# Assembly name: USC_Ccil_1.0 # Organism name: Correlophus ciliatus (crested gecko) # Infraspecific name: ecotype=US Hobby # Isolate: MAA-2024a # Taxid: 143539 # BioSample: SAMN40604022 # BioProject: PRJNA1091669 # Submitter: University of Southern California # Date: 2024-06-17 # Assembly type: haploid # Release type: major # Assembly level: Scaffold # Genome representation: full # WGS project: JBBPXQ01 # Assembly method: Hifiasm v. v0.15.4-r347 # Expected final version: yes # Genome coverage: 30.0x # Sequencing technology: PacBio # RefSeq category: Reference Genome # GenBank assembly accession: GCA_040207535.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040207555.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Scaffold_1__1_contigs__length_169053633 unplaced-scaffold na na JBBPXQ010000001.1 <> na Primary Assembly 169053634 na Scaffold_2__1_contigs__length_166222924 unplaced-scaffold na na JBBPXQ010000002.1 <> na Primary Assembly 166222925 na Scaffold_3__1_contigs__length_159061888 unplaced-scaffold na na JBBPXQ010000003.1 <> na Primary Assembly 159061889 na Scaffold_4__1_contigs__length_126703200 unplaced-scaffold na na JBBPXQ010000004.1 <> na Primary Assembly 126703201 na Scaffold_5__1_contigs__length_124403076 unplaced-scaffold na na JBBPXQ010000005.1 <> na Primary Assembly 124403077 na Scaffold_6__1_contigs__length_109210968 unplaced-scaffold na na JBBPXQ010000006.1 <> na Primary Assembly 109210969 na Scaffold_7__1_contigs__length_107354281 unplaced-scaffold na na JBBPXQ010000007.1 <> na Primary Assembly 107354282 na Scaffold_8__1_contigs__length_85921597 unplaced-scaffold na na JBBPXQ010000008.1 <> na Primary Assembly 85921598 na Scaffold_9__2_contigs__length_103119859 unplaced-scaffold na na JBBPXQ010000009.1 <> na Primary Assembly 103119861 na Scaffold_10__1_contigs__length_75214382 unplaced-scaffold na na JBBPXQ010000010.1 <> na Primary Assembly 75214383 na Scaffold_11__1_contigs__length_63955018 unplaced-scaffold na na JBBPXQ010000011.1 <> na Primary Assembly 63955019 na Scaffold_12__2_contigs__length_88311244 unplaced-scaffold na na JBBPXQ010000012.1 <> na Primary Assembly 88311246 na Scaffold_13__1_contigs__length_58566467 unplaced-scaffold na na JBBPXQ010000013.1 <> na Primary Assembly 58566468 na Scaffold_14__1_contigs__length_51189015 unplaced-scaffold na na JBBPXQ010000014.1 <> na Primary Assembly 51189016 na Scaffold_15__1_contigs__length_37515369 unplaced-scaffold na na JBBPXQ010000015.1 <> na Primary Assembly 37515370 na Scaffold_16__1_contigs__length_36825484 unplaced-scaffold na na JBBPXQ010000016.1 <> na Primary Assembly 36825485 na Scaffold_17__1_contigs__length_30455113 unplaced-scaffold na na JBBPXQ010000017.1 <> na Primary Assembly 30455114 na Scaffold_18__1_contigs__length_27860774 unplaced-scaffold na na JBBPXQ010000018.1 <> na Primary Assembly 27860775 na Scaffold_19__1_contigs__length_24471578 unplaced-scaffold na na JBBPXQ010000019.1 <> na Primary Assembly 24471579 na Scaffold_20__1_contigs__length_522868 unplaced-scaffold na na JBBPXQ010000020.1 <> na Primary Assembly 522869 na Scaffold_21__1_contigs__length_426485 unplaced-scaffold na na JBBPXQ010000021.1 <> na Primary Assembly 426486 na Scaffold_22__1_contigs__length_363833 unplaced-scaffold na na JBBPXQ010000022.1 <> na Primary Assembly 363834 na Scaffold_23__1_contigs__length_175802 unplaced-scaffold na na JBBPXQ010000023.1 <> na Primary Assembly 175803 na Scaffold_24__1_contigs__length_155682 unplaced-scaffold na na JBBPXQ010000024.1 <> na Primary Assembly 155683 na