chainType=c06
        shortLabel white-tufted-ear marmoset rbestNet
        longLabel white-tufted-ear marmoset/GCF_011100555.1_mCalJa1.2.pat.X (2021-04-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_011100555.1.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_011100555.1.rbestNet.summary.bb
        speciesOrder GCF_011100555.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 33.730

        track netGCF_020740605.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s006 chainType=c04
        shortLabel ring-tailed lemur mafNet
        longLabel ring-tailed lemur/GCF_020740605.2_mLemCat1.pri (2021-11-04) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_020740605.2.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_020740605.2.net.summary.bb
        speciesOrder GCF_020740605.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 68.557

        track synNetGCF_020740605.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s006 chainType=c05
        shortLabel ring-tailed lemur synNet
        longLabel ring-tailed lemur/GCF_020740605.2_mLemCat1.pri (2021-11-04) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_020740605.2.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_020740605.2.synNet.summary.bb
        speciesOrder GCF_020740605.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 68.557

        track rbestNetGCF_020740605.2
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s006 chainType=c06
        shortLabel ring-tailed lemur rbestNet
        longLabel ring-tailed lemur/GCF_020740605.2_mLemCat1.pri (2021-11-04) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_020740605.2.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_020740605.2.rbestNet.summary.bb
        speciesOrder GCF_020740605.2
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 68.557

        track netGCF_027406575.1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s007 chainType=c04
        shortLabel slow loris mafNet
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_027406575.1.net.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_027406575.1.net.summary.bb
        speciesOrder GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213

        track synNetGCF_027406575.1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s007 chainType=c05
        shortLabel slow loris synNet
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_027406575.1.synNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_027406575.1.synNet.summary.bb
        speciesOrder GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213

        track rbestNetGCF_027406575.1
        parent GCA_028858775.2_NHGRI_mPanTro3-v2.0_priMafNetViewnet
        subGroups view=align species=s007 chainType=c06
        shortLabel slow loris rbestNet
        longLabel slow loris/GCF_027406575.1_mNycCou1.pri (2022-12-28) Chained Alignments
        type bigMaf
        bigDataUrl bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_027406575.1.rbestNet.bb
        summary bbi/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.GCF_027406575.1.rbestNet.summary.bb
        speciesOrder GCF_027406575.1
        html html/GCA_028858775.2_NHGRI_mPanTro3-v2.0_pri.chainNet
        priority 85.213