# Assembly name: Trm_1.0 # Organism name: Columba livia (rock pigeon) # Infraspecific name: breed=Tarim pigeon # Isolate: TR01 # Sex: female # Taxid: 8932 # BioSample: SAMN37449930 # BioProject: PRJNA1018817 # Submitter: Shanghai Jiao Tong University # Date: 2023-10-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAVSJG01 # Assembly method: hifiasm v. 0.16.1; nextDenovo v. 2.5.0 # Expected final version: yes # Genome coverage: 32.4x # Sequencing technology: Oxford Nanopore; PacBio # GenBank assembly accession: GCA_032719375.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_032719475.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold1 assembled-molecule 1 Chromosome CM064921.1 <> na Primary Assembly 226729412 na scaffold2 assembled-molecule 2 Chromosome CM064922.1 <> na Primary Assembly 237747258 na scaffold3 assembled-molecule 3 Chromosome CM064923.1 <> na Primary Assembly 126582754 na scaffold5 assembled-molecule 4 Chromosome CM064924.1 <> na Primary Assembly 78925815 na scaffold6 assembled-molecule 5 Chromosome CM064925.1 <> na Primary Assembly 80973170 na scaffold7 assembled-molecule 6 Chromosome CM064926.1 <> na Primary Assembly 40810517 na scaffold8 assembled-molecule 7 Chromosome CM064927.1 <> na Primary Assembly 39003881 na scaffold9 assembled-molecule 8 Chromosome CM064928.1 <> na Primary Assembly 33866362 na scaffold10 assembled-molecule 9 Chromosome CM064929.1 <> na Primary Assembly 27568883 na scaffold11 assembled-molecule 10 Chromosome CM064930.1 <> na Primary Assembly 22881148 na scaffold12 assembled-molecule 11 Chromosome CM064931.1 <> na Primary Assembly 22725794 na scaffold13 assembled-molecule 12 Chromosome CM064932.1 <> na Primary Assembly 22324455 na scaffold14 assembled-molecule 13 Chromosome CM064933.1 <> na Primary Assembly 21339177 na scaffold15 assembled-molecule 14 Chromosome CM064934.1 <> na Primary Assembly 20057415 na scaffold16 assembled-molecule 15 Chromosome CM064935.1 <> na Primary Assembly 17474433 na scaffold17 assembled-molecule 16 Chromosome CM064936.1 <> na Primary Assembly 16065756 na scaffold18 assembled-molecule 17 Chromosome CM064937.1 <> na Primary Assembly 14487720 na scaffold19 assembled-molecule 18 Chromosome CM064938.1 <> na Primary Assembly 13158788 na scaffold20 assembled-molecule 19 Chromosome CM064939.1 <> na Primary Assembly 11937607 na scaffold21 assembled-molecule 20 Chromosome CM064940.1 <> na Primary Assembly 18974227 na scaffold22 assembled-molecule 21 Chromosome CM064941.1 <> na Primary Assembly 11287876 na scaffold23 assembled-molecule 22 Chromosome CM064942.1 <> na Primary Assembly 8047528 na scaffold24 assembled-molecule 23 Chromosome CM064943.1 <> na Primary Assembly 7654827 na scaffold25 assembled-molecule 24 Chromosome CM064944.1 <> na Primary Assembly 7291589 na scaffold26 assembled-molecule 25 Chromosome CM064945.1 <> na Primary Assembly 6797193 na scaffold27 assembled-molecule 26 Chromosome CM064946.1 <> na Primary Assembly 5890668 na scaffold28 assembled-molecule 27 Chromosome CM064947.1 <> na Primary Assembly 3687877 na scaffold29 assembled-molecule 28 Chromosome CM064948.1 <> na Primary Assembly 2863614 na scaffold30 assembled-molecule 29 Chromosome CM064949.1 <> na Primary Assembly 2857574 na scaffold31 assembled-molecule 30 Chromosome CM064951.1 <> na Primary Assembly 2443232 na scaffold32 assembled-molecule 31 Chromosome CM064952.1 <> na Primary Assembly 2367475 na scaffold33 assembled-molecule 32 Chromosome CM064953.1 <> na Primary Assembly 2210131 na scaffold34 assembled-molecule 33 Chromosome CM064954.1 <> na Primary Assembly 2043395 na scaffold35 assembled-molecule 34 Chromosome CM064955.1 <> na Primary Assembly 1611946 na scaffold36 assembled-molecule 35 Chromosome CM064956.1 <> na Primary Assembly 1609047 na scaffold37 