Scaffold_25__1_contigs__length_144857 unplaced-scaffold na na JBBPXQ010000025.1 <> na Primary Assembly 144858 na Scaffold_26__1_contigs__length_137665 unplaced-scaffold na na JBBPXQ010000026.1 <> na Primary Assembly 137666 na Scaffold_27__1_contigs__length_134900 unplaced-scaffold na na JBBPXQ010000027.1 <> na Primary Assembly 134901 na Scaffold_28__1_contigs__length_133632 unplaced-scaffold na na JBBPXQ010000028.1 <> na Primary Assembly 133633 na Scaffold_29__1_contigs__length_121773 unplaced-scaffold na na JBBPXQ010000029.1 <> na Primary Assembly 121774 na Scaffold_30__1_contigs__length_119379 unplaced-scaffold na na JBBPXQ010000030.1 <> na Primary Assembly 119380 na Scaffold_31__1_contigs__length_111506 unplaced-scaffold na na JBBPXQ010000031.1 <> na Primary Assembly 111507 na Scaffold_32__1_contigs__length_110710 unplaced-scaffold na na JBBPXQ010000032.1 <> na Primary Assembly 110711 na Scaffold_33__1_contigs__length_108567 unplaced-scaffold na na JBBPXQ010000033.1 <> na Primary Assembly 108568 na Scaffold_34__1_contigs__length_106194 unplaced-scaffold na na JBBPXQ010000034.1 <> na Primary Assembly 106195 na Scaffold_35__1_contigs__length_105771 unplaced-scaffold na na JBBPXQ010000035.1 <> na Primary Assembly 105772 na Scaffold_36__1_contigs__length_97167 unplaced-scaffold na na JBBPXQ010000036.1 <> na Primary Assembly 97168 na Scaffold_37__1_contigs__length_95345 unplaced-scaffold na na JBBPXQ010000037.1 <> na Primary Assembly 95346 na Scaffold_38__1_contigs__length_93109 unplaced-scaffold na na JBBPXQ010000038.1 <> na Primary Assembly 93110 na Scaffold_40__1_contigs__length_91645 unplaced-scaffold na na JBBPXQ010000039.1 <> na Primary Assembly 91646 na Scaffold_41__1_contigs__length_88167 unplaced-scaffold na na JBBPXQ010000040.1 <> na Primary Assembly 88168 na Scaffold_42__1_contigs__length_83327 unplaced-scaffold na na JBBPXQ010000041.1 <> na Primary Assembly 83328 na Scaffold_43__1_contigs__length_80636 unplaced-scaffold na na JBBPXQ010000042.1 <> na Primary Assembly 80637 na Scaffold_44__1_contigs__length_79433 unplaced-scaffold na na JBBPXQ010000043.1 <> na Primary Assembly 79434 na Scaffold_45__1_contigs__length_79264 unplaced-scaffold na na JBBPXQ010000044.1 <> na Primary Assembly 79265 na Scaffold_46__1_contigs__length_77611 unplaced-scaffold na na JBBPXQ010000045.1 <> na Primary Assembly 77612 na Scaffold_47__1_contigs__length_74989 unplaced-scaffold na na JBBPXQ010000046.1 <> na Primary Assembly 74990 na Scaffold_48__1_contigs__length_69852 unplaced-scaffold na na JBBPXQ010000047.1 <> na Primary Assembly 69853 na Scaffold_49__1_contigs__length_69838 unplaced-scaffold na na JBBPXQ010000048.1 <> na Primary Assembly 69839 na Scaffold_50__1_contigs__length_69128 unplaced-scaffold na na JBBPXQ010000049.1 <> na Primary Assembly 69129 na Scaffold_51__1_contigs__length_68962 unplaced-scaffold na na JBBPXQ010000050.1 <> na Primary Assembly 68963 na Scaffold_52__1_contigs__length_67547 unplaced-scaffold na na JBBPXQ010000051.1 <> na Primary Assembly 67548 na Scaffold_53__1_contigs__length_66530 unplaced-scaffold na na JBBPXQ010000052.1 <> na Primary Assembly 66531 na Scaffold_54__1_contigs__length_65947 unplaced-scaffold na na JBBPXQ010000053.1 <> na Primary Assembly 65948 na Scaffold_55__1_contigs__length_65127 unplaced-scaffold na na JBBPXQ010000054.1 <> na Primary Assembly 65128 na Scaffold_56__1_contigs__length_62986 unplaced-scaffold na na JBBPXQ010000055.1 <> na Primary Assembly 62987 na Scaffold_57__1_contigs__length_62864 unplaced-scaffold na na JBBPXQ010000056.1 <> na