# Assembly name:  ASM3648588v1
# Organism name:  Trypanosoma cruzi (kinetoplastids)
# Infraspecific name:  strain=Dm25
# Taxid:          5693
# BioSample:      SAMN36439025
# BioProject:     PRJNA1039287
# Submitter:      Universidad de los Andes
# Date:           2024-02-09
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JAZAQX01
# Assembly method: HiFiasm and NGSEP v. 0.12/4.3.1
# Expected final version: no
# Genome coverage: 50x
# Sequencing technology: PacBio Sequel
# GenBank assembly accession: GCA_036485885.1
# Linked assembly: GCA_036485875.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_036485905.1		Primary Assembly
## GCA_036485915.1		non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
TcDm25_Chr01_H1	assembled-molecule	1	Chromosome	CM071648.1	<>	na	Primary Assembly	752486	na
TcDm25_Chr02_H1	assembled-molecule	2	Chromosome	CM071649.1	<>	na	Primary Assembly	2145383	na
TcDm25_Chr03_H1	assembled-molecule	3	Chromosome	CM071650.1	<>	na	Primary Assembly	1882095	na
TcDm25_Chr04_H1_c1	assembled-molecule	4	Chromosome	CM071651.1	<>	na	Primary Assembly	2824530	na
TcDm25_Chr05_H1	assembled-molecule	5	Chromosome	CM071652.1	<>	na	Primary Assembly	1362421	na
TcDm25_Chr06_H1	assembled-molecule	6	Chromosome	CM071653.1	<>	na	Primary Assembly	1647762	na
TcDm25_Chr07_H1	assembled-molecule	7	Chromosome	CM071654.1	<>	na	Primary Assembly	1458509	na
TcDm25_Chr08_H1	assembled-molecule	8	Chromosome	CM071655.1	<>	na	Primary Assembly	1228545	na
TcDm25_Chr09_H1	assembled-molecule	9	Chromosome	CM071656.1	<>	na	Primary Assembly	1349720	na
TcDm25_Chr10_H1	assembled-molecule	10	Chromosome	CM071657.1	<>	na	Primary Assembly	1139640	na
TcDm25_Chr11_H1_c1	assembled-molecule	11	Chromosome	CM071658.1	<>	na	Primary Assembly	1060642	na
TcDm25_Chr12_H1	assembled-molecule	12	Chromosome	CM071659.1	<>	na	Primary Assembly	1140931	na
TcDm25_Chr13_H1	assembled-molecule	13	Chromosome	CM071660.1	<>	na	Primary Assembly	811800	na
TcDm25_Chr14_H1	assembled-molecule	14	Chromosome	CM071661.1	<>	na	Primary Assembly	962143	na
TcDm25_Chr15_H1	assembled-molecule	15	Chromosome	CM071662.1	<>	na	Primary Assembly	944107	na
TcDm25_Chr16_H1_c1	assembled-molecule	16	Chromosome	CM071663.1	<>	na	Primary Assembly	1099580	na
TcDm25_Chr17_H1	assembled-molecule	17	Chromosome	CM071664.1	<>	na	Primary Assembly	1222364	na
TcDm25_Chr18_H1	assembled-molecule	18	Chromosome	CM071665.1	<>	na	Primary Assembly	1022790	na
TcDm25_Chr19_H1	assembled-molecule	19	Chromosome	CM071666.1	<>	na	Primary Assembly	967695	na
TcDm25_Chr20_H1	assembled-molecule	20	Chromosome	CM071667.1	<>	na	Primary Assembly	779959	na
TcDm25_Chr21_H1_c1	assembled-molecule	21	Chromosome	CM071668.1	<>	na	Primary Assembly	902719	na
TcDm25_Chr23_H1	assembled-molecule	23	Chromosome	CM071669.1	<>	na	Primary Assembly	637003	na
TcDm25_Chr24_H1_c1	assembled-molecule	24	Chromosome	CM071670.1	<>	na	Primary Assembly	893315	na
TcDm25_Chr25_H1	assembled-molecule	25	Chromosome	CM071671.1	<>	na	Primary Assembly	719266	na
TcDm25_Chr26_H1	assembled-molecule	26	Chromosome	CM071672.1	<>	na	Primary Assembly	769906	na
TcDm25_Chr27_H1	assembled-molecule	27	Chromosome	CM071673.1	<>	na	Primary Assembly	628314	na
TcDm25_Chr28_H1	assembled-molecule	28	Chromosome	CM071674.1	<>	na	Primary Assembly	594674	na
TcDm25_Chr29_H1	assembled-molecule	29	Chromosome	CM071675.1	<>	na	Primary Assembly	566767	na
TcDm25_Chr31_H1_c1	assembled-molecule	31	Chromosome	CM071676.1	<>	na	Primary Assembly	1639103	na
TcDm25_Chr32_H1	assembled-molecule	32	Chromosome	CM071677.1	<>	na	Primary Assembly	1869386	na
TcDm25_Chr22_H1_c1	unlocalized-scaffold	22	Chromosome	JAZAQX010000022.1	<>	na	Primary Assembly	625471	na
TcDm25_Chr22_H1_c2	unlocalized-scaffold	22	Chromosome	JAZAQX010000023.1	<>	na	Primary Assembly	274905	na
TcDm25_Chr30_H1_c1	unlocalized-scaffold	30	Chromosome	JAZAQX010000031.1	<>	na	Primary Assembly	2497974	na
TcDm25_Chr30_H1_c2	unlocalized-scaffold	30	Chromosome	JAZAQX010000032.1	<>	na	Primary Assembly	209098	na
TcDm25_Maxicircle_H1	unlocalized-scaffold	kinetoplast	Kinetoplast	JAZAQX010000035.1	<>	na	non-nuclear	47166	na