# Assembly name: rSisCat1_p1.0 # Organism name: Sistrurus catenatus (massasauga) # Isolate: EasternMassasaugaR01 # Taxid: 8756 # BioSample: SAMN36900204 # BioProject: PRJNA1073551 # Submitter: Canada's national platform for genome sequencing and analysis # Date: 2024-05-29 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBAIFV01 # Assembly method: hifiasm pacbio+hic mode v. 0.19.4; purge_dups v. 1.2.5; yahs v. 1.2 # Expected final version: yes # Genome coverage: 30.97x # Sequencing technology: PacBio Sequel II; Illumina NovaSeq 6000 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_039880765.1 # Linked assembly: GCA_039880715.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_039880835.1 Primary Assembly ## GCA_039880855.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM078115.1 <> na Primary Assembly 343906952 na SUPER_2 assembled-molecule 2 Chromosome CM078116.1 <> na Primary Assembly 268612793 na SUPER_3 assembled-molecule 3 Chromosome CM078117.1 <> na Primary Assembly 200181838 na SUPER_4 assembled-molecule 4 Chromosome CM078118.1 <> na Primary Assembly 119687384 na SUPER_6 assembled-molecule 5 Chromosome CM078119.1 <> na Primary Assembly 98816494 na SUPER_7 assembled-molecule 6 Chromosome CM078120.1 <> na Primary Assembly 90610798 na SUPER_8 assembled-molecule 7 Chromosome CM078121.1 <> na Primary Assembly 78702688 na SUPER_11 assembled-molecule 8 Chromosome CM078122.1 <> na Primary Assembly 20335542 na SUPER_10 assembled-molecule 9 Chromosome CM078123.1 <> na Primary Assembly 25612775 na SUPER_12 assembled-molecule 10 Chromosome CM078124.1 <> na Primary Assembly 18242847 na SUPER_15 assembled-molecule 11 Chromosome CM078125.1 <> na Primary Assembly 15695218 na SUPER_13 assembled-molecule 12 Chromosome CM078126.1 <> na Primary Assembly 17969886 na SUPER_14 assembled-molecule 13 Chromosome CM078127.1 <> na Primary Assembly 16741566 na SUPER_17 assembled-molecule 14 Chromosome CM078128.1 <> na Primary Assembly 11100386 na SUPER_18 assembled-molecule 15 Chromosome CM078129.1 <> na Primary Assembly 9144170 na SUPER_19 assembled-molecule 16 Chromosome CM078130.1 <> na Primary Assembly 8825716 na SUPER_20 assembled-molecule 17 Chromosome CM078131.1 <> na Primary Assembly 6960488 na SUPER_5 assembled-molecule Z Chromosome CM078132.1 <> na Primary Assembly 116247423 na SUPER_9 unplaced-scaffold na na JBAIFV010000009.1 <> na Primary Assembly 60310351 na SUPER_16 unplaced-scaffold na na JBAIFV010000016.1 <> na Primary Assembly 15230396 na SUPER_21 unplaced-scaffold na na JBAIFV010000021.1 <> na Primary Assembly 4759436 na Scaffold_41 unplaced-scaffold na na JBAIFV010000022.1 <> na Primary Assembly 931748 na Scaffold_42 unplaced-scaffold na na JBAIFV010000023.1 <> na Primary Assembly 627450 na Scaffold_61 unplaced-scaffold na na JBAIFV010000024.1 <> na Primary Assembly 476886 na Scaffold_43 unplaced-scaffold na na JBAIFV010000025.1 <> na Primary Assembly 361616 na Scaffold_64 unplaced-scaffold na na JBAIFV010000026.1 <> na Primary Assembly 293899 na Scaffold_53 unplaced-scaffold na na JBAIFV010000027.1 <> na Primary Assembly 267583 na Scaffold_66 unplaced-scaffold na na JBAIFV010000028.1 <> na Primary Assembly 248749 na Scaffold_69 unplaced-scaffold na na JBAIFV010000029.1 <> na Primary Assembly 