# Assembly name: mMicPen1.hap1 # Organism name: Microtus pennsylvanicus (meadow vole) # Isolate: mMicPen1 # Sex: male # Taxid: 10058 # BioSample: SAMN39894136 # BioProject: PRJNA1074849 # Submitter: Vertebrate Genomes Project # Date: 2024-03-06 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBANDQ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.3 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 40.8x # Sequencing technology: PacBio Sequel II HiFi; Arima Hi-C v2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_037038515.1 # Linked assembly: GCA_037039175.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_037038525.1 Primary Assembly ## GCA_037038535.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM073167.1 <> na Primary Assembly 223010037 na SUPER_2 assembled-molecule 2 Chromosome CM073168.1 <> na Primary Assembly 153581673 na SUPER_3 assembled-molecule 3 Chromosome CM073169.1 <> na Primary Assembly 145900345 na SUPER_4 assembled-molecule 4 Chromosome CM073170.1 <> na Primary Assembly 145655802 na SUPER_5 assembled-molecule 5 Chromosome CM073171.1 <> na Primary Assembly 139304956 na SUPER_6 assembled-molecule 6 Chromosome CM073172.1 <> na Primary Assembly 128925859 na SUPER_7 assembled-molecule 7 Chromosome CM073173.1 <> na Primary Assembly 125308425 na SUPER_8 assembled-molecule 8 Chromosome CM073174.1 <> na Primary Assembly 115596155 na SUPER_9 assembled-molecule 9 Chromosome CM073175.1 <> na Primary Assembly 113644876 na SUPER_10 assembled-molecule 10 Chromosome CM073176.1 <> na Primary Assembly 113485825 na SUPER_11 assembled-molecule 11 Chromosome CM073177.1 <> na Primary Assembly 104236089 na SUPER_12 assembled-molecule 12 Chromosome CM073178.1 <> na Primary Assembly 98930385 na SUPER_13 assembled-molecule 13 Chromosome CM073179.1 <> na Primary Assembly 83970011 na SUPER_14 assembled-molecule 14 Chromosome CM073180.1 <> na Primary Assembly 76399174 na SUPER_15 assembled-molecule 15 Chromosome CM073181.1 <> na Primary Assembly 73638801 na SUPER_16 assembled-molecule 16 Chromosome CM073182.1 <> na Primary Assembly 49858512 na SUPER_17 assembled-molecule 17 Chromosome CM073183.1 <> na Primary Assembly 46986437 na SUPER_18 assembled-molecule 18 Chromosome CM073184.1 <> na Primary Assembly 43494396 na SUPER_19 assembled-molecule 19 Chromosome CM073185.1 <> na Primary Assembly 41035956 na SUPER_20 assembled-molecule 20 Chromosome CM073186.1 <> na Primary Assembly 39339920 na SUPER_21 assembled-molecule 21 Chromosome CM073187.1 <> na Primary Assembly 37039253 na SUPER_22 assembled-molecule 22 Chromosome CM073188.1 <> na Primary Assembly 36746973 na SUPER_X assembled-molecule X Chromosome CM073189.1 <> na Primary Assembly 144501185 na SUPER_Y assembled-molecule Y Chromosome CM073190.1 <> na Primary Assembly 42434929 na SUPER_13_unloc_1 unlocalized-scaffold 13 Chromosome JBANDQ010000042.1 <> na Primary Assembly 219690 na SUPER_13_unloc_2 unlocalized-scaffold 13 Chromosome JBANDQ010000051.1 <> na Primary Assembly 161937 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome JBANDQ010000026.1 <> na Primary Assembly 10887723 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JBANDQ010000027.1 <> na Primary Assembly 6038661 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome JBANDQ010000028.1 <> na Primary Assembly 5950589 