# Assembly name: OD_1.0 # Organism name: Canis lupus familiaris (dog) # Infraspecific name: breed=Bernese Mountain Dog # Isolate: OD # Sex: male # Taxid: 9615 # BioSample: SAMN31138972 # BioProject: PRJNA886700 # Submitter: University of Michigan # Date: 2023-08-31 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JARDRE01 # Assembly method: Flye v. 2.3 # Expected final version: yes # Reference guided assembly: GCF_011100685.1 # Genome coverage: 8x # Sequencing technology: Illumina HiSeq; Oxford Nanopore PromethION # GenBank assembly accession: GCA_031010635.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_031010905.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM061922.1 <> na Primary Assembly 123289065 na chr2 assembled-molecule 2 Chromosome CM061923.1 <> na Primary Assembly 84459669 na chr3 assembled-molecule 3 Chromosome CM061924.1 <> na Primary Assembly 92234687 na chr4 assembled-molecule 4 Chromosome CM061925.1 <> na Primary Assembly 88913721 na chr5 assembled-molecule 5 Chromosome CM061926.1 <> na Primary Assembly 89439665 na chr6 assembled-molecule 6 Chromosome CM061927.1 <> na Primary Assembly 77951450 na chr7 assembled-molecule 7 Chromosome CM061928.1 <> na Primary Assembly 81170297 na chr8 assembled-molecule 8 Chromosome CM061929.1 <> na Primary Assembly 75427450 na chr9 assembled-molecule 9 Chromosome CM061930.1 <> na Primary Assembly 61595923 na chr10 assembled-molecule 10 Chromosome CM061931.1 <> na Primary Assembly 70658234 na chr11 assembled-molecule 11 Chromosome CM061932.1 <> na Primary Assembly 74165820 na chr12 assembled-molecule 12 Chromosome CM061933.1 <> na Primary Assembly 72712039 na chr13 assembled-molecule 13 Chromosome CM061934.1 <> na Primary Assembly 63971843 na chr14 assembled-molecule 14 Chromosome CM061935.1 <> na Primary Assembly 60790073 na chr15 assembled-molecule 15 Chromosome CM061936.1 <> na Primary Assembly 64457828 na chr16 assembled-molecule 16 Chromosome CM061937.1 <> na Primary Assembly 59394168 na chr17 assembled-molecule 17 Chromosome CM061938.1 <> na Primary Assembly 64500395 na chr18 assembled-molecule 18 Chromosome CM061939.1 <> na Primary Assembly 56354618 na chr19 assembled-molecule 19 Chromosome CM061940.1 <> na Primary Assembly 54681429 na chr20 assembled-molecule 20 Chromosome CM061941.1 <> na Primary Assembly 58631615 na chr21 assembled-molecule 21 Chromosome CM061942.1 <> na Primary Assembly 51010396 na chr22 assembled-molecule 22 Chromosome CM061943.1 <> na Primary Assembly 61519771 na chr23 assembled-molecule 23 Chromosome CM061944.1 <> na Primary Assembly 52953417 na chr24 assembled-molecule 24 Chromosome CM061945.1 <> na Primary Assembly 48282019 na chr25 assembled-molecule 25 Chromosome CM061946.1 <> na Primary Assembly 51779742 na chr26 assembled-molecule 26 Chromosome CM061947.1 <> na Primary Assembly 38438683 na chr27 assembled-molecule 27 Chromosome CM061948.1 <> na Primary Assembly 46506567 na chr28 assembled-molecule 28 Chromosome CM061949.1 <> na Primary Assembly 41397377 na chr29 assembled-molecule 29 Chromosome CM061950.1 <> na Primary Assembly 42168139 na chr30 assembled-molecule 30 Chromosome CM061951.1 <> na Primary Assembly 40534562 na chr31 assembled-molecule 31 Chromosome CM061952.1 <> na Primary Assembly 40078927 na chr32 assembled-molecule 32 Chromosome CM061953.1 <> na Primary Assembly 39511721 na chr33 assembled-molecule 33 Chromosome CM061954.1 <> na Primary Assembly 31676111 na chr34 assembled-molecule 34 Chromosome CM061955.1 <> na Primary Assembly 42211445 na chr35 assembled-molecule 35 Chromosome CM061956.1 <> na Primary Assembly 27286294 na chr36 assembled-molecule 36 Chromosome CM061957.1 <> na