hub GCA_028885495.2 genome assembly shortLabel western lowland gorilla (maternal KB3781 2024) longLabel western lowland gorilla (maternal KB3781 2024)/Gorilla gorilla gorilla/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat genome assembly useOneFile on email hclawson@ucsc.edu descriptionUrl html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.description.html genome GCA_028885495.2 taxId 9595 groups groups.txt description western lowland gorilla (maternal KB3781 2024) twoBitPath GCA_028885495.2.2bit twoBitBptUrl GCA_028885495.2.2bit.bpt chromSizes GCA_028885495.2.chrom.sizes.txt chromAliasBb GCA_028885495.2.chromAlias.bb chromAuthority ucsc organism NHGRI_mGorGor1-v2.0_mat Jan. 2024 defaultPos CM054582.2:83198314-83208314 scientificName Gorilla gorilla gorilla htmlPath html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.description.html blat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/028/885/495/GCA_028885495.2 transBlat dynablat-01.soe.ucsc.edu 4040 dynamic GCA/028/885/495/GCA_028885495.2 isPcr dynablat-01.soe.ucsc.edu 4040 dynamic GCA/028/885/495/GCA_028885495.2 track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.assembly.bb type bigBed 6 html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.assembly searchIndex name searchTrix ixIxx/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.gc5Base.bw html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.gc5Base track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.rmsk.bb xrefDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.rmsk.align.bb maxWindowToDraw 5000000 html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.repeatMasker track repeatModeler shortLabel RepeatModeler longLabel RepeatModeler Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.rModel.bb xrefDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.rModel.align.bb maxWindowToDraw 5000000 html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.repeatModeler track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.simpleRepeat.bb html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.windowMasker.bb html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.allGaps.bb html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.augustus.bb html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.xenoRefGene.ix html html/GCA_028885495.2_NHGRI_mGorGor1-v2.0_mat.xenoRefGene