The repeat files provided for this assembly were generated using RepeatMasker. Smit, AFA, Hubley, R & Green, P., RepeatMasker version 4.1.4 1996-2010 . VERSION: RepeatMasker version 4.1.4 Search Engine: NCBI/RMBLAST [ 2.13.0+ ] ##################################### # LIBPATH: # /hive/data/staging/data/RepeatMasker221107/Libraries # /cluster/home/hiram/.RepeatMaskerCache # /hive/data/genomes/asmHubs/genbankBuild/GCA/029/215/705/GCA_029215705.1_aSpeHam1.0.hap1/trackData/repeatMasker/run.cluster/RM_286401.MonApr100805212023 ##################################### Using Master RepeatMasker Database: /hive/data/staging/data/RepeatMasker221107/Libraries/RepeatMaskerLib.h5 Title : Dfam Version : 3.6 Date : 2022-04-12 Families : 733,031 Species/Taxa Search: Spea hammondii [NCBI Taxonomy ID: 228670] Lineage: root;cellular organisms;Eukaryota;Opisthokonta;Metazoa; Eumetazoa;Bilateria;Deuterostomia;Chordata; Craniata ;Vertebrata ; Gnathostomata ;Teleostomi;Euteleostomi; Sarcopterygii;Dipnotetrapodomorpha;Tetrapoda;Amphibia 113 families in ancestor taxa; 0 lineage-specific families It appears that RepeatMasker attempted to generate a cached library for this species before but didn't complete it. Attempting to remove and reubild this cache: /hive/data/staging/data/RepeatMasker221107/Libraries/CONS-Dfam_3.6/Spea_hammondii.working Building species libraries in: /hive/data/staging/data/RepeatMasker221107/Libraries/CONS-Dfam_3.6/Spea_hammondii RepeatMasker version 4.1.4 # RMRBMeta.embl library version: CC RELEASE 20181026; * # RepeatMasker engine: -engine rmblast -pa 1 # RepeatMasker library options: -species 'Spea hammondii' PARAMETERS: /hive/data/staging/data/RepeatMasker221107/RepeatMasker -engine rmblast -pa 1 -align -species 'Spea hammondii'