# Assembly name: PvMHC087 # Organism name: Plasmodium vivax (malaria parasite P. vivax) # Isolate: MHC087 # Taxid: 5855 # BioSample: SAMN40996316 # BioProject: PRJNA1101536 # Submitter: New York University # Date: 2024-06-12 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JBDKXN01 # Assembly method: Canu v. 2.2 # Expected final version: no # Reference guided assembly: Plasmodium vivax W1 # Genome coverage: 14.0x # Sequencing technology: Oxford Nanopore GridION; Illumina # GenBank assembly accession: GCA_040114635.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040114645.1 Primary Assembly ## GCA_040114675.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name PvMHC-087_010000001_Scaffold unplaced-scaffold na na JBDKXN010000001.1 <> na Primary Assembly 47470 na PvMHC-087_010000003_Scaffold unplaced-scaffold na na JBDKXN010000002.1 <> na Primary Assembly 3620395 na PvMHC-087_010000004_Scaffold unplaced-scaffold na na JBDKXN010000003.1 <> na Primary Assembly 3620848 na PvMHC-087_010000005_Scaffold unplaced-scaffold na na JBDKXN010000004.1 <> na Primary Assembly 2204123 na PvMHC-087_010000006_Scaffold unplaced-scaffold na na JBDKXN010000005.1 <> na Primary Assembly 2159507 na PvMHC-087_010000007_Scaffold unplaced-scaffold na na JBDKXN010000006.1 <> na Primary Assembly 2131709 na PvMHC-087_010000008_Scaffold unplaced-scaffold na na JBDKXN010000007.1 <> na Primary Assembly 2106091 na PvMHC-087_010000009_Scaffold unplaced-scaffold na na JBDKXN010000008.1 <> na Primary Assembly 1714614 na PvMHC-087_010000010_Scaffold unplaced-scaffold na na JBDKXN010000009.1 <> na Primary Assembly 1544835 na PvMHC-087_010000011_Scaffold unplaced-scaffold na na JBDKXN010000010.1 <> na Primary Assembly 1648876 na PvMHC-087_010000012_Scaffold unplaced-scaffold na na JBDKXN010000011.1 <> na Primary Assembly 1128711 na PvMHC-087_010000013_Scaffold unplaced-scaffold na na JBDKXN010000012.1 <> na Primary Assembly 1254222 na PvMHC-087_010000014_Scaffold unplaced-scaffold na na JBDKXN010000013.1 <> na Primary Assembly 1140156 na PvMHC-087_010000015_Scaffold unplaced-scaffold na na JBDKXN010000014.1 <> na Primary Assembly 1094975 na PvMHC-087_010000016_Scaffold unplaced-scaffold na na JBDKXN010000015.1 <> na Primary Assembly 936132 na PvMHC-087_010000017_Scaffold unplaced-scaffold na na JBDKXN010000016.1 <> na Primary Assembly 351737 na PvMHC-087_010000018_Scaffold unplaced-scaffold na na JBDKXN010000017.1 <> na Primary Assembly 208955 na PvMHC-087_010000019_Scaffold unplaced-scaffold na na JBDKXN010000018.1 <> na Primary Assembly 74729 na PvMHC-087_00000018_Contig unplaced-scaffold na na JBDKXN010000019.1 <> na Primary Assembly 18107 na PvMHC-087_00000032_Contig unplaced-scaffold na na JBDKXN010000020.1 <> na Primary Assembly 15919 na PvMHC-087_00000055_Contig unplaced-scaffold na na JBDKXN010000021.1 <> na Primary Assembly 31263 na PvMHC-087_00000066_Contig unplaced-scaffold na na JBDKXN010000022.1 <> na Primary Assembly 49868 na PvMHC-087_00000067_Contig unplaced-scaffold na na JBDKXN010000023.1 <> na Primary Assembly 44088 na PvMHC-087_00000076_Contig unplaced-scaffold na na JBDKXN010000024.1 <> na Primary Assembly 20878 na PvMHC-087_00000081_Contig unplaced-scaffold na na JBDKXN010000025.1 <> na Primary Assembly 27033 na PvMHC-087_00000084_Contig unplaced-scaffold na na JBDKXN010000026.1 <> na Primary Assembly 18630 na PvMHC-087_00000085_Contig unplaced-scaffold na na JBDKXN010000027.1 <> na Primary Assembly 25478 na PvMHC-087_00000086_Contig unplaced-scaffold na na JBDKXN010000028.1 <> na Primary Assembly 9457 na PvMHC-087_00000098_Contig unplaced-scaffold na na JBDKXN010000029.1 <> na Primary Assembly 16287 na PvMHC-087_00000107_Contig unplaced-scaffold na na JBDKXN010000030.1 <> na Primary Assembly 28738 na PvMHC-087_00000109_Contig unplaced-scaffold na na JBDKXN010000031.1 <> na Primary Assembly 15594 na PvMHC-087_00000116_Contig unplaced-scaffold na na JBDKXN010000032.1 <> na Primary Assembly 26466 na PvMHC-087_00000118_Contig unplaced-scaffold na na JBDKXN010000033.1 <> na Primary Assembly 16879 na PvMHC-087_00000119_Contig unplaced-scaffold na na JBDKXN010000034.1 <> na Primary Assembly 32621 na PvMHC-087_00000128_Contig unplaced-scaffold na na JBDKXN010000035.1 <> na Primary Assembly 23302 na PvMHC-087_00000129_Contig unplaced-scaffold na na JBDKXN010000036.1 <> na Primary Assembly 10284 na PvMHC-087_00000131_Contig unplaced-scaffold na na JBDKXN010000037.1 <> na Primary Assembly 10958 na PvMHC-087_00000132_Contig unplaced-scaffold na na JBDKXN010000038.1 <> na Primary Assembly 22485 na PvMHC-087_00000139_Contig unplaced-scaffold na na JBDKXN010000039.1 <> na Primary Assembly 32436 na PvMHC-087_00000146_Contig unplaced-scaffold na na JBDKXN010000040.1 <> na Primary Assembly 16487 na PvMHC-087_00000176_Contig unplaced-scaffold na na JBDKXN010000041.1 <> na Primary Assembly 14780 na PvMHC-087_00000199_Contig unplaced-scaffold na na JBDKXN010000042.1 <> na Primary Assembly 27903 na PvMHC-087_00000200_Contig unplaced-scaffold na na JBDKXN010000043.1 <> na Primary Assembly 26980 na PvMHC-087_00000214_Contig unplaced-scaffold na na JBDKXN010000044.1 <> na Primary Assembly 30395 na PvMHC-087_00000224_Contig unplaced-scaffold na na JBDKXN010000045.1 <> na Primary Assembly 18432 na PvMHC-087_00000226_Contig unplaced-scaffold na na JBDKXN010000046.1 <> na Primary Assembly 13982 na PvMHC-087_00000233_Contig unplaced-scaffold na na JBDKXN010000047.1 <> na Primary Assembly 14563 na PvMHC-087_00000236_Contig unplaced-scaffold na na JBDKXN010000048.1 <> na Primary Assembly 22554 na PvMHC-087_00000239_Contig unplaced-scaffold na na JBDKXN010000049.1 <> na Primary Assembly 21890 na PvMHC-087_00000241_Contig unplaced-scaffold na na JBDKXN010000050.1 <> na Primary Assembly 21153 na PvMHC-087_00000244_Contig unplaced-scaffold na na JBDKXN010000051.1 <> na Primary Assembly 21653 na PvMHC-087_00000246_Contig unplaced-scaffold na na JBDKXN010000052.1 <> na Primary Assembly 10433 na PvMHC-087_00000247_Contig unplaced-scaffold na na JBDKXN010000053.1 <> na Primary Assembly 9073 na PvMHC-087_00000250_Contig unplaced-scaffold na na JBDKXN010000054.1 <> na Primary Assembly 9978 na PvMHC-087_00000251_Contig unplaced-scaffold na na JBDKXN010000055.1 <> na Primary Assembly 15333 na PvMHC-087_00000253_Contig unplaced-scaffold na na JBDKXN010000056.1 <> na Primary Assembly 9360 na PvMHC-087_00000254_Contig unplaced-scaffold na na JBDKXN010000057.1 <> na Primary Assembly 9669 na PvMHC-087_00000257_Contig unplaced-scaffold na na JBDKXN010000058.1 <> na Primary Assembly 8829 na PvMHC-087_00000258_Contig unplaced-scaffold na na JBDKXN010000059.1 <> na Primary Assembly 10106 na