Primary Assembly 31160659 na chr37 assembled-molecule 37 Chromosome CM061958.1 <> na Primary Assembly 30902425 na chr38 assembled-molecule 38 Chromosome CM061959.1 <> na Primary Assembly 24703320 na chrX assembled-molecule X Chromosome CM061960.1 <> na Primary Assembly 123320171 na chrY assembled-molecule Y Chromosome CM061961.1 <> na Primary Assembly 3314329 na chrY_unpalced1 unlocalized-scaffold Y Chromosome JARDRE010000041.1 <> na Primary Assembly 1366912 na chrY_unpalced2 unlocalized-scaffold Y Chromosome JARDRE010000042.1 <> na Primary Assembly 593379 na contig_1 unplaced-scaffold na na JARDRE010000043.1 <> na Primary Assembly 5469 na contig_10 unplaced-scaffold na na JARDRE010000052.1 <> na Primary Assembly 95174 na contig_1078 unplaced-scaffold na na JARDRE010000063.1 <> na Primary Assembly 9767 na contig_11 unplaced-scaffold na na JARDRE010000053.1 <> na Primary Assembly 42712 na contig_1108 unplaced-scaffold na na JARDRE010000064.1 <> na Primary Assembly 19175 na contig_1114 unplaced-scaffold na na JARDRE010000065.1 <> na Primary Assembly 3016 na contig_12 unplaced-scaffold na na JARDRE010000054.1 <> na Primary Assembly 52050 na contig_1219 unplaced-scaffold na na JARDRE010000066.1 <> na Primary Assembly 7720 na contig_1221 unplaced-scaffold na na JARDRE010000067.1 <> na Primary Assembly 35308 na contig_13 unplaced-scaffold na na JARDRE010000055.1 <> na Primary Assembly 43676 na contig_1307 unplaced-scaffold na na JARDRE010000068.1 <> na Primary Assembly 50618 na contig_131 unplaced-scaffold na na JARDRE010000069.1 <> na Primary Assembly 5759 na contig_133 unplaced-scaffold na na JARDRE010000070.1 <> na Primary Assembly 39800 na contig_1390_398053_436140_+ unplaced-scaffold na na JARDRE010000071.1 <> na Primary Assembly 38104 na contig_1390_470293_472993_+ unplaced-scaffold na na JARDRE010000072.1 <> na Primary Assembly 2699 na contig_14 unplaced-scaffold na na JARDRE010000056.1 <> na Primary Assembly 9070 na contig_1430_91723_94607_+ unplaced-scaffold na na JARDRE010000073.1 <> na Primary Assembly 2885 na contig_1465 unplaced-scaffold na na JARDRE010000074.1 <> na Primary Assembly 27140 na contig_1466_57706_168132_+ unplaced-scaffold na na JARDRE010000075.1 <> na Primary Assembly 110353 na contig_1474 unplaced-scaffold na na JARDRE010000076.1 <> na Primary Assembly 84214 na contig_1477_1_215090_+ unplaced-scaffold na na JARDRE010000077.1 <> na Primary Assembly 214400 na contig_1498 unplaced-scaffold na na JARDRE010000078.1 <> na Primary Assembly 39282 na contig_15 unplaced-scaffold na na JARDRE010000057.1 <> na Primary Assembly 14354 na contig_1536_1_28580_+ unplaced-scaffold na na JARDRE010000079.1 <> na Primary Assembly 28559 na contig_1557 unplaced-scaffold na na JARDRE010000080.1 <> na Primary Assembly 40206 na contig_1580_1_7507_+ unplaced-scaffold na na JARDRE010000081.1 <> na Primary Assembly 7510 na contig_1584_19244721_19246611_+ unplaced-scaffold na na JARDRE010000082.1 <> na Primary Assembly 1890 na contig_1593 unplaced-scaffold na na JARDRE010000083.1 <> na Primary Assembly 88334 na contig_16 unplaced-scaffold na na JARDRE010000058.1 <> na Primary Assembly 13892 na contig_1657_100177_108452_+ unplaced-scaffold na na JARDRE010000084.1 <> na Primary Assembly 8253 na contig_1679 unplaced-scaffold na na JARDRE010000085.1 <> na Primary Assembly 29993 na contig_17 unplaced-scaffold na na JARDRE010000059.1 <> na Primary Assembly 41728 na contig_1710 unplaced-scaffold na na JARDRE010000086.1 <> na Primary Assembly 25834 na contig_1722_418066_445047_+ unplaced-scaffold na na JARDRE010000087.1 <> na Primary Assembly 26498 na contig_1730 unplaced-scaffold na na JARDRE010000088.1 <> na Primary