na SUPER_Y_unloc_4 unlocalized-scaffold Y Chromosome JBANDQ010000030.1 <> na Primary Assembly 1921118 na SUPER_Y_unloc_5 unlocalized-scaffold Y Chromosome JBANDQ010000036.1 <> na Primary Assembly 780818 na Scaffold_148 unplaced-scaffold na na JBANDQ010000029.1 <> na Primary Assembly 2871528 na Scaffold_47 unplaced-scaffold na na JBANDQ010000031.1 <> na Primary Assembly 1876469 na Scaffold_48 unplaced-scaffold na na JBANDQ010000032.1 <> na Primary Assembly 1712680 na Scaffold_112 unplaced-scaffold na na JBANDQ010000033.1 <> na Primary Assembly 1694790 na Scaffold_110 unplaced-scaffold na na JBANDQ010000034.1 <> na Primary Assembly 1037732 na Scaffold_109 unplaced-scaffold na na JBANDQ010000035.1 <> na Primary Assembly 998063 na Scaffold_108 unplaced-scaffold na na JBANDQ010000037.1 <> na Primary Assembly 752806 na Scaffold_49 unplaced-scaffold na na JBANDQ010000038.1 <> na Primary Assembly 453777 na Scaffold_50 unplaced-scaffold na na JBANDQ010000039.1 <> na Primary Assembly 327487 na Scaffold_51 unplaced-scaffold na na JBANDQ010000040.1 <> na Primary Assembly 298696 na Scaffold_52 unplaced-scaffold na na JBANDQ010000041.1 <> na Primary Assembly 252159 na Scaffold_53 unplaced-scaffold na na JBANDQ010000043.1 <> na Primary Assembly 210986 na Scaffold_54 unplaced-scaffold na na JBANDQ010000044.1 <> na Primary Assembly 207518 na Scaffold_55 unplaced-scaffold na na JBANDQ010000045.1 <> na Primary Assembly 200170 na Scaffold_56 unplaced-scaffold na na JBANDQ010000046.1 <> na Primary Assembly 188087 na Scaffold_57 unplaced-scaffold na na JBANDQ010000047.1 <> na Primary Assembly 182130 na Scaffold_58 unplaced-scaffold na na JBANDQ010000048.1 <> na Primary Assembly 176434 na Scaffold_59 unplaced-scaffold na na JBANDQ010000049.1 <> na Primary Assembly 166271 na Scaffold_60 unplaced-scaffold na na JBANDQ010000050.1 <> na Primary Assembly 162721 na Scaffold_61 unplaced-scaffold na na JBANDQ010000052.1 <> na Primary Assembly 159265 na Scaffold_62 unplaced-scaffold na na JBANDQ010000053.1 <> na Primary Assembly 154210 na Scaffold_63 unplaced-scaffold na na JBANDQ010000054.1 <> na Primary Assembly 146282 na Scaffold_65 unplaced-scaffold na na JBANDQ010000055.1 <> na Primary Assembly 138763 na Scaffold_64 unplaced-scaffold na na JBANDQ010000056.1 <> na Primary Assembly 138465 na Scaffold_66 unplaced-scaffold na na JBANDQ010000057.1 <> na Primary Assembly 137363 na Scaffold_67 unplaced-scaffold na na JBANDQ010000058.1 <> na Primary Assembly 136986 na Scaffold_68 unplaced-scaffold na na JBANDQ010000059.1 <> na Primary Assembly 135132 na Scaffold_69 unplaced-scaffold na na JBANDQ010000060.1 <> na Primary Assembly 132452 na Scaffold_71 unplaced-scaffold na na JBANDQ010000061.1 <> na Primary Assembly 128612 na Scaffold_70 unplaced-scaffold na na JBANDQ010000062.1 <> na Primary Assembly 121245 na Scaffold_240 unplaced-scaffold na na JBANDQ010000063.1 <> na Primary Assembly 102411 na Scaffold_72 unplaced-scaffold na na JBANDQ010000064.1 <> na Primary Assembly 99726 na Scaffold_73 unplaced-scaffold na na JBANDQ010000065.1 <> na Primary Assembly 92890 na Scaffold_243 unplaced-scaffold na na JBANDQ010000066.1 <> na Primary Assembly 88372 na Scaffold_74 unplaced-scaffold na na JBANDQ010000067.1 <> na Primary Assembly 88329 na Scaffold_75 unplaced-scaffold na na JBANDQ010000068.1 <> na Primary Assembly 86902 na Scaffold_246 unplaced-scaffold na na JBANDQ010000069.1 <> na Primary Assembly 79598 na Scaffold_76 unplaced-scaffold na na JBANDQ010000070.1 <> na Primary Assembly 74119 na Scaffold_248 unplaced-scaffold na na JBANDQ010000071.1 <> na Primary Assembly 71818 na Scaffold_77 unplaced-scaffold na na JBANDQ010000072.1 <> na Primary Assembly 69297 na Scaffold_250 unplaced-scaffold na na JBANDQ010000073.1 <> na Primary Assembly 63607 na Scaffold_78 unplaced-scaffold na na JBANDQ010000074.1 <> na Primary Assembly 63482 na Scaffold_252 unplaced-scaffold na na JBANDQ010000075.1 <> na Primary Assembly 62551 na Scaffold_79 unplaced-scaffold na na JBANDQ010000076.1 <> na Primary Assembly 62449 na Scaffold_254 unplaced-scaffold na na JBANDQ010000077.1 <> na Primary Assembly 61831 na Scaffold_80 unplaced-scaffold na na JBANDQ010000078.1 <> na Primary Assembly 61588 na Scaffold_256 unplaced-scaffold na na JBANDQ010000079.1 <> na Primary Assembly 59068 na Scaffold_257 unplaced-scaffold na na JBANDQ010000080.1 <> na Primary Assembly 56763 na Scaffold_81 unplaced-scaffold na na JBANDQ010000081.1 <> na Primary Assembly 54239 na Scaffold_259 unplaced-scaffold na na JBANDQ010000082.1 <> na Primary Assembly 53926 na Scaffold_82 unplaced-scaffold na na JBANDQ010000083.1 <> na Primary Assembly 53501 na Scaffold_261 unplaced-scaffold na na JBANDQ010000084.1 <> na Primary Assembly 52622 na Scaffold_262 unplaced-scaffold na na JBANDQ010000085.1 <> na Primary Assembly 51451 na Scaffold_83 unplaced-scaffold na na JBANDQ010000086.1 <> na Primary Assembly 51198 na Scaffold_264 unplaced-scaffold na na JBANDQ010000087.1 <> na Primary Assembly 50979 na Scaffold_265 unplaced-scaffold na na JBANDQ010000088.1 <> na Primary Assembly 50505 na Scaffold_84 unplaced-scaffold na na JBANDQ010000089.1 <> na Primary Assembly 49717 na Scaffold_267 unplaced-scaffold na na JBANDQ010000090.1 <> na Primary Assembly 49363 na Scaffold_268 unplaced-scaffold na na JBANDQ010000091.1 <> na Primary Assembly 48264 na Scaffold_86 unplaced-scaffold na na JBANDQ010000092.1 <> na Primary Assembly 47994 na Scaffold_270 unplaced-scaffold na na JBANDQ010000093.1 <> na Primary Assembly 47923 na Scaffold_87 unplaced-scaffold na na JBANDQ010000094.1 <> na Primary Assembly 47822 na Scaffold_272 unplaced-scaffold na na JBANDQ010000095.1 <> na Primary Assembly 47735 na Scaffold_273 unplaced-scaffold na na JBANDQ010000096.1 <> na Primary Assembly 47396 na Scaffold_88 unplaced-scaffold na na JBANDQ010000097.1 <> na Primary Assembly 46340 na Scaffold_275 unplaced-scaffold na na JBANDQ010000098.1 <> na Primary Assembly 45051 na Scaffold_276 unplaced-scaffold na na JBANDQ010000099.1 <> na Primary Assembly 45044 na Scaffold_89 unplaced-scaffold na na JBANDQ010000100.1 <> na Primary Assembly 43911 na Scaffold_278 unplaced-scaffold na na JBANDQ010000101.1 <> na Primary Assembly 42800 na Scaffold_279 unplaced-scaffold na na JBANDQ010000102.1 <> na Primary Assembly 42396 na Scaffold_280 unplaced-scaffold na na JBANDQ010000103.1 <> na Primary Assembly 42198 na Scaffold_281 unplaced-scaffold na na JBANDQ010000104.1 <> na Primary Assembly 41997 na Scaffold_90 unplaced-scaffold na na JBANDQ010000105.1 <> na Primary Assembly 41131 na Scaffold_283 unplaced-scaffold na na JBANDQ010000106.1 <> na Primary Assembly 