# Assembly name: bStrAlu1.hap2 # Organism name: Strix aluco (Tawny owl) # Isolate: bStrAlu1 # Sex: female # Taxid: 111821 # BioSample: SAMN37055808 # BioProject: PRJNA1007266 # Submitter: Vertebrate Genomes Project # Date: 2023-09-25 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAVFLE01 # Assembly method: Hifiasm + Hi-C phasing v. 0.18.5+galaxy1; purge_dups v. 1.2.6+galaxy0; Bionano Solve v. 3.7; yahs v. 1.2a.2+galaxy0 # Expected final version: no # Genome coverage: 40.0x # Sequencing technology: PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_031877785.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_031877985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM062943.1 <> na Primary Assembly 173556185 na SUPER_2 assembled-molecule 2 Chromosome CM062944.1 <> na Primary Assembly 137133216 na SUPER_3 assembled-molecule 3 Chromosome CM062945.1 <> na Primary Assembly 132664630 na SUPER_4 assembled-molecule 4 Chromosome CM062946.1 <> na Primary Assembly 132982767 na SUPER_5 assembled-molecule 5 Chromosome CM062947.1 <> na Primary Assembly 89677789 na SUPER_6 assembled-molecule 6 Chromosome CM062948.1 <> na Primary Assembly 45228334 na SUPER_7 assembled-molecule 7 Chromosome CM062949.1 <> na Primary Assembly 42503930 na SUPER_8 assembled-molecule 8 Chromosome CM062950.1 <> na Primary Assembly 38562640 na SUPER_9 assembled-molecule 9 Chromosome CM062951.1 <> na Primary Assembly 32883694 na SUPER_10 assembled-molecule 10 Chromosome CM062952.1 <> na Primary Assembly 24618463 na SUPER_11 assembled-molecule 11 Chromosome CM062953.1 <> na Primary Assembly 26388188 na SUPER_12 assembled-molecule 12 Chromosome CM062954.1 <> na Primary Assembly 25130097 na SUPER_13 assembled-molecule 13 Chromosome CM062955.1 <> na Primary Assembly 24466543 na SUPER_14 assembled-molecule 14 Chromosome CM062956.1 <> na Primary Assembly 25002112 na SUPER_15 assembled-molecule 15 Chromosome CM062957.1 <> na Primary Assembly 21543093 na SUPER_16 assembled-molecule 16 Chromosome CM062958.1 <> na Primary Assembly 21934497 na SUPER_17 assembled-molecule 17 Chromosome CM062959.1 <> na Primary Assembly 20537204 na SUPER_18 assembled-molecule 18 Chromosome CM062960.1 <> na Primary Assembly 21164789 na SUPER_19 assembled-molecule 19 Chromosome CM062961.1 <> na Primary Assembly 13287723 na SUPER_20 assembled-molecule 20 Chromosome CM062962.1 <> na Primary Assembly 13108191 na SUPER_21 assembled-molecule 21 Chromosome CM062963.1 <> na Primary Assembly 14659580 na SUPER_22 assembled-molecule 22 Chromosome CM062964.1 <> na Primary Assembly 10143748 na SUPER_23 assembled-molecule 23 Chromosome CM062965.1 <> na Primary Assembly 11788618 na SUPER_24 assembled-molecule 24 Chromosome CM062966.1 <> na Primary Assembly 8779538 na SUPER_25 assembled-molecule 25 Chromosome CM062967.1 <> na Primary Assembly 7600749 na SUPER_26 assembled-molecule 26 Chromosome CM062968.1 <> na Primary