Assembly 3053 na contig_173_30277_39108_+ unplaced-scaffold na na JARDRE010000089.1 <> na Primary Assembly 8831 na contig_1771 unplaced-scaffold na na JARDRE010000090.1 <> na Primary Assembly 33002 na contig_18 unplaced-scaffold na na JARDRE010000060.1 <> na Primary Assembly 90432 na contig_1828 unplaced-scaffold na na JARDRE010000091.1 <> na Primary Assembly 8700 na contig_1830 unplaced-scaffold na na JARDRE010000092.1 <> na Primary Assembly 2686 na contig_1831 unplaced-scaffold na na JARDRE010000093.1 <> na Primary Assembly 14004 na contig_1833 unplaced-scaffold na na JARDRE010000094.1 <> na Primary Assembly 5493 na contig_186 unplaced-scaffold na na JARDRE010000095.1 <> na Primary Assembly 47427 na contig_1894 unplaced-scaffold na na JARDRE010000096.1 <> na Primary Assembly 25250 na contig_19 unplaced-scaffold na na JARDRE010000061.1 <> na Primary Assembly 57955 na contig_1903 unplaced-scaffold na na JARDRE010000097.1 <> na Primary Assembly 53050 na contig_1990_117005_124107_+ unplaced-scaffold na na JARDRE010000098.1 <> na Primary Assembly 7098 na contig_1990_1_9603_+ unplaced-scaffold na na JARDRE010000099.1 <> na Primary Assembly 9602 na contig_2 unplaced-scaffold na na JARDRE010000044.1 <> na Primary Assembly 733 na contig_20 unplaced-scaffold na na JARDRE010000062.1 <> na Primary Assembly 37730 na contig_2024 unplaced-scaffold na na JARDRE010000100.1 <> na Primary Assembly 2972 na contig_2122_22472_43743_+ unplaced-scaffold na na JARDRE010000101.1 <> na Primary Assembly 21292 na contig_2122_43744_71578_+ unplaced-scaffold na na JARDRE010000102.1 <> na Primary Assembly 27806 na contig_2131_1_23015_+ unplaced-scaffold na na JARDRE010000103.1 <> na Primary Assembly 23028 na contig_2134 unplaced-scaffold na na JARDRE010000104.1 <> na Primary Assembly 24724 na contig_2143_1_5992_+ unplaced-scaffold na na JARDRE010000105.1 <> na Primary Assembly 5935 na contig_2167 unplaced-scaffold na na JARDRE010000106.1 <> na Primary Assembly 35843 na contig_2185_44972_82133_+ unplaced-scaffold na na JARDRE010000107.1 <> na Primary Assembly 37006 na contig_2260 unplaced-scaffold na na JARDRE010000108.1 <> na Primary Assembly 12278 na contig_2265 unplaced-scaffold na na JARDRE010000109.1 <> na Primary Assembly 5884 na contig_231 unplaced-scaffold na na JARDRE010000110.1 <> na Primary Assembly 3710 na contig_2325_1_15376_+ unplaced-scaffold na na JARDRE010000111.1 <> na Primary Assembly 15364 na contig_237 unplaced-scaffold na na JARDRE010000112.1 <> na Primary Assembly 27722 na contig_2376 unplaced-scaffold na na JARDRE010000113.1 <> na Primary Assembly 16943 na contig_2395 unplaced-scaffold na na JARDRE010000114.1 <> na Primary Assembly 33933 na contig_240 unplaced-scaffold na na JARDRE010000115.1 <> na Primary Assembly 2257 na contig_241 unplaced-scaffold na na JARDRE010000116.1 <> na Primary Assembly 11878 na contig_2431 unplaced-scaffold na na JARDRE010000117.1 <> na Primary Assembly 9221 na contig_2478 unplaced-scaffold na na JARDRE010000118.1 <> na Primary Assembly 10202 na contig_2499 unplaced-scaffold na na JARDRE010000119.1 <> na Primary Assembly 16213 na contig_250 unplaced-scaffold na na JARDRE010000120.1 <> na Primary Assembly 2247 na contig_2501 unplaced-scaffold na na JARDRE010000121.1 <> na Primary Assembly 26792 na contig_252 unplaced-scaffold na na JARDRE010000122.1 <> na Primary Assembly 24661 na contig_2593 unplaced-scaffold na na JARDRE010000123.1 <> na Primary Assembly 24684 na contig_260 unplaced-scaffold na na JARDRE010000124.1 <> na Primary Assembly 4883 na contig_2714 unplaced-scaffold na na JARDRE010000125.1 <> na Primary Assembly 48421 na contig_2744 unplaced-scaffold na na