# Assembly name: klBraLanc5.hap1 # Organism name: Branchiostoma lanceolatum (amphioxus) # Isolate: klBraLanc5 # Sex: female # Taxid: 7740 # BioSample: SAMN38372375 # BioProject: PRJNA1044121 # Submitter: Vertebrate Genomes Project # Date: 2024-01-05 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JAXKVT01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; YAHS Hi-C scaffolding v. 1.2a.2 + galaxy1; Curation v. 2023-06-21 # Expected final version: no # Genome coverage: 87.25x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Representative Genome # GenBank assembly accession: GCA_035149815.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_035149825.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM068866.1 <> na Primary Assembly 44081015 na SUPER_2 assembled-molecule 2 Chromosome CM068867.1 <> na Primary Assembly 41546316 na SUPER_3 assembled-molecule 3 Chromosome CM068868.1 <> na Primary Assembly 34407287 na SUPER_4 assembled-molecule 4 Chromosome CM068869.1 <> na Primary Assembly 32634908 na SUPER_5 assembled-molecule 5 Chromosome CM068870.1 <> na Primary Assembly 25675203 na SUPER_6 assembled-molecule 6 Chromosome CM068871.1 <> na Primary Assembly 24002649 na SUPER_7 assembled-molecule 7 Chromosome CM068872.1 <> na Primary Assembly 23140439 na SUPER_8 assembled-molecule 8 Chromosome CM068873.1 <> na Primary Assembly 23005392 na SUPER_9 assembled-molecule 9 Chromosome CM068874.1 <> na Primary Assembly 22458412 na SUPER_10 assembled-molecule 10 Chromosome CM068875.1 <> na Primary Assembly 20775821 na SUPER_11 assembled-molecule 11 Chromosome CM068876.1 <> na Primary Assembly 19839374 na SUPER_12 assembled-molecule 12 Chromosome CM068877.1 <> na Primary Assembly 19689430 na SUPER_13 assembled-molecule 13 Chromosome CM068878.1 <> na Primary Assembly 19575921 na SUPER_14 assembled-molecule 14 Chromosome CM068879.1 <> na Primary Assembly 18622573 na SUPER_15 assembled-molecule 15 Chromosome CM068880.1 <> na Primary Assembly 18344658 na SUPER_16 assembled-molecule 16 Chromosome CM068881.1 <> na Primary Assembly 17069795 na SUPER_17 assembled-molecule 17 Chromosome CM068882.1 <> na Primary Assembly 16467766 na SUPER_18 assembled-molecule 18 Chromosome CM068883.1 <> na Primary Assembly 16412338 na SUPER_19 assembled-molecule 19 Chromosome CM068884.1 <> na Primary Assembly 15759073 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JAXKVT010000021.1 <> na Primary Assembly 64824 na SUPER_2_unloc_2 unlocalized-scaffold 2 Chromosome JAXKVT010000025.1 <> na Primary Assembly 49477 na SUPER_2_unloc_1 unlocalized-scaffold 2 Chromosome JAXKVT010000029.1 <> na Primary Assembly 47003 na SUPER_2_unloc_3 unlocalized-scaffold 2 Chromosome JAXKVT010000031.1 <> na Primary Assembly 44953 na SUPER_2_unloc_4 unlocalized-scaffold 2 Chromosome JAXKVT010000050.1 <> na Primary Assembly 33071 na SUPER_2_unloc_5 unlocalized-scaffold 2 Chromosome JAXKVT010000051.1 <> na Primary Assembly 32811 na SUPER_2_unloc_6 unlocalized-scaffold 2 Chromosome JAXKVT010000057.1 <> na Primary Assembly 28588 na SUPER_8_unloc_1 unlocalized-scaffold 8 Chromosome JAXKVT010000024.1 <> na Primary Assembly 49637 na SUPER_14_unloc_1 unlocalized-scaffold 14 Chromosome JAXKVT010000046.1 <> na Primary Assembly 