41110 na Scaffold_91 unplaced-scaffold na na JBANDQ010000107.1 <> na Primary Assembly 40715 na Scaffold_285 unplaced-scaffold na na JBANDQ010000108.1 <> na Primary Assembly 40679 na Scaffold_286 unplaced-scaffold na na JBANDQ010000109.1 <> na Primary Assembly 40341 na Scaffold_287 unplaced-scaffold na na JBANDQ010000110.1 <> na Primary Assembly 39083 na Scaffold_92 unplaced-scaffold na na JBANDQ010000111.1 <> na Primary Assembly 39047 na Scaffold_289 unplaced-scaffold na na JBANDQ010000112.1 <> na Primary Assembly 38950 na Scaffold_290 unplaced-scaffold na na JBANDQ010000113.1 <> na Primary Assembly 38876 na Scaffold_93 unplaced-scaffold na na JBANDQ010000114.1 <> na Primary Assembly 38824 na Scaffold_292 unplaced-scaffold na na JBANDQ010000115.1 <> na Primary Assembly 38749 na Scaffold_293 unplaced-scaffold na na JBANDQ010000116.1 <> na Primary Assembly 38749 na Scaffold_294 unplaced-scaffold na na JBANDQ010000117.1 <> na Primary Assembly 38648 na Scaffold_94 unplaced-scaffold na na JBANDQ010000118.1 <> na Primary Assembly 38357 na Scaffold_296 unplaced-scaffold na na JBANDQ010000119.1 <> na Primary Assembly 38186 na Scaffold_297 unplaced-scaffold na na JBANDQ010000120.1 <> na Primary Assembly 38086 na Scaffold_95 unplaced-scaffold na na JBANDQ010000121.1 <> na Primary Assembly 38073 na Scaffold_299 unplaced-scaffold na na JBANDQ010000122.1 <> na Primary Assembly 37380 na Scaffold_300 unplaced-scaffold na na JBANDQ010000123.1 <> na Primary Assembly 36071 na Scaffold_301 unplaced-scaffold na na JBANDQ010000124.1 <> na Primary Assembly 35993 na Scaffold_96 unplaced-scaffold na na JBANDQ010000125.1 <> na Primary Assembly 35911 na Scaffold_303 unplaced-scaffold na na JBANDQ010000126.1 <> na Primary Assembly 35545 na Scaffold_304 unplaced-scaffold na na JBANDQ010000127.1 <> na Primary Assembly 35533 na Scaffold_305 unplaced-scaffold na na JBANDQ010000128.1 <> na Primary Assembly 35306 na Scaffold_306 unplaced-scaffold na na JBANDQ010000129.1 <> na Primary Assembly 34773 na Scaffold_97 unplaced-scaffold na na JBANDQ010000130.1 <> na Primary Assembly 34414 na Scaffold_308 unplaced-scaffold na na JBANDQ010000131.1 <> na Primary Assembly 34351 na Scaffold_309 unplaced-scaffold na na JBANDQ010000132.1 <> na Primary Assembly 34282 na Scaffold_98 unplaced-scaffold na na JBANDQ010000133.1 <> na Primary Assembly 34272 na Scaffold_311 unplaced-scaffold na na JBANDQ010000134.1 <> na Primary Assembly 34196 na Scaffold_99 unplaced-scaffold na na JBANDQ010000135.1 <> na Primary Assembly 34177 na Scaffold_313 unplaced-scaffold na na JBANDQ010000136.1 <> na Primary Assembly 33885 na Scaffold_314 unplaced-scaffold na na JBANDQ010000137.1 <> na Primary Assembly 33838 na Scaffold_315 unplaced-scaffold na na JBANDQ010000138.1 <> na Primary Assembly 32926 na Scaffold_316 unplaced-scaffold na na JBANDQ010000139.1 <> na Primary Assembly 32792 na Scaffold_317 unplaced-scaffold na na JBANDQ010000140.1 <> na Primary Assembly 32617 na Scaffold_100 unplaced-scaffold na na JBANDQ010000141.1 <> na Primary Assembly 32596 na Scaffold_319 unplaced-scaffold na na JBANDQ010000142.1 <> na Primary Assembly 32075 na Scaffold_320 unplaced-scaffold na na JBANDQ010000143.1 <> na Primary Assembly 31270 na Scaffold_321 unplaced-scaffold na na JBANDQ010000144.1 <> na Primary Assembly 30668 na