JARDRE010000126.1 <> na Primary Assembly 30771 na contig_2770_1_11077_+ unplaced-scaffold na na JARDRE010000127.1 <> na Primary Assembly 11076 na contig_2770_53866_96618_+ unplaced-scaffold na na JARDRE010000128.1 <> na Primary Assembly 42732 na contig_2774 unplaced-scaffold na na JARDRE010000129.1 <> na Primary Assembly 8495 na contig_2775 unplaced-scaffold na na JARDRE010000130.1 <> na Primary Assembly 8413 na contig_2801 unplaced-scaffold na na JARDRE010000131.1 <> na Primary Assembly 18621 na contig_2957 unplaced-scaffold na na JARDRE010000132.1 <> na Primary Assembly 50503 na contig_3 unplaced-scaffold na na JARDRE010000045.1 <> na Primary Assembly 6076 na contig_3009_1_5561_+ unplaced-scaffold na na JARDRE010000133.1 <> na Primary Assembly 5561 na contig_3050 unplaced-scaffold na na JARDRE010000134.1 <> na Primary Assembly 24104 na contig_3062 unplaced-scaffold na na JARDRE010000135.1 <> na Primary Assembly 25954 na contig_3078_1_8992_+ unplaced-scaffold na na JARDRE010000136.1 <> na Primary Assembly 8985 na contig_3086 unplaced-scaffold na na JARDRE010000137.1 <> na Primary Assembly 36486 na contig_314 unplaced-scaffold na na JARDRE010000138.1 <> na Primary Assembly 42025 na contig_3216 unplaced-scaffold na na JARDRE010000139.1 <> na Primary Assembly 45600 na contig_3237 unplaced-scaffold na na JARDRE010000140.1 <> na Primary Assembly 162562 na contig_341_11349_43680_+ unplaced-scaffold na na JARDRE010000141.1 <> na Primary Assembly 32332 na contig_369_1_43717_+ unplaced-scaffold na na JARDRE010000142.1 <> na Primary Assembly 43699 na contig_4 unplaced-scaffold na na JARDRE010000046.1 <> na Primary Assembly 105280 na contig_445_178255_186258_+ unplaced-scaffold na na JARDRE010000143.1 <> na Primary Assembly 8003 na contig_445_199095_216906_+ unplaced-scaffold na na JARDRE010000144.1 <> na Primary Assembly 17745 na contig_452_1_14228_+ unplaced-scaffold na na JARDRE010000145.1 <> na Primary Assembly 14226 na contig_456_1_5537_+ unplaced-scaffold na na JARDRE010000146.1 <> na Primary Assembly 5528 na contig_5 unplaced-scaffold na na JARDRE010000047.1 <> na Primary Assembly 94493 na contig_506_28891_30395_+ unplaced-scaffold na na JARDRE010000147.1 <> na Primary Assembly 1504 na contig_561_213198_224188_+ unplaced-scaffold na na JARDRE010000148.1 <> na Primary Assembly 10963 na contig_561_93002_102807_+ unplaced-scaffold na na JARDRE010000149.1 <> na Primary Assembly 9791 na contig_587 unplaced-scaffold na na JARDRE010000151.1 <> na Primary Assembly 20251 na contig_58_1_32614_+ unplaced-scaffold na na JARDRE010000150.1 <> na Primary Assembly 32536 na contig_6 unplaced-scaffold na na JARDRE010000048.1 <> na Primary Assembly 186523 na contig_602_1_20063_+ unplaced-scaffold na na JARDRE010000152.1 <> na Primary Assembly 20055 na contig_658 unplaced-scaffold na na JARDRE010000153.1 <> na Primary Assembly 26481 na contig_7 unplaced-scaffold na na JARDRE010000049.1 <> na Primary Assembly 62524 na contig_742_15150_29763_+ unplaced-scaffold na na JARDRE010000154.1 <> na Primary Assembly 14562 na contig_8 unplaced-scaffold na na JARDRE010000050.1 <> na Primary Assembly 97140 na contig_820 unplaced-scaffold na na JARDRE010000155.1 <> na Primary Assembly 53786 na contig_857_1_5656_+ unplaced-scaffold na na JARDRE010000156.1 <> na Primary Assembly 5634 na contig_871_296844_305343_+ unplaced-scaffold na na JARDRE010000157.1 <> na Primary Assembly 8494 na contig_875 unplaced-scaffold na na JARDRE010000158.1 <> na Primary Assembly 27175 na contig_9 unplaced-scaffold na na JARDRE010000051.1 <> na Primary Assembly 42108 na contig_994_22855_30878_+ unplaced-scaffold na na JARDRE010000159.1 <> na Primary Assembly 7980 na