Assembly 10847529 na SUPER_27 assembled-molecule 27 Chromosome CM062969.1 <> na Primary Assembly 8255508 na SUPER_28 assembled-molecule 28 Chromosome CM062970.1 <> na Primary Assembly 6280982 na SUPER_29 assembled-molecule 29 Chromosome CM062971.1 <> na Primary Assembly 6427671 na SUPER_30 assembled-molecule 30 Chromosome CM062972.1 <> na Primary Assembly 3563700 na SUPER_31 assembled-molecule 31 Chromosome CM062973.1 <> na Primary Assembly 4976384 na SUPER_32 assembled-molecule 32 Chromosome CM062974.1 <> na Primary Assembly 1783705 na SUPER_33 assembled-molecule 33 Chromosome CM062975.1 <> na Primary Assembly 2334759 na SUPER_34 assembled-molecule 34 Chromosome CM062976.1 <> na Primary Assembly 3180078 na SUPER_35 assembled-molecule 35 Chromosome CM062977.1 <> na Primary Assembly 3951520 na SUPER_36 assembled-molecule 36 Chromosome CM062978.1 <> na Primary Assembly 1151644 na SUPER_37 assembled-molecule 37 Chromosome CM062979.1 <> na Primary Assembly 1323400 na SUPER_38 assembled-molecule 38 Chromosome CM062980.1 <> na Primary Assembly 852672 na SUPER_39 assembled-molecule 39 Chromosome CM062981.1 <> na Primary Assembly 937918 na HAP2_SCAFFOLD_100 unplaced-scaffold na na JAVFLE010000063.1 <> na Primary Assembly 112465 na HAP2_SCAFFOLD_101 unplaced-scaffold na na JAVFLE010000142.1 <> na Primary Assembly 109329 na HAP2_SCAFFOLD_102 unplaced-scaffold na na JAVFLE010000046.1 <> na Primary Assembly 108628 na HAP2_SCAFFOLD_103 unplaced-scaffold na na JAVFLE010000157.1 <> na Primary Assembly 107858 na HAP2_SCAFFOLD_104 unplaced-scaffold na na JAVFLE010000104.1 <> na Primary Assembly 104099 na HAP2_SCAFFOLD_105 unplaced-scaffold na na JAVFLE010000040.1 <> na Primary Assembly 100347 na HAP2_SCAFFOLD_106 unplaced-scaffold na na JAVFLE010000138.1 <> na Primary Assembly 97875 na HAP2_SCAFFOLD_107 unplaced-scaffold na na JAVFLE010000128.1 <> na Primary Assembly 95911 na HAP2_SCAFFOLD_108 unplaced-scaffold na na JAVFLE010000149.1 <> na Primary Assembly 93529 na HAP2_SCAFFOLD_109 unplaced-scaffold na na JAVFLE010000118.1 <> na Primary Assembly 91596 na HAP2_SCAFFOLD_110 unplaced-scaffold na na JAVFLE010000059.1 <> na Primary Assembly 87115 na HAP2_SCAFFOLD_111 unplaced-scaffold na na JAVFLE010000148.1 <> na Primary Assembly 86616 na HAP2_SCAFFOLD_112 unplaced-scaffold na na JAVFLE010000043.1 <> na Primary Assembly 85180 na HAP2_SCAFFOLD_113 unplaced-scaffold na na JAVFLE010000160.1 <> na Primary Assembly 80442 na HAP2_SCAFFOLD_114 unplaced-scaffold na na JAVFLE010000111.1 <> na Primary Assembly 80111 na HAP2_SCAFFOLD_115 unplaced-scaffold na na JAVFLE010000049.1 <> na Primary Assembly 79923 na HAP2_SCAFFOLD_116 unplaced-scaffold na na JAVFLE010000133.1 <> na Primary Assembly 79677 na HAP2_SCAFFOLD_117 unplaced-scaffold na na JAVFLE010000127.1 <> na Primary Assembly 77536 na HAP2_SCAFFOLD_118 unplaced-scaffold na na JAVFLE010000141.1 <> na Primary Assembly 