PvMHC-087_00000260_Contig unplaced-scaffold na na JBDKXN010000060.1 <> na Primary Assembly 21740 na PvMHC-087_00000261_Contig unplaced-scaffold na na JBDKXN010000061.1 <> na Primary Assembly 30447 na PvMHC-087_00000271_Contig unplaced-scaffold na na JBDKXN010000062.1 <> na Primary Assembly 12240 na PvMHC-087_00000273_Contig unplaced-scaffold na na JBDKXN010000063.1 <> na Primary Assembly 9455 na PvMHC-087_00000278_Contig unplaced-scaffold na na JBDKXN010000064.1 <> na Primary Assembly 20530 na PvMHC-087_00000279_Contig unplaced-scaffold na na JBDKXN010000065.1 <> na Primary Assembly 15848 na PvMHC-087_00000283_Contig unplaced-scaffold na na JBDKXN010000066.1 <> na Primary Assembly 15688 na PvMHC-087_00000285_Contig unplaced-scaffold na na JBDKXN010000067.1 <> na Primary Assembly 11841 na PvMHC-087_00000286_Contig unplaced-scaffold na na JBDKXN010000068.1 <> na Primary Assembly 6866 na PvMHC-087_00000289_Contig unplaced-scaffold na na JBDKXN010000069.1 <> na Primary Assembly 23362 na PvMHC-087_00000294_Contig unplaced-scaffold na na JBDKXN010000070.1 <> na Primary Assembly 20186 na PvMHC-087_00000295_Contig unplaced-scaffold na na JBDKXN010000071.1 <> na Primary Assembly 11670 na PvMHC-087_00000296_Contig unplaced-scaffold na na JBDKXN010000072.1 <> na Primary Assembly 16951 na PvMHC-087_00000299_Contig unplaced-scaffold na na JBDKXN010000073.1 <> na Primary Assembly 14340 na PvMHC-087_00000302_Contig unplaced-scaffold na na JBDKXN010000074.1 <> na Primary Assembly 21865 na PvMHC-087_00000307_Contig unplaced-scaffold na na JBDKXN010000075.1 <> na Primary Assembly 18916 na PvMHC-087_00000308_Contig unplaced-scaffold na na JBDKXN010000076.1 <> na Primary Assembly 18147 na PvMHC-087_00000309_Contig unplaced-scaffold na na JBDKXN010000077.1 <> na Primary Assembly 27327 na PvMHC-087_00000311_Contig unplaced-scaffold na na JBDKXN010000078.1 <> na Primary Assembly 30688 na PvMHC-087_00000312_Contig unplaced-scaffold na na JBDKXN010000079.1 <> na Primary Assembly 14913 na PvMHC-087_00000314_Contig unplaced-scaffold na na JBDKXN010000080.1 <> na Primary Assembly 41746 na PvMHC-087_00000315_Contig unplaced-scaffold na na JBDKXN010000081.1 <> na Primary Assembly 18707 na PvMHC-087_00000318_Contig unplaced-scaffold na na JBDKXN010000082.1 <> na Primary Assembly 14254 na PvMHC-087_00000319_Contig unplaced-scaffold na na JBDKXN010000083.1 <> na Primary Assembly 36713 na PvMHC-087_00000320_Contig unplaced-scaffold na na JBDKXN010000084.1 <> na Primary Assembly 29706 na PvMHC-087_00000321_Contig unplaced-scaffold na na JBDKXN010000085.1 <> na Primary Assembly 44995 na PvMHC-087_00000324_Contig unplaced-scaffold na na JBDKXN010000086.1 <> na Primary Assembly 30324 na PvMHC-087_00000328_Contig unplaced-scaffold na na JBDKXN010000087.1 <> na Primary Assembly 45826 na PvMHC-087_00000329_Contig unplaced-scaffold na na JBDKXN010000088.1 <> na Primary Assembly 1411 na PvMHC-087_00000335_Contig unplaced-scaffold na na JBDKXN010000089.1 <> na Primary Assembly 33029 na PvMHC-087_00000336_Contig unplaced-scaffold na na JBDKXN010000090.1 <> na Primary Assembly 18886 na PvMHC-087_00000340_Contig unplaced-scaffold na na JBDKXN010000091.1 <> na Primary Assembly 27169 na PvMHC-087_00000343_Contig unplaced-scaffold na na JBDKXN010000092.1 <> na Primary Assembly 17657 na PvMHC-087_00000344_Contig