# Assembly name: LycPic1.final.hap2 # Organism name: Lycaon pictus (African hunting dog) # Isolate: LycPic1 # Sex: male # Taxid: 9622 # BioSample: SAMN36939365 # BioProject: PRJNA1099604 # Submitter: University of Copenhagen # Date: 2024-08-01 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBCEDD01 # Assembly method: hifiasm v. 0.19.7-r598; purge_dups v. 1.2.6; yahs v. 1.1 # Expected final version: yes # Genome coverage: 43.4x # Sequencing technology: Pacbio HiFi; Arima HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_040955705.1 # Linked assembly: GCA_040955645.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_040955845.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM082672.1 <> na Primary Assembly 123051133 na chr2 assembled-molecule 2 Chromosome CM082673.1 <> na Primary Assembly 85769703 na chr3 assembled-molecule 3 Chromosome CM082674.1 <> na Primary Assembly 93716173 na chr4 assembled-molecule 4 Chromosome CM082675.1 <> na Primary Assembly 89826399 na chr5 assembled-molecule 5 Chromosome CM082676.1 <> na Primary Assembly 89668036 na chr6 assembled-molecule 6 Chromosome CM082677.1 <> na Primary Assembly 78464253 na chr7 assembled-molecule 7 Chromosome CM082678.1 <> na Primary Assembly 82828834 na chr8 assembled-molecule 8 Chromosome CM082679.1 <> na Primary Assembly 76898920 na chr9 assembled-molecule 9 Chromosome CM082680.1 <> na Primary Assembly 62409274 na chr10 assembled-molecule 10 Chromosome CM082681.1 <> na Primary Assembly 71284725 na chr11 assembled-molecule 11 Chromosome CM082682.1 <> na Primary Assembly 76456663 na chr12 assembled-molecule 12 Chromosome CM082683.1 <> na Primary Assembly 73787264 na chr13 assembled-molecule 13 Chromosome CM082684.1 <> na Primary Assembly 63614149 na chr14 assembled-molecule 14 Chromosome CM082685.1 <> na Primary Assembly 60996451 na chr15 assembled-molecule 15 Chromosome CM082686.1 <> na Primary Assembly 65380015 na chr16 assembled-molecule 16 Chromosome CM082687.1 <> na Primary Assembly 60498734 na chr17 assembled-molecule 17 Chromosome CM082688.1 <> na Primary Assembly 64477381 na chr18 assembled-molecule 18 Chromosome CM082689.1 <> na Primary Assembly 57055976 na chr19 assembled-molecule 19 Chromosome CM082690.1 <> na Primary Assembly 56307621 na chr20 assembled-molecule 20 Chromosome CM082691.1 <> na Primary Assembly 58877187 na chr21 assembled-molecule 21 Chromosome CM082692.1 <> na Primary Assembly 51687310 na chr22 assembled-molecule 22 Chromosome CM082693.1 <> na Primary Assembly 62082571 na chr23 assembled-molecule 23 Chromosome CM082694.1 <> na Primary Assembly 52775875 na chr24 assembled-molecule 24 Chromosome CM082695.1 <> na Primary Assembly 48878570 na chr25 assembled-molecule 25 Chromosome CM082696.1 <> na Primary Assembly 52955759 na chr26 assembled-molecule 26 Chromosome CM082697.1 <> na Primary Assembly 39993794 na chr27 assembled-molecule 27 Chromosome CM082698.1 <> na Primary Assembly 46027797 na chr28 assembled-molecule 28 Chromosome CM082699.1 <> na Primary Assembly 41748108 na chr29 assembled-molecule 29 Chromosome CM082700.1 <> na Primary Assembly 43165593 na chr30 assembled-molecule 30 Chromosome CM082701.1 <> na Primary Assembly 41871503 na chr31 assembled-molecule 31 Chromosome CM082702.1 <> na Primary Assembly 40341754 na chr32 assembled-molecule 32 Chromosome CM082703.1 <> na Primary Assembly 39426608 na chr33 assembled-molecule 33 Chromosome CM082704.1 <> na Primary Assembly 31589995 na chr34 assembled-molecule 34 Chromosome CM082705.1 <> na Primary Assembly 43485207 na chr35 assembled-molecule 35 Chromosome CM082706.1 <> na Primary Assembly 27196656 na chr36 assembled-molecule 36 Chromosome CM082707.1 <> na Primary Assembly 31516337 na chr37 assembled-molecule 37 Chromosome CM082708.1 <> na Primary Assembly 31058414 na chr38 assembled-molecule 38 Chromosome CM082709.1 <> na Primary Assembly 25918728 na chrX assembled-molecule X Chromosome CM082710.1 <> na Primary Assembly 125541836 na scaffold_63 unplaced-scaffold na na JBCEDD010000001.1 <> na Primary Assembly 98000 na scaffold_65 unplaced-scaffold na na JBCEDD010000004.1 <> na Primary Assembly 80689 na scaffold_43 unplaced-scaffold na na JBCEDD010000008.1 <> na Primary Assembly 4765011 na scaffold_53 unplaced-scaffold na na JBCEDD010000009.1 <> na Primary Assembly 309011 na scaffold_75 unplaced-scaffold na na JBCEDD010000011.1 <> na Primary Assembly 50000 na scaffold_73 unplaced-scaffold na na JBCEDD010000014.1 <> na Primary Assembly 1000 na scaffold_45 unplaced-scaffold na na JBCEDD010000015.1 <> na Primary Assembly 836923 na scaffold_55 unplaced-scaffold na na JBCEDD010000016.1 <> na Primary Assembly 294492 na scaffold_72 unplaced-scaffold na na JBCEDD010000023.1 <> na Primary Assembly 50198 na scaffold_52 unplaced-scaffold na na JBCEDD010000024.1 <> na Primary Assembly 328000 na scaffold_42 unplaced-scaffold na na JBCEDD010000026.1 <> na Primary Assembly 178385 na scaffold_62 unplaced-scaffold na na JBCEDD010000033.1 <> na Primary Assembly 130687 na scaffold_50 unplaced-scaffold na na JBCEDD010000035.1 <> na Primary Assembly 483374 na scaffold_40 unplaced-scaffold na na JBCEDD010000036.1 <> na Primary Assembly 196008 na scaffold_70 unplaced-scaffold na na JBCEDD010000038.1 <> na Primary Assembly 57000 na scaffold_60 unplaced-scaffold na na JBCEDD010000043.1 <> na Primary Assembly 192970 na scaffold_57 unplaced-scaffold na na JBCEDD010000050.1 <> na Primary Assembly 259655 na scaffold_47 unplaced-scaffold na na JBCEDD010000051.1 <> na Primary Assembly 539388 na scaffold_46 unplaced-scaffold na na JBCEDD010000052.1 <> na Primary Assembly 549750 na scaffold_56 unplaced-scaffold na na JBCEDD010000053.1 <> na Primary Assembly 269252 na scaffold_74 unplaced-scaffold na na JBCEDD010000054.1 <> na Primary Assembly 5000 na scaffold_71 unplaced-scaffold na na JBCEDD010000056.1 <> na Primary Assembly 51000 na scaffold_68 unplaced-scaffold na na JBCEDD010000058.1 <> na Primary Assembly 63000 na scaffold_54 unplaced-scaffold na na JBCEDD010000059.1 <> na Primary Assembly 296000 na scaffold_44 unplaced-scaffold na na JBCEDD010000060.1 <> na Primary Assembly 973202 na scaffold_41 unplaced-scaffold na na JBCEDD010000061.1 <> na Primary Assembly 2007351 na scaffold_51 unplaced-scaffold na na JBCEDD010000062.1 <> na Primary Assembly 343143 na scaffold_59 unplaced-scaffold na na JBCEDD010000063.1 <> na Primary Assembly 198341 na scaffold_49 unplaced-scaffold na na JBCEDD010000065.1 <> na Primary Assembly 515990 na scaffold_66 unplaced-scaffold na na JBCEDD010000069.1 <> na Primary Assembly 77433 na scaffold_67 unplaced-scaffold na na JBCEDD010000070.1 <> na Primary Assembly 73468 na scaffold_58 unplaced-scaffold na na JBCEDD010000071.1 <> na Primary Assembly 248133 na scaffold_48 unplaced-scaffold na na JBCEDD010000072.1 <> na Primary Assembly 529905 na scaffold_69 unplaced-scaffold na na JBCEDD010000073.1 <> na Primary Assembly 61000 na scaffold_64 unplaced-scaffold na na JBCEDD010000074.1 <> na Primary Assembly 95940 na scaffold_61 unplaced-scaffold na na JBCEDD010000075.1 <> na Primary Assembly 155385 na mtDNA unplaced-scaffold na na JBCEDD010000076.1 <> na Primary Assembly 16718 na