76666 na HAP2_SCAFFOLD_119 unplaced-scaffold na na JAVFLE010000122.1 <> na Primary Assembly 76118 na HAP2_SCAFFOLD_120 unplaced-scaffold na na JAVFLE010000093.1 <> na Primary Assembly 72554 na HAP2_SCAFFOLD_121 unplaced-scaffold na na JAVFLE010000123.1 <> na Primary Assembly 71931 na HAP2_SCAFFOLD_122 unplaced-scaffold na na JAVFLE010000079.1 <> na Primary Assembly 71710 na HAP2_SCAFFOLD_123 unplaced-scaffold na na JAVFLE010000112.1 <> na Primary Assembly 69658 na HAP2_SCAFFOLD_124 unplaced-scaffold na na JAVFLE010000159.1 <> na Primary Assembly 69452 na HAP2_SCAFFOLD_125 unplaced-scaffold na na JAVFLE010000084.1 <> na Primary Assembly 68393 na HAP2_SCAFFOLD_126 unplaced-scaffold na na JAVFLE010000168.1 <> na Primary Assembly 66550 na HAP2_SCAFFOLD_127 unplaced-scaffold na na JAVFLE010000176.1 <> na Primary Assembly 66147 na HAP2_SCAFFOLD_128 unplaced-scaffold na na JAVFLE010000115.1 <> na Primary Assembly 64755 na HAP2_SCAFFOLD_129 unplaced-scaffold na na JAVFLE010000147.1 <> na Primary Assembly 64520 na HAP2_SCAFFOLD_130 unplaced-scaffold na na JAVFLE010000088.1 <> na Primary Assembly 64072 na HAP2_SCAFFOLD_131 unplaced-scaffold na na JAVFLE010000109.1 <> na Primary Assembly 63067 na HAP2_SCAFFOLD_132 unplaced-scaffold na na JAVFLE010000068.1 <> na Primary Assembly 61517 na HAP2_SCAFFOLD_133 unplaced-scaffold na na JAVFLE010000124.1 <> na Primary Assembly 61380 na HAP2_SCAFFOLD_134 unplaced-scaffold na na JAVFLE010000150.1 <> na Primary Assembly 60063 na HAP2_SCAFFOLD_135 unplaced-scaffold na na JAVFLE010000072.1 <> na Primary Assembly 58717 na HAP2_SCAFFOLD_136 unplaced-scaffold na na JAVFLE010000174.1 <> na Primary Assembly 58179 na HAP2_SCAFFOLD_137 unplaced-scaffold na na JAVFLE010000169.1 <> na Primary Assembly 58138 na HAP2_SCAFFOLD_138 unplaced-scaffold na na JAVFLE010000105.1 <> na Primary Assembly 57371 na HAP2_SCAFFOLD_139 unplaced-scaffold na na JAVFLE010000158.1 <> na Primary Assembly 57097 na HAP2_SCAFFOLD_140 unplaced-scaffold na na JAVFLE010000092.1 <> na Primary Assembly 55281 na HAP2_SCAFFOLD_141 unplaced-scaffold na na JAVFLE010000107.1 <> na Primary Assembly 54914 na HAP2_SCAFFOLD_142 unplaced-scaffold na na JAVFLE010000073.1 <> na Primary Assembly 54728 na HAP2_SCAFFOLD_143 unplaced-scaffold na na JAVFLE010000119.1 <> na Primary Assembly 54297 na HAP2_SCAFFOLD_144 unplaced-scaffold na na JAVFLE010000144.1 <> na Primary Assembly 51447 na HAP2_SCAFFOLD_145 unplaced-scaffold na na JAVFLE010000069.1 <> na Primary Assembly 50723 na HAP2_SCAFFOLD_146 unplaced-scaffold na na JAVFLE010000182.1 <> na Primary Assembly 50341 na HAP2_SCAFFOLD_147 unplaced-scaffold na na JAVFLE010000170.1 <> na Primary Assembly 47585 na HAP2_SCAFFOLD_148 unplaced-scaffold na na JAVFLE010000114.1 <> na Primary Assembly 45326 na HAP2_SCAFFOLD_149 unplaced-scaffold na na JAVFLE010000155.1 <> na Primary Assembly 44871 na HAP2_SCAFFOLD_150 unplaced-scaffold