unplaced-scaffold na na JBDKXN010000093.1 <> na Primary Assembly 27928 na PvMHC-087_00000347_Contig unplaced-scaffold na na JBDKXN010000094.1 <> na Primary Assembly 30396 na PvMHC-087_00000349_Contig unplaced-scaffold na na JBDKXN010000095.1 <> na Primary Assembly 6469 na PvMHC-087_00000350_Contig unplaced-scaffold na na JBDKXN010000096.1 <> na Primary Assembly 28303 na PvMHC-087_00000352_Contig unplaced-scaffold na na JBDKXN010000097.1 <> na Primary Assembly 8800 na PvMHC-087_00000353_Contig unplaced-scaffold na na JBDKXN010000098.1 <> na Primary Assembly 9660 na PvMHC-087_00000354_Contig unplaced-scaffold na na JBDKXN010000099.1 <> na Primary Assembly 11951 na PvMHC-087_00000357_Contig unplaced-scaffold na na JBDKXN010000100.1 <> na Primary Assembly 9775 na PvMHC-087_00000359_Contig unplaced-scaffold na na JBDKXN010000101.1 <> na Primary Assembly 12621 na PvMHC-087_00000360_Contig unplaced-scaffold na na JBDKXN010000102.1 <> na Primary Assembly 9882 na PvMHC-087_00000361_Contig unplaced-scaffold na na JBDKXN010000103.1 <> na Primary Assembly 63344 na PvMHC-087_00000367_Contig unplaced-scaffold na na JBDKXN010000104.1 <> na Primary Assembly 12743 na PvMHC-087_00000372_Contig unplaced-scaffold na na JBDKXN010000105.1 <> na Primary Assembly 11362 na PvMHC-087_00000373_Contig unplaced-scaffold na na JBDKXN010000106.1 <> na Primary Assembly 13468 na PvMHC-087_00000375_Contig unplaced-scaffold na na JBDKXN010000107.1 <> na Primary Assembly 16926 na PvMHC-087_00000378_Contig unplaced-scaffold na na JBDKXN010000108.1 <> na Primary Assembly 10886 na PvMHC-087_00000379_Contig unplaced-scaffold na na JBDKXN010000109.1 <> na Primary Assembly 11098 na PvMHC-087_00000380_Contig unplaced-scaffold na na JBDKXN010000110.1 <> na Primary Assembly 17727 na PvMHC-087_00000383_Contig unplaced-scaffold na na JBDKXN010000111.1 <> na Primary Assembly 16451 na PvMHC-087_00000384_Contig unplaced-scaffold na na JBDKXN010000112.1 <> na Primary Assembly 38620 na PvMHC-087_00000385_Contig unplaced-scaffold na na JBDKXN010000113.1 <> na Primary Assembly 12922 na PvMHC-087_00000387_Contig unplaced-scaffold na na JBDKXN010000114.1 <> na Primary Assembly 20521 na PvMHC-087_00000388_Contig unplaced-scaffold na na JBDKXN010000115.1 <> na Primary Assembly 12187 na PvMHC-087_00000390_Contig unplaced-scaffold na na JBDKXN010000116.1 <> na Primary Assembly 38586 na PvMHC-087_00000392_Contig unplaced-scaffold na na JBDKXN010000117.1 <> na Primary Assembly 49298 na PvMHC-087_00000393_Contig unplaced-scaffold na na JBDKXN010000118.1 <> na Primary Assembly 7501 na PvMHC-087_00000394_Contig unplaced-scaffold na na JBDKXN010000119.1 <> na Primary Assembly 16246 na PvMHC-087_00000395_Contig unplaced-scaffold na na JBDKXN010000120.1 <> na Primary Assembly 15223 na PvMHC-087_00000396_Contig unplaced-scaffold na na JBDKXN010000121.1 <> na Primary Assembly 31496 na PvMHC-087_00000400_Contig unplaced-scaffold na na JBDKXN010000122.1 <> na Primary Assembly 22574 na PvMHC-087_00000401_Contig unplaced-scaffold na na JBDKXN010000123.1 <> na Primary Assembly 10987 na PvMHC-087_00000402_Contig unplaced-scaffold na na JBDKXN010000124.1 <> na Primary Assembly 11248 na Pv-MHC-087 assembled-molecule MT Mitochondrion CM078886.1 <> na non-nuclear 5988 na Pv-MHC-087_api assembled-molecule Pltd Apicoplast CM078887.1 <> na non-nuclear 30036 na