34533 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome JAXKVT010000020.1 <> na Primary Assembly 75954 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JAXKVT010000023.1 <> na Primary Assembly 52464 na Scaffold_177 unplaced-scaffold na na JAXKVT010000063.1 <> na Primary Assembly 24940 na Scaffold_39 unplaced-scaffold na na JAXKVT010000022.1 <> na Primary Assembly 53795 na Scaffold_40 unplaced-scaffold na na JAXKVT010000026.1 <> na Primary Assembly 48954 na Scaffold_41 unplaced-scaffold na na JAXKVT010000027.1 <> na Primary Assembly 47224 na Scaffold_42 unplaced-scaffold na na JAXKVT010000028.1 <> na Primary Assembly 47109 na Scaffold_43 unplaced-scaffold na na JAXKVT010000030.1 <> na Primary Assembly 46961 na Scaffold_44 unplaced-scaffold na na JAXKVT010000032.1 <> na Primary Assembly 44073 na Scaffold_45 unplaced-scaffold na na JAXKVT010000033.1 <> na Primary Assembly 43033 na Scaffold_46 unplaced-scaffold na na JAXKVT010000034.1 <> na Primary Assembly 42225 na Scaffold_47 unplaced-scaffold na na JAXKVT010000035.1 <> na Primary Assembly 40421 na Scaffold_48 unplaced-scaffold na na JAXKVT010000036.1 <> na Primary Assembly 39275 na Scaffold_49 unplaced-scaffold na na JAXKVT010000037.1 <> na Primary Assembly 38908 na Scaffold_50 unplaced-scaffold na na JAXKVT010000038.1 <> na Primary Assembly 37904 na Scaffold_51 unplaced-scaffold na na JAXKVT010000039.1 <> na Primary Assembly 37600 na Scaffold_52 unplaced-scaffold na na JAXKVT010000040.1 <> na Primary Assembly 36863 na Scaffold_53 unplaced-scaffold na na JAXKVT010000041.1 <> na Primary Assembly 36648 na Scaffold_54 unplaced-scaffold na na JAXKVT010000042.1 <> na Primary Assembly 36569 na Scaffold_55 unplaced-scaffold na na JAXKVT010000043.1 <> na Primary Assembly 35865 na Scaffold_56 unplaced-scaffold na na JAXKVT010000044.1 <> na Primary Assembly 35803 na Scaffold_57 unplaced-scaffold na na JAXKVT010000045.1 <> na Primary Assembly 35121 na Scaffold_58 unplaced-scaffold na na JAXKVT010000047.1 <> na Primary Assembly 34375 na Scaffold_59 unplaced-scaffold na na JAXKVT010000048.1 <> na Primary Assembly 33823 na Scaffold_60 unplaced-scaffold na na JAXKVT010000049.1 <> na Primary Assembly 33086 na Scaffold_61 unplaced-scaffold na na JAXKVT010000052.1 <> na Primary Assembly 32593 na Scaffold_62 unplaced-scaffold na na JAXKVT010000053.1 <> na Primary Assembly 29944 na Scaffold_63 unplaced-scaffold na na JAXKVT010000054.1 <> na Primary Assembly 29921 na Scaffold_64 unplaced-scaffold na na JAXKVT010000055.1 <> na Primary Assembly 29759 na Scaffold_65 unplaced-scaffold na na JAXKVT010000056.1 <> na Primary Assembly 28743 na Scaffold_66 unplaced-scaffold na na JAXKVT010000058.1 <> na Primary Assembly 28343 na Scaffold_67 unplaced-scaffold na na JAXKVT010000059.1 <> na Primary Assembly 27558 na Scaffold_68 unplaced-scaffold na na JAXKVT010000060.1 <> na Primary Assembly 26965 na Scaffold_69 unplaced-scaffold na na JAXKVT010000061.1 <> na Primary Assembly 26540 na Scaffold_70 unplaced-scaffold na na JAXKVT010000062.1 <> na Primary Assembly 25107 na Scaffold_71 unplaced-scaffold na na JAXKVT010000064.1 <> na Primary Assembly 24227 na Scaffold_72 unplaced-scaffold na na JAXKVT010000065.1 <> na Primary Assembly 22350 na