na na JAVFLE010000058.1 <> na Primary Assembly 44551 na HAP2_SCAFFOLD_151 unplaced-scaffold na na JAVFLE010000152.1 <> na Primary Assembly 44520 na HAP2_SCAFFOLD_152 unplaced-scaffold na na JAVFLE010000044.1 <> na Primary Assembly 44152 na HAP2_SCAFFOLD_153 unplaced-scaffold na na JAVFLE010000161.1 <> na Primary Assembly 44048 na HAP2_SCAFFOLD_154 unplaced-scaffold na na JAVFLE010000110.1 <> na Primary Assembly 43001 na HAP2_SCAFFOLD_155 unplaced-scaffold na na JAVFLE010000047.1 <> na Primary Assembly 42719 na HAP2_SCAFFOLD_156 unplaced-scaffold na na JAVFLE010000135.1 <> na Primary Assembly 42095 na HAP2_SCAFFOLD_157 unplaced-scaffold na na JAVFLE010000126.1 <> na Primary Assembly 41958 na HAP2_SCAFFOLD_158 unplaced-scaffold na na JAVFLE010000140.1 <> na Primary Assembly 40960 na HAP2_SCAFFOLD_159 unplaced-scaffold na na JAVFLE010000121.1 <> na Primary Assembly 40752 na HAP2_SCAFFOLD_160 unplaced-scaffold na na JAVFLE010000101.1 <> na Primary Assembly 40508 na HAP2_SCAFFOLD_161 unplaced-scaffold na na JAVFLE010000120.1 <> na Primary Assembly 39988 na HAP2_SCAFFOLD_162 unplaced-scaffold na na JAVFLE010000087.1 <> na Primary Assembly 38767 na HAP2_SCAFFOLD_163 unplaced-scaffold na na JAVFLE010000103.1 <> na Primary Assembly 38202 na HAP2_SCAFFOLD_164 unplaced-scaffold na na JAVFLE010000156.1 <> na Primary Assembly 37970 na HAP2_SCAFFOLD_165 unplaced-scaffold na na JAVFLE010000081.1 <> na Primary Assembly 37511 na HAP2_SCAFFOLD_166 unplaced-scaffold na na JAVFLE010000172.1 <> na Primary Assembly 37400 na HAP2_SCAFFOLD_167 unplaced-scaffold na na JAVFLE010000180.1 <> na Primary Assembly 36713 na HAP2_SCAFFOLD_168 unplaced-scaffold na na JAVFLE010000125.1 <> na Primary Assembly 36563 na HAP2_SCAFFOLD_169 unplaced-scaffold na na JAVFLE010000145.1 <> na Primary Assembly 36188 na HAP2_SCAFFOLD_170 unplaced-scaffold na na JAVFLE010000131.1 <> na Primary Assembly 34870 na HAP2_SCAFFOLD_171 unplaced-scaffold na na JAVFLE010000070.1 <> na Primary Assembly 33906 na HAP2_SCAFFOLD_172 unplaced-scaffold na na JAVFLE010000113.1 <> na Primary Assembly 32840 na HAP2_SCAFFOLD_173 unplaced-scaffold na na JAVFLE010000080.1 <> na Primary Assembly 32624 na HAP2_SCAFFOLD_174 unplaced-scaffold na na JAVFLE010000045.1 <> na Primary Assembly 32537 na HAP2_SCAFFOLD_175 unplaced-scaffold na na JAVFLE010000106.1 <> na Primary Assembly 30765 na HAP2_SCAFFOLD_176 unplaced-scaffold na na JAVFLE010000067.1 <> na Primary Assembly 29414 na HAP2_SCAFFOLD_177 unplaced-scaffold na na JAVFLE010000062.1 <> na Primary Assembly 28728 na HAP2_SCAFFOLD_178 unplaced-scaffold na na JAVFLE010000075.1 <> na Primary Assembly 27542 na HAP2_SCAFFOLD_179 unplaced-scaffold na na JAVFLE010000053.1 <> na Primary Assembly 27535 na HAP2_SCAFFOLD_180 unplaced-scaffold na na JAVFLE010000165.1 <> na Primary Assembly 27492 na HAP2_SCAFFOLD_181 unplaced-scaffold na na JAVFLE010000048.1 <> na Primary Assembly 