Primary Assembly 62865 na Scaffold_58__1_contigs__length_62578 unplaced-scaffold na na JBBPXQ010000057.1 <> na Primary Assembly 62579 na Scaffold_59__1_contigs__length_62333 unplaced-scaffold na na JBBPXQ010000058.1 <> na Primary Assembly 62334 na Scaffold_60__1_contigs__length_57207 unplaced-scaffold na na JBBPXQ010000059.1 <> na Primary Assembly 57208 na Scaffold_61__1_contigs__length_56395 unplaced-scaffold na na JBBPXQ010000060.1 <> na Primary Assembly 56396 na Scaffold_62__1_contigs__length_54444 unplaced-scaffold na na JBBPXQ010000061.1 <> na Primary Assembly 54445 na Scaffold_63__1_contigs__length_54427 unplaced-scaffold na na JBBPXQ010000062.1 <> na Primary Assembly 54428 na Scaffold_64__1_contigs__length_54079 unplaced-scaffold na na JBBPXQ010000063.1 <> na Primary Assembly 54080 na Scaffold_65__1_contigs__length_52956 unplaced-scaffold na na JBBPXQ010000064.1 <> na Primary Assembly 52957 na Scaffold_66__1_contigs__length_52318 unplaced-scaffold na na JBBPXQ010000065.1 <> na Primary Assembly 52319 na Scaffold_67__1_contigs__length_52280 unplaced-scaffold na na JBBPXQ010000066.1 <> na Primary Assembly 52281 na Scaffold_68__1_contigs__length_50904 unplaced-scaffold na na JBBPXQ010000067.1 <> na Primary Assembly 50905 na Scaffold_69__1_contigs__length_50249 unplaced-scaffold na na JBBPXQ010000068.1 <> na Primary Assembly 50250 na Scaffold_70__1_contigs__length_49864 unplaced-scaffold na na JBBPXQ010000069.1 <> na Primary Assembly 49865 na Scaffold_71__1_contigs__length_49467 unplaced-scaffold na na JBBPXQ010000070.1 <> na Primary Assembly 49468 na Scaffold_72__1_contigs__length_49115 unplaced-scaffold na na JBBPXQ010000071.1 <> na Primary Assembly 49116 na Scaffold_73__1_contigs__length_48215 unplaced-scaffold na na JBBPXQ010000072.1 <> na Primary Assembly 48216 na Scaffold_74__1_contigs__length_44894 unplaced-scaffold na na JBBPXQ010000073.1 <> na Primary Assembly 44895 na Scaffold_75__1_contigs__length_42216 unplaced-scaffold na na JBBPXQ010000074.1 <> na Primary Assembly 42217 na Scaffold_76__1_contigs__length_42169 unplaced-scaffold na na JBBPXQ010000075.1 <> na Primary Assembly 42170 na Scaffold_77__1_contigs__length_41680 unplaced-scaffold na na JBBPXQ010000076.1 <> na Primary Assembly 41681 na Scaffold_78__1_contigs__length_41333 unplaced-scaffold na na JBBPXQ010000077.1 <> na Primary Assembly 41334 na Scaffold_79__1_contigs__length_39728 unplaced-scaffold na na JBBPXQ010000078.1 <> na Primary Assembly 39729 na Scaffold_80__1_contigs__length_39368 unplaced-scaffold na na JBBPXQ010000079.1 <> na Primary Assembly 39369 na Scaffold_81__1_contigs__length_37176 unplaced-scaffold na na JBBPXQ010000080.1 <> na Primary Assembly 37177 na Scaffold_82__1_contigs__length_36574 unplaced-scaffold na na JBBPXQ010000081.1 <> na Primary Assembly 36575 na Scaffold_83__1_contigs__length_36358 unplaced-scaffold na na JBBPXQ010000082.1 <> na Primary Assembly 36359 na Scaffold_84__1_contigs__length_35726 unplaced-scaffold na na JBBPXQ010000083.1 <> na Primary Assembly 35727 na Scaffold_85__1_contigs__length_35498 unplaced-scaffold na na JBBPXQ010000084.1 <> na Primary Assembly 35499 na Scaffold_86__1_contigs__length_34973 unplaced-scaffold na na JBBPXQ010000085.1 <> na Primary Assembly 34974 na Scaffold_87__1_contigs__length_34300 unplaced-scaffold na na JBBPXQ010000086.1 <> na Primary Assembly 34301 na Scaffold_88__1_contigs__length_34075 unplaced-scaffold na na JBBPXQ010000087.1 <> na Primary Assembly 34076 na Scaffold_89__1_contigs__length_33884 unplaced-scaffold na na JBBPXQ010000088.1 <> na Primary Assembly 33885 na Scaffold_90__1_contigs__length_33713 unplaced-scaffold na na JBBPXQ010000089.1 <> na Primary Assembly 33714 na Scaffold_91__1_contigs__length_32932 unplaced-scaffold na na JBBPXQ010000090.1 <> na Primary Assembly 32933 na Scaffold_92__1_contigs__length_32697 unplaced-scaffold na na JBBPXQ010000091.1 <> na Primary Assembly 32698 na Scaffold_93__1_contigs__length_32356 unplaced-scaffold na na JBBPXQ010000092.1 <> na Primary Assembly 32357 na Scaffold_94__1_contigs__length_31818 unplaced-scaffold na na JBBPXQ010000093.1 <> na Primary Assembly 31819 na Scaffold_95__1_contigs__length_31606 unplaced-scaffold na na JBBPXQ010000094.1 <> na Primary Assembly 31607 na Scaffold_96__1_contigs__length_31469 unplaced-scaffold na na JBBPXQ010000095.1 <> na Primary Assembly 31470 na Scaffold_97__1_contigs__length_31216 unplaced-scaffold na na JBBPXQ010000096.1 <> na Primary Assembly 31217 na Scaffold_98__1_contigs__length_30849 unplaced-scaffold na na JBBPXQ010000097.1 <> na Primary Assembly 30850 na Scaffold_99__1_contigs__length_30844 unplaced-scaffold na na JBBPXQ010000098.1 <> na Primary Assembly 30845 na Scaffold_100__1_contigs__length_29832 unplaced-scaffold na na JBBPXQ010000099.1 <> na Primary Assembly 29833 na Scaffold_101__1_contigs__length_29382 unplaced-scaffold na na JBBPXQ010000100.1 <> na Primary Assembly 29383 na Scaffold_102__1_contigs__length_29227 unplaced-scaffold na na JBBPXQ010000101.1 <> na Primary Assembly 29228 na Scaffold_103__1_contigs__length_29073 unplaced-scaffold na na JBBPXQ010000102.1 <> na Primary Assembly 29074 na Scaffold_104__1_contigs__length_28701 unplaced-scaffold na na JBBPXQ010000103.1 <> na Primary Assembly 28702 na Scaffold_105__1_contigs__length_28685 unplaced-scaffold na na JBBPXQ010000104.1 <> na Primary Assembly 28686 na Scaffold_106__1_contigs__length_28421 unplaced-scaffold na na JBBPXQ010000105.1 <> na Primary Assembly 28422 na Scaffold_107__1_contigs__length_28030 unplaced-scaffold na na JBBPXQ010000106.1 <> na Primary Assembly 28031 na Scaffold_108__1_contigs__length_27949 unplaced-scaffold na na JBBPXQ010000107.1 <> na Primary Assembly 27950 na Scaffold_109__1_contigs__length_27849 unplaced-scaffold na na JBBPXQ010000108.1 <> na Primary Assembly 27850 na Scaffold_110__1_contigs__length_27805 unplaced-scaffold na na JBBPXQ010000109.1 <> na Primary Assembly 27806 na Scaffold_111__1_contigs__length_27790 unplaced-scaffold na na JBBPXQ010000110.1 <> na Primary Assembly 27791 na Scaffold_112__1_contigs__length_27617 unplaced-scaffold na na JBBPXQ010000111.1 <> na Primary Assembly 27618 na Scaffold_113__1_contigs__length_27252 unplaced-scaffold na na JBBPXQ010000112.1 <> na Primary Assembly 27253 na Scaffold_114__1_contigs__length_26753 unplaced-scaffold na na JBBPXQ010000113.1 <> na Primary Assembly 26754 na Scaffold_115__1_contigs__length_26063 unplaced-scaffold na na JBBPXQ010000114.1 <> na Primary Assembly 26064 na Scaffold_116__1_contigs__length_26011 unplaced-scaffold na na JBBPXQ010000115.1 <> na Primary Assembly 26012 na Scaffold_117__1_contigs__length_25962 unplaced-scaffold na na JBBPXQ010000116.1 <> na Primary Assembly 25963 na Scaffold_118__1_contigs__length_25456 unplaced-scaffold na na JBBPXQ010000117.1 <> na Primary Assembly 25457 na Scaffold_119__1_contigs__length_25428 unplaced-scaffold na na JBBPXQ010000118.1 <> na Primary Assembly 25429 na Scaffold_120__1_contigs__length_24704 unplaced-scaffold na na JBBPXQ010000119.1 <> na Primary Assembly 24705 na Scaffold_121__1_contigs__length_24530 