236160 na Scaffold_50 unplaced-scaffold na na JBAIFV010000030.1 <> na Primary Assembly 227679 na Scaffold_45 unplaced-scaffold na na JBAIFV010000031.1 <> na Primary Assembly 219429 na Scaffold_72 unplaced-scaffold na na JBAIFV010000032.1 <> na Primary Assembly 208237 na Scaffold_74 unplaced-scaffold na na JBAIFV010000033.1 <> na Primary Assembly 201529 na Scaffold_47 unplaced-scaffold na na JBAIFV010000034.1 <> na Primary Assembly 185575 na Scaffold_77 unplaced-scaffold na na JBAIFV010000035.1 <> na Primary Assembly 169844 na Scaffold_46 unplaced-scaffold na na JBAIFV010000036.1 <> na Primary Assembly 168037 na Scaffold_79 unplaced-scaffold na na JBAIFV010000037.1 <> na Primary Assembly 166184 na Scaffold_82 unplaced-scaffold na na JBAIFV010000038.1 <> na Primary Assembly 159892 na Scaffold_84 unplaced-scaffold na na JBAIFV010000039.1 <> na Primary Assembly 158072 na Scaffold_85 unplaced-scaffold na na JBAIFV010000040.1 <> na Primary Assembly 153642 na Scaffold_87 unplaced-scaffold na na JBAIFV010000041.1 <> na Primary Assembly 150284 na Scaffold_89 unplaced-scaffold na na JBAIFV010000042.1 <> na Primary Assembly 146419 na Scaffold_93 unplaced-scaffold na na JBAIFV010000043.1 <> na Primary Assembly 134316 na Scaffold_95 unplaced-scaffold na na JBAIFV010000044.1 <> na Primary Assembly 131045 na Scaffold_97 unplaced-scaffold na na JBAIFV010000045.1 <> na Primary Assembly 126001 na Scaffold_98 unplaced-scaffold na na JBAIFV010000046.1 <> na Primary Assembly 124730 na Scaffold_103 unplaced-scaffold na na JBAIFV010000047.1 <> na Primary Assembly 118678 na Scaffold_104 unplaced-scaffold na na JBAIFV010000048.1 <> na Primary Assembly 115648 na Scaffold_107 unplaced-scaffold na na JBAIFV010000049.1 <> na Primary Assembly 106003 na Scaffold_108 unplaced-scaffold na na JBAIFV010000050.1 <> na Primary Assembly 101890 na Scaffold_109 unplaced-scaffold na na JBAIFV010000051.1 <> na Primary Assembly 100398 na Scaffold_110 unplaced-scaffold na na JBAIFV010000052.1 <> na Primary Assembly 99473 na Scaffold_113 unplaced-scaffold na na JBAIFV010000053.1 <> na Primary Assembly 93391 na Scaffold_117 unplaced-scaffold na na JBAIFV010000054.1 <> na Primary Assembly 91063 na Scaffold_118 unplaced-scaffold na na JBAIFV010000055.1 <> na Primary Assembly 90314 na Scaffold_120 unplaced-scaffold na na JBAIFV010000056.1 <> na Primary Assembly 88502 na Scaffold_127 unplaced-scaffold na na JBAIFV010000057.1 <> na Primary Assembly 84669 na Scaffold_130 unplaced-scaffold na na JBAIFV010000058.1 <> na Primary Assembly 83727 na Scaffold_131 unplaced-scaffold na na JBAIFV010000059.1 <> na Primary Assembly 83606 na Scaffold_138 unplaced-scaffold na na JBAIFV010000060.1 <> na Primary Assembly 78881 na Scaffold_141 unplaced-scaffold na na JBAIFV010000061.1 <> na Primary Assembly 75315 na Scaffold_142 unplaced-scaffold na na JBAIFV010000062.1 <> na Primary Assembly 73704 na Scaffold_143 unplaced-scaffold na na JBAIFV010000063.1 <> na Primary Assembly 73671 na Scaffold_144 unplaced-scaffold na na JBAIFV010000064.1 <> na Primary Assembly 73000 na Scaffold_147 unplaced-scaffold na na JBAIFV010000065.1 <> na Primary Assembly 71031 na Scaffold_148 unplaced-scaffold na na JBAIFV010000066.1 <> na Primary Assembly 70614 na Scaffold_149 unplaced-scaffold na na