25646 na HAP2_SCAFFOLD_182 unplaced-scaffold na na JAVFLE010000143.1 <> na Primary Assembly 25256 na HAP2_SCAFFOLD_183 unplaced-scaffold na na JAVFLE010000055.1 <> na Primary Assembly 25207 na HAP2_SCAFFOLD_184 unplaced-scaffold na na JAVFLE010000071.1 <> na Primary Assembly 23762 na HAP2_SCAFFOLD_185 unplaced-scaffold na na JAVFLE010000151.1 <> na Primary Assembly 23679 na HAP2_SCAFFOLD_186 unplaced-scaffold na na JAVFLE010000095.1 <> na Primary Assembly 23593 na HAP2_SCAFFOLD_187 unplaced-scaffold na na JAVFLE010000090.1 <> na Primary Assembly 23546 na HAP2_SCAFFOLD_188 unplaced-scaffold na na JAVFLE010000042.1 <> na Primary Assembly 23046 na HAP2_SCAFFOLD_189 unplaced-scaffold na na JAVFLE010000082.1 <> na Primary Assembly 22973 na HAP2_SCAFFOLD_190 unplaced-scaffold na na JAVFLE010000146.1 <> na Primary Assembly 22294 na HAP2_SCAFFOLD_191 unplaced-scaffold na na JAVFLE010000060.1 <> na Primary Assembly 21965 na HAP2_SCAFFOLD_192 unplaced-scaffold na na JAVFLE010000171.1 <> na Primary Assembly 21581 na HAP2_SCAFFOLD_193 unplaced-scaffold na na JAVFLE010000064.1 <> na Primary Assembly 21122 na HAP2_SCAFFOLD_194 unplaced-scaffold na na JAVFLE010000089.1 <> na Primary Assembly 20936 na HAP2_SCAFFOLD_195 unplaced-scaffold na na JAVFLE010000167.1 <> na Primary Assembly 20701 na HAP2_SCAFFOLD_196 unplaced-scaffold na na JAVFLE010000085.1 <> na Primary Assembly 20699 na HAP2_SCAFFOLD_197 unplaced-scaffold na na JAVFLE010000074.1 <> na Primary Assembly 19241 na HAP2_SCAFFOLD_198 unplaced-scaffold na na JAVFLE010000061.1 <> na Primary Assembly 18870 na HAP2_SCAFFOLD_199 unplaced-scaffold na na JAVFLE010000094.1 <> na Primary Assembly 18545 na HAP2_SCAFFOLD_200 unplaced-scaffold na na JAVFLE010000076.1 <> na Primary Assembly 18020 na HAP2_SCAFFOLD_201 unplaced-scaffold na na JAVFLE010000139.1 <> na Primary Assembly 17903 na HAP2_SCAFFOLD_202 unplaced-scaffold na na JAVFLE010000096.1 <> na Primary Assembly 17138 na HAP2_SCAFFOLD_203 unplaced-scaffold na na JAVFLE010000129.1 <> na Primary Assembly 15593 na HAP2_SCAFFOLD_204 unplaced-scaffold na na JAVFLE010000178.1 <> na Primary Assembly 15090 na HAP2_SCAFFOLD_205 unplaced-scaffold na na JAVFLE010000099.1 <> na Primary Assembly 14217 na HAP2_SCAFFOLD_33 unplaced-scaffold na na JAVFLE010000177.1 <> na Primary Assembly 102824 na HAP2_SCAFFOLD_38 unplaced-scaffold na na JAVFLE010000098.1 <> na Primary Assembly 3275708 na HAP2_SCAFFOLD_40 unplaced-scaffold na na JAVFLE010000137.1 <> na Primary Assembly 2927016 na HAP2_SCAFFOLD_41 unplaced-scaffold na na JAVFLE010000134.1 <> na Primary Assembly 2862029 na HAP2_SCAFFOLD_42 unplaced-scaffold na na JAVFLE010000166.1 <> na Primary Assembly 2688848 na HAP2_SCAFFOLD_43 unplaced-scaffold na na JAVFLE010000175.1 <> na Primary Assembly 2558955 na HAP2_SCAFFOLD_44 unplaced-scaffold na na JAVFLE010000181.1 <> na Primary Assembly 2392473 na HAP2_SCAFFOLD_46 unplaced-scaffold