unplaced-scaffold na na JBBPXQ010000120.1 <> na Primary Assembly 24531 na Scaffold_122__1_contigs__length_24067 unplaced-scaffold na na JBBPXQ010000121.1 <> na Primary Assembly 24068 na Scaffold_123__1_contigs__length_23845 unplaced-scaffold na na JBBPXQ010000122.1 <> na Primary Assembly 23846 na Scaffold_124__1_contigs__length_21276 unplaced-scaffold na na JBBPXQ010000123.1 <> na Primary Assembly 21277 na Scaffold_125__1_contigs__length_21203 unplaced-scaffold na na JBBPXQ010000124.1 <> na Primary Assembly 21204 na Scaffold_126__1_contigs__length_20917 unplaced-scaffold na na JBBPXQ010000125.1 <> na Primary Assembly 20918 na Scaffold_127__1_contigs__length_20832 unplaced-scaffold na na JBBPXQ010000126.1 <> na Primary Assembly 20833 na Scaffold_128__1_contigs__length_20450 unplaced-scaffold na na JBBPXQ010000127.1 <> na Primary Assembly 20451 na Scaffold_129__1_contigs__length_20393 unplaced-scaffold na na JBBPXQ010000128.1 <> na Primary Assembly 20394 na Scaffold_130__1_contigs__length_20073 unplaced-scaffold na na JBBPXQ010000129.1 <> na Primary Assembly 20074 na Scaffold_131__1_contigs__length_19537 unplaced-scaffold na na JBBPXQ010000130.1 <> na Primary Assembly 19538 na Scaffold_132__1_contigs__length_19422 unplaced-scaffold na na JBBPXQ010000131.1 <> na Primary Assembly 19423 na Scaffold_133__1_contigs__length_19322 unplaced-scaffold na na JBBPXQ010000132.1 <> na Primary Assembly 19323 na Scaffold_134__1_contigs__length_19173 unplaced-scaffold na na JBBPXQ010000133.1 <> na Primary Assembly 19174 na Scaffold_135__1_contigs__length_19064 unplaced-scaffold na na JBBPXQ010000134.1 <> na Primary Assembly 19065 na Scaffold_136__1_contigs__length_19042 unplaced-scaffold na na JBBPXQ010000135.1 <> na Primary Assembly 19043 na Scaffold_137__1_contigs__length_18911 unplaced-scaffold na na JBBPXQ010000136.1 <> na Primary Assembly 18912 na Scaffold_138__1_contigs__length_18607 unplaced-scaffold na na JBBPXQ010000137.1 <> na Primary Assembly 18608 na Scaffold_139__1_contigs__length_18486 unplaced-scaffold na na JBBPXQ010000138.1 <> na Primary Assembly 18487 na Scaffold_140__1_contigs__length_18341 unplaced-scaffold na na JBBPXQ010000139.1 <> na Primary Assembly 18342 na Scaffold_141__1_contigs__length_18273 unplaced-scaffold na na JBBPXQ010000140.1 <> na Primary Assembly 18274 na Scaffold_142__1_contigs__length_17794 unplaced-scaffold na na JBBPXQ010000141.1 <> na Primary Assembly 17795 na Scaffold_143__1_contigs__length_17752 unplaced-scaffold na na JBBPXQ010000142.1 <> na Primary Assembly 17753 na Scaffold_144__1_contigs__length_17081 unplaced-scaffold na na JBBPXQ010000143.1 <> na Primary Assembly 17082 na Scaffold_145__1_contigs__length_16847 unplaced-scaffold na na JBBPXQ010000144.1 <> na Primary Assembly 16848 na Scaffold_146__1_contigs__length_16625 unplaced-scaffold na na JBBPXQ010000145.1 <> na Primary Assembly 16626 na Scaffold_147__1_contigs__length_15762 unplaced-scaffold na na JBBPXQ010000146.1 <> na Primary Assembly 15763 na Scaffold_148__1_contigs__length_15627 unplaced-scaffold na na JBBPXQ010000147.1 <> na Primary Assembly 15628 na Scaffold_149__1_contigs__length_15071 unplaced-scaffold na na JBBPXQ010000148.1 <> na Primary Assembly 15072 na Scaffold_150__1_contigs__length_14249 unplaced-scaffold na na JBBPXQ010000149.1 <> na Primary Assembly 14250 na Scaffold_151__1_contigs__length_13085 unplaced-scaffold na na JBBPXQ010000150.1 <> na Primary Assembly 13086 na Scaffold_152__1_contigs__length_12429 unplaced-scaffold na na JBBPXQ010000151.1 <> na Primary Assembly 12430 na