JBAIFV010000067.1 <> na Primary Assembly 69919 na Scaffold_152 unplaced-scaffold na na JBAIFV010000068.1 <> na Primary Assembly 68808 na Scaffold_153 unplaced-scaffold na na JBAIFV010000069.1 <> na Primary Assembly 68485 na Scaffold_154 unplaced-scaffold na na JBAIFV010000070.1 <> na Primary Assembly 67884 na Scaffold_155 unplaced-scaffold na na JBAIFV010000071.1 <> na Primary Assembly 67263 na Scaffold_156 unplaced-scaffold na na JBAIFV010000072.1 <> na Primary Assembly 67180 na Scaffold_157 unplaced-scaffold na na JBAIFV010000073.1 <> na Primary Assembly 65916 na Scaffold_158 unplaced-scaffold na na JBAIFV010000074.1 <> na Primary Assembly 65771 na Scaffold_160 unplaced-scaffold na na JBAIFV010000075.1 <> na Primary Assembly 64664 na Scaffold_161 unplaced-scaffold na na JBAIFV010000076.1 <> na Primary Assembly 63198 na Scaffold_162 unplaced-scaffold na na JBAIFV010000077.1 <> na Primary Assembly 62887 na Scaffold_166 unplaced-scaffold na na JBAIFV010000078.1 <> na Primary Assembly 60598 na Scaffold_168 unplaced-scaffold na na JBAIFV010000079.1 <> na Primary Assembly 59854 na Scaffold_169 unplaced-scaffold na na JBAIFV010000080.1 <> na Primary Assembly 59514 na Scaffold_170 unplaced-scaffold na na JBAIFV010000081.1 <> na Primary Assembly 59388 na Scaffold_175 unplaced-scaffold na na JBAIFV010000082.1 <> na Primary Assembly 57457 na Scaffold_176 unplaced-scaffold na na JBAIFV010000083.1 <> na Primary Assembly 56754 na Scaffold_180 unplaced-scaffold na na JBAIFV010000084.1 <> na Primary Assembly 54133 na Scaffold_185 unplaced-scaffold na na JBAIFV010000085.1 <> na Primary Assembly 52858 na Scaffold_186 unplaced-scaffold na na JBAIFV010000086.1 <> na Primary Assembly 52333 na Scaffold_187 unplaced-scaffold na na JBAIFV010000087.1 <> na Primary Assembly 51891 na Scaffold_189 unplaced-scaffold na na JBAIFV010000088.1 <> na Primary Assembly 51640 na Scaffold_190 unplaced-scaffold na na JBAIFV010000089.1 <> na Primary Assembly 51350 na Scaffold_191 unplaced-scaffold na na JBAIFV010000090.1 <> na Primary Assembly 50990 na Scaffold_193 unplaced-scaffold na na JBAIFV010000091.1 <> na Primary Assembly 49178 na Scaffold_196 unplaced-scaffold na na JBAIFV010000092.1 <> na Primary Assembly 48232 na Scaffold_201 unplaced-scaffold na na JBAIFV010000093.1 <> na Primary Assembly 45564 na Scaffold_205 unplaced-scaffold na na JBAIFV010000094.1 <> na Primary Assembly 43389 na Scaffold_206 unplaced-scaffold na na JBAIFV010000095.1 <> na Primary Assembly 43036 na Scaffold_207 unplaced-scaffold na na JBAIFV010000096.1 <> na Primary Assembly 42873 na Scaffold_208 unplaced-scaffold na na JBAIFV010000097.1 <> na Primary Assembly 42849 na Scaffold_210 unplaced-scaffold na na JBAIFV010000098.1 <> na Primary Assembly 42715 na Scaffold_213 unplaced-scaffold na na JBAIFV010000099.1 <> na Primary Assembly 41314 na Scaffold_214 unplaced-scaffold na na JBAIFV010000100.1 <> na Primary Assembly 41275 na Scaffold_215 unplaced-scaffold na na JBAIFV010000101.1 <> na Primary Assembly 41187 na Scaffold_216 unplaced-scaffold na na JBAIFV010000102.1 <> na Primary Assembly 39790 na Scaffold_218 unplaced-scaffold na na JBAIFV010000103.1 <> na Primary Assembly 39571 na Scaffold_219 unplaced-scaffold na na JBAIFV010000104.1 <> na Primary Assembly 39563 