# Assembly name:  Cryege1_pri_2025
# Organism name:  Cryptoblepharus egeriae (lizards & snakes)
# Isolate:  BTS541
# Sex:  male
# Taxid:          2509230
# BioSample:      SAMN32772511
# BioProject:     PRJNA924831
# Submitter:      Threatened Species Initiative
# Date:           2025-08-12
# Assembly type:  haploid
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JAREYC02
# Assembly method: hifiasm v. 0.16.1
# Expected final version: yes
# Genome coverage: 40.0x
# Sequencing technology: PacBio
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_030015325.2
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_030015335.2		Primary Assembly
## GCA_030015345.2		non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
chr1	assembled-molecule	1	Chromosome	CM123734.1	<>	na	Primary Assembly	269273026	na
chr2	assembled-molecule	2	Chromosome	CM123735.1	<>	na	Primary Assembly	233045284	na
chr3	assembled-molecule	3	Chromosome	CM123736.1	<>	na	Primary Assembly	201503410	na
chr4	assembled-molecule	4	Chromosome	CM123737.1	<>	na	Primary Assembly	190333800	na
chr5	assembled-molecule	5	Chromosome	CM123738.1	<>	na	Primary Assembly	109182572	na
chr6	assembled-molecule	6	Chromosome	CM123739.1	<>	na	Primary Assembly	76900254	na
chr7	assembled-molecule	7	Chromosome	CM123740.1	<>	na	Primary Assembly	71111990	na
chr8	assembled-molecule	8	Chromosome	CM123741.1	<>	na	Primary Assembly	57402750	na
chr9	assembled-molecule	9	Chromosome	CM123742.1	<>	na	Primary Assembly	43659756	na
chr10	assembled-molecule	10	Chromosome	CM123743.1	<>	na	Primary Assembly	32008434	na
chr11	assembled-molecule	11	Chromosome	CM123744.1	<>	na	Primary Assembly	31263638	na
chr12	assembled-molecule	12	Chromosome	CM123745.1	<>	na	Primary Assembly	28659383	na
chr13	assembled-molecule	13	Chromosome	CM123746.1	<>	na	Primary Assembly	23193444	na
chr14	assembled-molecule	14	Chromosome	CM123747.1	<>	na	Primary Assembly	17640705	na
chr15	assembled-molecule	15	Chromosome	CM123748.1	<>	na	Primary Assembly	12289446	na
chrY	assembled-molecule	Y	Chromosome	CM123749.1	<>	na	Primary Assembly	65046251	na
unscaff_ctg_016	unplaced-scaffold	na	na	JAREYC020000017.1	<>	na	Primary Assembly	98610	na
unscaff_ctg_017	unplaced-scaffold	na	na	JAREYC020000018.1	<>	na	Primary Assembly	78140	na
unscaff_ctg_018	unplaced-scaffold	na	na	JAREYC020000019.1	<>	na	Primary Assembly	64507	na
unscaff_ctg_019	unplaced-scaffold	na	na	JAREYC020000020.1	<>	na	Primary Assembly	41381	na
unscaff_ctg_020	unplaced-scaffold	na	na	JAREYC020000021.1	<>	na	Primary Assembly	39155	na
unscaff_ctg_021	unplaced-scaffold	na	na	JAREYC020000022.1	<>	na	Primary Assembly	38406	na
unscaff_ctg_022	unplaced-scaffold	na	na	JAREYC020000023.1	<>	na	Primary Assembly	33629	na
unscaff_ctg_023	unplaced-scaffold	na	na	JAREYC020000024.1	<>	na	Primary Assembly	32594	na
unscaff_ctg_024	unplaced-scaffold	na	na	JAREYC020000025.1	<>	na	Primary Assembly	30234	na
unscaff_ctg_025	unplaced-scaffold	na	na	JAREYC020000026.1	<>	na	Primary Assembly	28279	na
unscaff_ctg_026	unplaced-scaffold	na	na	JAREYC020000027.1	<>	na	Primary Assembly	27197	na
unscaff_ctg_027	unplaced-scaffold	na	na	JAREYC020000028.1	<>	na	Primary Assembly	26388	na
unscaff_ctg_028	unplaced-scaffold	na	na	JAREYC020000029.1	<>	na	Primary Assembly	24863	na
unscaff_ctg_029	unplaced-scaffold	na	na	JAREYC020000030.1	<>	na	Primary Assembly	24273	na
unscaff_ctg_030	unplaced-scaffold	na	na	JAREYC020000031.1	<>	na	Primary Assembly	21681	na
unscaff_ctg_031	unplaced-scaffold	na	na	JAREYC020000032.1	<>	na	Primary Assembly	20527	na
unscaff_ctg_032	unplaced-scaffold	na	na	JAREYC020000033.1	<>	na	Primary Assembly	20197	na
unscaff_ctg_033	unplaced-scaffold	na	na	JAREYC020000034.1	<>	na	Primary Assembly	18994	na
unscaff_ctg_034	unplaced-scaffold	na	na	JAREYC020000036.1	<>	na	Primary Assembly	13466	na
unscaff_ctg_035	unplaced-scaffold	na	na	JAREYC020000037.1	<>	na	Primary Assembly	9433	na
mito	assembled-molecule	MT	Mitochondrion	CM057396.1	<>	na	non-nuclear	17216	na