na na JAVFLE010000173.1 <> na Primary Assembly 2228708 na HAP2_SCAFFOLD_47 unplaced-scaffold na na JAVFLE010000066.1 <> na Primary Assembly 2169416 na HAP2_SCAFFOLD_49 unplaced-scaffold na na JAVFLE010000083.1 <> na Primary Assembly 1838304 na HAP2_SCAFFOLD_50 unplaced-scaffold na na JAVFLE010000164.1 <> na Primary Assembly 1829616 na HAP2_SCAFFOLD_55 unplaced-scaffold na na JAVFLE010000154.1 <> na Primary Assembly 1349800 na HAP2_SCAFFOLD_56 unplaced-scaffold na na JAVFLE010000108.1 <> na Primary Assembly 1328932 na HAP2_SCAFFOLD_58 unplaced-scaffold na na JAVFLE010000052.1 <> na Primary Assembly 1260851 na HAP2_SCAFFOLD_60 unplaced-scaffold na na JAVFLE010000086.1 <> na Primary Assembly 1074134 na HAP2_SCAFFOLD_63 unplaced-scaffold na na JAVFLE010000050.1 <> na Primary Assembly 935470 na HAP2_SCAFFOLD_64 unplaced-scaffold na na JAVFLE010000057.1 <> na Primary Assembly 908090 na HAP2_SCAFFOLD_65 unplaced-scaffold na na JAVFLE010000077.1 <> na Primary Assembly 892286 na HAP2_SCAFFOLD_67 unplaced-scaffold na na JAVFLE010000163.1 <> na Primary Assembly 719583 na HAP2_SCAFFOLD_68 unplaced-scaffold na na JAVFLE010000116.1 <> na Primary Assembly 717249 na HAP2_SCAFFOLD_73 unplaced-scaffold na na JAVFLE010000132.1 <> na Primary Assembly 559824 na HAP2_SCAFFOLD_76 unplaced-scaffold na na JAVFLE010000130.1 <> na Primary Assembly 493309 na HAP2_SCAFFOLD_77 unplaced-scaffold na na JAVFLE010000102.1 <> na Primary Assembly 474673 na HAP2_SCAFFOLD_79 unplaced-scaffold na na JAVFLE010000054.1 <> na Primary Assembly 434663 na HAP2_SCAFFOLD_81 unplaced-scaffold na na JAVFLE010000078.1 <> na Primary Assembly 409108 na HAP2_SCAFFOLD_82 unplaced-scaffold na na JAVFLE010000041.1 <> na Primary Assembly 400842 na HAP2_SCAFFOLD_83 unplaced-scaffold na na JAVFLE010000051.1 <> na Primary Assembly 359287 na HAP2_SCAFFOLD_84 unplaced-scaffold na na JAVFLE010000056.1 <> na Primary Assembly 344067 na HAP2_SCAFFOLD_87 unplaced-scaffold na na JAVFLE010000162.1 <> na Primary Assembly 255423 na HAP2_SCAFFOLD_88 unplaced-scaffold na na JAVFLE010000117.1 <> na Primary Assembly 245482 na HAP2_SCAFFOLD_93 unplaced-scaffold na na JAVFLE010000100.1 <> na Primary Assembly 203958 na HAP2_SCAFFOLD_94 unplaced-scaffold na na JAVFLE010000097.1 <> na Primary Assembly 146199 na HAP2_SCAFFOLD_95 unplaced-scaffold na na JAVFLE010000065.1 <> na Primary Assembly 140728 na HAP2_SCAFFOLD_96 unplaced-scaffold na na JAVFLE010000091.1 <> na Primary Assembly 139719 na HAP2_SCAFFOLD_97 unplaced-scaffold na na JAVFLE010000136.1 <> na Primary Assembly 131938 na HAP2_SCAFFOLD_98 unplaced-scaffold na na JAVFLE010000179.1 <> na Primary Assembly 118878 na HAP2_SCAFFOLD_99 unplaced-scaffold na na JAVFLE010000153.1 <> na Primary Assembly 113073 na H_1 unplaced-scaffold na na JAVFLE010000183.1 <> na Primary Assembly 2184795 na H_2 unplaced-scaffold na na JAVFLE010000184.1 <> na Primary Assembly 1325657 na