na Scaffold_221 unplaced-scaffold na na JBAIFV010000105.1 <> na Primary Assembly 39229 na Scaffold_222 unplaced-scaffold na na JBAIFV010000106.1 <> na Primary Assembly 39043 na Scaffold_424 unplaced-scaffold na na JBAIFV010000107.1 <> na Primary Assembly 39035 na Scaffold_223 unplaced-scaffold na na JBAIFV010000108.1 <> na Primary Assembly 38712 na Scaffold_226 unplaced-scaffold na na JBAIFV010000109.1 <> na Primary Assembly 38343 na Scaffold_227 unplaced-scaffold na na JBAIFV010000110.1 <> na Primary Assembly 38054 na Scaffold_428 unplaced-scaffold na na JBAIFV010000111.1 <> na Primary Assembly 38004 na Scaffold_228 unplaced-scaffold na na JBAIFV010000112.1 <> na Primary Assembly 38004 na Scaffold_229 unplaced-scaffold na na JBAIFV010000113.1 <> na Primary Assembly 37990 na Scaffold_231 unplaced-scaffold na na JBAIFV010000114.1 <> na Primary Assembly 37767 na Scaffold_232 unplaced-scaffold na na JBAIFV010000115.1 <> na Primary Assembly 37756 na Scaffold_234 unplaced-scaffold na na JBAIFV010000116.1 <> na Primary Assembly 36912 na Scaffold_235 unplaced-scaffold na na JBAIFV010000117.1 <> na Primary Assembly 36685 na Scaffold_237 unplaced-scaffold na na JBAIFV010000118.1 <> na Primary Assembly 36626 na Scaffold_436 unplaced-scaffold na na JBAIFV010000119.1 <> na Primary Assembly 36025 na Scaffold_238 unplaced-scaffold na na JBAIFV010000120.1 <> na Primary Assembly 35852 na Scaffold_239 unplaced-scaffold na na JBAIFV010000121.1 <> na Primary Assembly 35635 na Scaffold_240 unplaced-scaffold na na JBAIFV010000122.1 <> na Primary Assembly 35463 na Scaffold_245 unplaced-scaffold na na JBAIFV010000123.1 <> na Primary Assembly 34713 na Scaffold_247 unplaced-scaffold na na JBAIFV010000124.1 <> na Primary Assembly 34294 na Scaffold_443 unplaced-scaffold na na JBAIFV010000125.1 <> na Primary Assembly 33794 na Scaffold_255 unplaced-scaffold na na JBAIFV010000126.1 <> na Primary Assembly 32721 na Scaffold_445 unplaced-scaffold na na JBAIFV010000127.1 <> na Primary Assembly 32706 na Scaffold_446 unplaced-scaffold na na JBAIFV010000128.1 <> na Primary Assembly 32060 na Scaffold_259 unplaced-scaffold na na JBAIFV010000129.1 <> na Primary Assembly 31936 na Scaffold_261 unplaced-scaffold na na JBAIFV010000130.1 <> na Primary Assembly 31333 na Scaffold_449 unplaced-scaffold na na JBAIFV010000131.1 <> na Primary Assembly 30621 na Scaffold_263 unplaced-scaffold na na JBAIFV010000132.1 <> na Primary Assembly 30518 na Scaffold_264 unplaced-scaffold na na JBAIFV010000133.1 <> na Primary Assembly 30335 na Scaffold_452 unplaced-scaffold na na JBAIFV010000134.1 <> na Primary Assembly 30262 na Scaffold_265 unplaced-scaffold na na JBAIFV010000135.1 <> na Primary Assembly 30065 na Scaffold_266 unplaced-scaffold na na JBAIFV010000136.1 <> na Primary Assembly 30061 na Scaffold_455 unplaced-scaffold na na JBAIFV010000137.1 <> na Primary Assembly 29619 na Scaffold_267 unplaced-scaffold na na JBAIFV010000138.1 <> na Primary Assembly 29441 na Scaffold_268 unplaced-scaffold na na JBAIFV010000139.1 <> na Primary Assembly 29430 na Scaffold_458 unplaced-scaffold na na JBAIFV010000140.1 <> na Primary Assembly 29258 na Scaffold_459 unplaced-scaffold na na JBAIFV010000141.1 <> na Primary Assembly 28686 na Scaffold_271 unplaced-scaffold na na JBAIFV010000142.1 <> na Primary Assembly 28654 na Scaffold_461 unplaced-scaffold na na JBAIFV010000143.1 <> na Primary Assembly 26929 na Scaffold_276 unplaced-scaffold na na JBAIFV010000144.1 <> na Primary Assembly 26497 na Scaffold_463 unplaced-scaffold na na JBAIFV010000145.1 <> na Primary Assembly 26456 na Scaffold_279 unplaced-scaffold na na JBAIFV010000146.1 <> na Primary Assembly 25540 na Scaffold_280 unplaced-scaffold na na JBAIFV010000147.1 <> na Primary Assembly 25474 na Scaffold_466 unplaced-scaffold na na JBAIFV010000148.1 <> na Primary Assembly 25446 na Scaffold_467 unplaced-scaffold na na JBAIFV010000149.1 <> na Primary Assembly 24565 na Scaffold_468 unplaced-scaffold na na JBAIFV010000150.1 <> na Primary Assembly 24274 na Scaffold_284 unplaced-scaffold na na JBAIFV010000151.1 <> na Primary Assembly 23782 na Scaffold_470 unplaced-scaffold na na JBAIFV010000152.1 <> na Primary Assembly 23279 na Scaffold_285 unplaced-scaffold na na JBAIFV010000153.1 <> na Primary Assembly 23038 na Scaffold_472 unplaced-scaffold na na JBAIFV010000154.1 <> na Primary Assembly 22951 na Scaffold_287 unplaced-scaffold na na JBAIFV010000155.1 <> na Primary Assembly 22620 na Scaffold_474 unplaced-scaffold na na JBAIFV010000156.1 <> na Primary Assembly 22394 na Scaffold_289 unplaced-scaffold na na JBAIFV010000157.1 <> na Primary Assembly 22068 na Scaffold_290 unplaced-scaffold na na JBAIFV010000158.1 <> na Primary Assembly 21978 na Scaffold_477 unplaced-scaffold na na JBAIFV010000159.1 <> na Primary Assembly 21808 na Scaffold_478 unplaced-scaffold na na JBAIFV010000160.1 <> na Primary Assembly 21117 na Scaffold_292 unplaced-scaffold na na JBAIFV010000161.1 <> na Primary Assembly 20978 na Scaffold_480 unplaced-scaffold na na JBAIFV010000162.1 <> na Primary Assembly 20682 na Scaffold_294 unplaced-scaffold na na JBAIFV010000163.1 <> na Primary Assembly 19888 na Scaffold_295 unplaced-scaffold na na JBAIFV010000164.1 <> na Primary Assembly 19257 na Scaffold_296 unplaced-scaffold na na JBAIFV010000165.1 <> na Primary Assembly 19196 na Scaffold_484 unplaced-scaffold na na JBAIFV010000166.1 <> na Primary Assembly 19172 na Scaffold_485 unplaced-scaffold na na JBAIFV010000167.1 <> na Primary Assembly 19147 na Scaffold_487 unplaced-scaffold na na JBAIFV010000168.1 <> na Primary Assembly 17713 na Scaffold_488 unplaced-scaffold na na JBAIFV010000169.1 <> na Primary Assembly 17193 na Scaffold_301 unplaced-scaffold na na JBAIFV010000170.1 <> na Primary Assembly 16904 na Scaffold_490 unplaced-scaffold na na JBAIFV010000171.1 <> na Primary Assembly 16821 na Scaffold_302 unplaced-scaffold na na JBAIFV010000172.1 <> na Primary Assembly 16635 na Scaffold_492 unplaced-scaffold na na JBAIFV010000173.1 <> na Primary Assembly 15164 na Scaffold_304 unplaced-scaffold na na JBAIFV010000174.1 <> na Primary Assembly 14947 na Scaffold_494 unplaced-scaffold na na JBAIFV010000175.1 <> na Primary Assembly 14927 na Scaffold_495 unplaced-scaffold na na JBAIFV010000176.1 <> na Primary Assembly 13852 na Scaffold_496 unplaced-scaffold na na JBAIFV010000177.1 <> na Primary Assembly 13599 na Scaffold_306 unplaced-scaffold na na JBAIFV010000178.1 <> na Primary Assembly 13325 na ptg000002l_rc_rotated assembled-molecule MT Mitochondrion CM078157.1 <> na non-nuclear 17245 na