assembled-molecule 36 Chromosome CM064957.1 <> na Primary Assembly 1734736 na scaffold38 assembled-molecule 37 Chromosome CM064958.1 <> na Primary Assembly 1587429 na scaffold39 assembled-molecule 38 Chromosome CM064959.1 <> na Primary Assembly 1369699 na scaffold40 assembled-molecule 39 Chromosome CM064960.1 <> na Primary Assembly 1336500 na .1_RagTag assembled-molecule W Chromosome CM064961.1 <> na Primary Assembly 11939718 na scaffold4 assembled-molecule Z Chromosome CM064950.1 <> na Primary Assembly 95288922 na scaffold41 unplaced-scaffold na na JAVSJG010000041.1 <> na Primary Assembly 1303720 na scaffold42 unplaced-scaffold na na JAVSJG010000042.1 <> na Primary Assembly 1147613 na scaffold43 unplaced-scaffold na na JAVSJG010000043.1 <> na Primary Assembly 1113299 na scaffold44 unplaced-scaffold na na JAVSJG010000044.1 <> na Primary Assembly 1075169 na scaffold45 unplaced-scaffold na na JAVSJG010000045.1 <> na Primary Assembly 1073909 na scaffold46 unplaced-scaffold na na JAVSJG010000046.1 <> na Primary Assembly 955677 na scaffold47 unplaced-scaffold na na JAVSJG010000047.1 <> na Primary Assembly 899698 na scaffold48 unplaced-scaffold na na JAVSJG010000048.1 <> na Primary Assembly 807489 na scaffold49 unplaced-scaffold na na JAVSJG010000049.1 <> na Primary Assembly 774113 na scaffold50 unplaced-scaffold na na JAVSJG010000050.1 <> na Primary Assembly 763542 na scaffold51 unplaced-scaffold na na JAVSJG010000051.1 <> na Primary Assembly 743847 na scaffold52 unplaced-scaffold na na JAVSJG010000052.1 <> na Primary Assembly 648853 na scaffold53 unplaced-scaffold na na JAVSJG010000053.1 <> na Primary Assembly 584499 na scaffold54 unplaced-scaffold na na JAVSJG010000054.1 <> na Primary Assembly 583287 na scaffold55 unplaced-scaffold na na JAVSJG010000055.1 <> na Primary Assembly 582848 na scaffold56 unplaced-scaffold na na JAVSJG010000056.1 <> na Primary Assembly 540905 na scaffold57 unplaced-scaffold na na JAVSJG010000057.1 <> na Primary Assembly 509734 na scaffold58 unplaced-scaffold na na JAVSJG010000058.1 <> na Primary Assembly 498487 na scaffold59 unplaced-scaffold na na JAVSJG010000059.1 <> na Primary Assembly 463215 na scaffold60 unplaced-scaffold na na JAVSJG010000060.1 <> na Primary Assembly 414157 na scaffold61 unplaced-scaffold na na JAVSJG010000061.1 <> na Primary Assembly 413709 na scaffold62 unplaced-scaffold na na JAVSJG010000062.1 <> na Primary Assembly 412906 na scaffold63 unplaced-scaffold na na JAVSJG010000063.1 <> na Primary Assembly 386663 na scaffold64 unplaced-scaffold na na JAVSJG010000064.1 <> na Primary Assembly 378200 na scaffold65 unplaced-scaffold na na JAVSJG010000065.1 <> na Primary Assembly 375077 na scaffold66 unplaced-scaffold na na JAVSJG010000066.1 <> na Primary Assembly 360932 na scaffold67 unplaced-scaffold na na JAVSJG010000067.1 <> na Primary Assembly 300550 na scaffold68 unplaced-scaffold na na JAVSJG010000068.1 <> na Primary Assembly 297668 na scaffold69 unplaced-scaffold na na JAVSJG010000069.1 <> na Primary Assembly 297344 na scaffold70 unplaced-scaffold na na JAVSJG010000070.1 <> na Primary Assembly 291177 na scaffold71 unplaced-scaffold na na JAVSJG010000071.1 <> na Primary Assembly 283224 na scaffold72 unplaced-scaffold na na JAVSJG010000072.1 <> na Primary Assembly 262251 na scaffold73 unplaced-scaffold na na JAVSJG010000073.1 <> na Primary Assembly 176628 na scaffold74 unplaced-scaffold na na JAVSJG010000074.1 <> na Primary Assembly 130892 na scaffold75 unplaced-scaffold na na JAVSJG010000075.1 <> na Primary Assembly 110588 na scaffold76 unplaced-scaffold na na JAVSJG010000076.1 <> na Primary Assembly 103613 na scaffold77 unplaced-scaffold na na JAVSJG010000077.1 <> na Primary Assembly 97621 na scaffold78 unplaced-scaffold na na JAVSJG010000078.1 <> na Primary Assembly 89854 na