Scaffold_322 unplaced-scaffold na na JBANDQ010000145.1 <> na Primary Assembly 30550 na Scaffold_101 unplaced-scaffold na na JBANDQ010000146.1 <> na Primary Assembly 30513 na Scaffold_324 unplaced-scaffold na na JBANDQ010000147.1 <> na Primary Assembly 29467 na Scaffold_325 unplaced-scaffold na na JBANDQ010000148.1 <> na Primary Assembly 29368 na Scaffold_326 unplaced-scaffold na na JBANDQ010000149.1 <> na Primary Assembly 29065 na Scaffold_102 unplaced-scaffold na na JBANDQ010000150.1 <> na Primary Assembly 28897 na Scaffold_328 unplaced-scaffold na na JBANDQ010000151.1 <> na Primary Assembly 28888 na Scaffold_329 unplaced-scaffold na na JBANDQ010000152.1 <> na Primary Assembly 28799 na Scaffold_330 unplaced-scaffold na na JBANDQ010000153.1 <> na Primary Assembly 28238 na Scaffold_331 unplaced-scaffold na na JBANDQ010000154.1 <> na Primary Assembly 27153 na Scaffold_103 unplaced-scaffold na na JBANDQ010000155.1 <> na Primary Assembly 26706 na Scaffold_333 unplaced-scaffold na na JBANDQ010000156.1 <> na Primary Assembly 26533 na Scaffold_334 unplaced-scaffold na na JBANDQ010000157.1 <> na Primary Assembly 25680 na Scaffold_335 unplaced-scaffold na na JBANDQ010000158.1 <> na Primary Assembly 25126 na Scaffold_336 unplaced-scaffold na na JBANDQ010000159.1 <> na Primary Assembly 24428 na Scaffold_337 unplaced-scaffold na na JBANDQ010000160.1 <> na Primary Assembly 24112 na Scaffold_104 unplaced-scaffold na na JBANDQ010000161.1 <> na Primary Assembly 24060 na Scaffold_339 unplaced-scaffold na na JBANDQ010000162.1 <> na Primary Assembly 24006 na Scaffold_340 unplaced-scaffold na na JBANDQ010000163.1 <> na Primary Assembly 23787 na Scaffold_341 unplaced-scaffold na na JBANDQ010000164.1 <> na Primary Assembly 23666 na Scaffold_342 unplaced-scaffold na na JBANDQ010000165.1 <> na Primary Assembly 23342 na Scaffold_105 unplaced-scaffold na na JBANDQ010000166.1 <> na Primary Assembly 23195 na Scaffold_344 unplaced-scaffold na na JBANDQ010000167.1 <> na Primary Assembly 23153 na Scaffold_345 unplaced-scaffold na na JBANDQ010000168.1 <> na Primary Assembly 22754 na Scaffold_346 unplaced-scaffold na na JBANDQ010000169.1 <> na Primary Assembly 22565 na Scaffold_347 unplaced-scaffold na na JBANDQ010000170.1 <> na Primary Assembly 22232 na Scaffold_348 unplaced-scaffold na na JBANDQ010000171.1 <> na Primary Assembly 22117 na Scaffold_349 unplaced-scaffold na na JBANDQ010000172.1 <> na Primary Assembly 20785 na Scaffold_106 unplaced-scaffold na na JBANDQ010000173.1 <> na Primary Assembly 20699 na Scaffold_351 unplaced-scaffold na na JBANDQ010000174.1 <> na Primary Assembly 20238 na Scaffold_352 unplaced-scaffold na na JBANDQ010000175.1 <> na Primary Assembly 20209 na Scaffold_353 unplaced-scaffold na na JBANDQ010000176.1 <> na Primary Assembly 19170 na Scaffold_354 unplaced-scaffold na na JBANDQ010000177.1 <> na Primary Assembly 17812 na Scaffold_355 unplaced-scaffold na na JBANDQ010000178.1 <> na Primary Assembly 17665 na Scaffold_356 unplaced-scaffold na na JBANDQ010000179.1 <> na Primary Assembly 16456 na Scaffold_107 unplaced-scaffold na na JBANDQ010000180.1 <> na Primary Assembly 15845 na Scaffold_358 unplaced-scaffold na na JBANDQ010000181.1 <> na Primary Assembly 14952 na ptg000006c_rc_rotated assembled-molecule MT Mitochondrion CM073192.1 <> na non-nuclear 16323 na