# Assembly name: HG01099_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG01099 # Sex: male # Taxid: 9606 # BioSample: SAMN26237494 # BioProject: PRJNA1156097 # Submitter: UCSC Genomics Institute # Date: 2024-09-19 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHDRQ01 # Assembly method: Hifiasm v. 0.19.7 # Expected final version: no # Genome coverage: 64x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042026525.1 # Linked assembly: GCA_042027475.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042026815.1 Primary Assembly ## GCA_042026915.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG01099#2#h2tg000001l assembled-molecule 1 Chromosome CM086269.1 <> na Primary Assembly 246931758 na HG01099#2#h2tg000015l assembled-molecule 2 Chromosome CM086270.1 <> na Primary Assembly 240827838 na HG01099#2#h2tg000009l assembled-molecule 6 Chromosome CM086271.1 <> na Primary Assembly 172572154 na HG01099#2#h2tg000016l assembled-molecule 7 Chromosome CM086272.1 <> na Primary Assembly 161715914 na HG01099#2#h2tg000006l assembled-molecule 11 Chromosome CM086273.1 <> na Primary Assembly 132654058 na HG01099#2#h2tg000018l assembled-molecule 16 Chromosome CM086274.1 <> na Primary Assembly 90789699 na HG01099#2#h2tg000005l assembled-molecule 17 Chromosome CM086275.1 <> na Primary Assembly 82417749 na HG01099#2#h2tg000014l assembled-molecule 18 Chromosome CM086276.1 <> na Primary Assembly 80284663 na HG01099#2#h2tg000025l assembled-molecule 19 Chromosome CM086277.1 <> na Primary Assembly 61114526 na HG01099#2#h2tg000021l assembled-molecule X Chromosome CM086278.1 <> na Primary Assembly 153473127 na HG01099#2#h2tg000003l unplaced-scaffold na na JBHDRQ010000002.1 <> na Primary Assembly 97095848 na HG01099#2#h2tg000004l unplaced-scaffold na na JBHDRQ010000003.1 <> na Primary Assembly 183143517 na HG01099#2#h2tg000007l unplaced-scaffold na na JBHDRQ010000005.1 <> na Primary Assembly 98471767 na HG01099#2#h2tg000011l unplaced-scaffold na na JBHDRQ010000007.1 <> na Primary Assembly 201095941 na HG01099#2#h2tg000012l unplaced-scaffold na na JBHDRQ010000008.1 <> na Primary Assembly 41962522 na HG01099#2#h2tg000013l unplaced-scaffold na na JBHDRQ010000009.1 <> na Primary Assembly 129710428 na HG01099#2#h2tg000017l unplaced-scaffold na na JBHDRQ010000012.1 <> na Primary Assembly 134039818 na HG01099#2#h2tg000020l unplaced-scaffold na na JBHDRQ010000013.1 <> na Primary Assembly 51155481 na HG01099#2#h2tg000022l unplaced-scaffold na na JBHDRQ010000015.1 <> na Primary Assembly 40492738 na HG01099#2#h2tg000023l unplaced-scaffold na na JBHDRQ010000016.1 <> na Primary Assembly 48003254 na HG01099#2#h2tg000029l unplaced-scaffold na na JBHDRQ010000018.1 <> na Primary Assembly 82934 na HG01099#2#h2tg000030l unplaced-scaffold na na JBHDRQ010000019.1 <> na Primary Assembly 859647 na HG01099#2#h2tg000034l unplaced-scaffold na na JBHDRQ010000020.1 <> na Primary Assembly 95566 na HG01099#2#h2tg000036l unplaced-scaffold na na JBHDRQ010000021.1 <> na Primary Assembly 909735 na HG01099#2#h2tg000040l unplaced-scaffold na na JBHDRQ010000022.1 <> na Primary Assembly 211829 na HG01099#2#h2tg000041l unplaced-scaffold na na JBHDRQ010000023.1 <> na Primary Assembly 1348877 na HG01099#2#h2tg000042l unplaced-scaffold na na JBHDRQ010000024.1 <> na Primary Assembly 4934553 na HG01099#2#h2tg000043l unplaced-scaffold na na JBHDRQ010000025.1 <> na Primary Assembly 274021 na HG01099#2#h2tg000044l unplaced-scaffold na na JBHDRQ010000026.1 <> na Primary Assembly 214772 na HG01099#2#h2tg000049l unplaced-scaffold na na JBHDRQ010000027.1 <> na Primary Assembly 138226 na HG01099#2#h2tg000054l unplaced-scaffold na na JBHDRQ010000028.1 <> na Primary Assembly 111206 na HG01099#2#h2tg000060l unplaced-scaffold na na JBHDRQ010000029.1 <> na Primary Assembly 101648 na HG01099#2#h2tg000063l unplaced-scaffold na na JBHDRQ010000030.1 <> na Primary Assembly 467573 na HG01099#2#h2tg000065l unplaced-scaffold na na JBHDRQ010000031.1 <> na Primary Assembly 52713 na HG01099#2#h2tg000068l unplaced-scaffold na na JBHDRQ010000032.1 <> na Primary Assembly 92812 na HG01099#2#h2tg000069l unplaced-scaffold na na JBHDRQ010000033.1 <> na Primary Assembly 128139 na HG01099#2#h2tg000074l unplaced-scaffold na na JBHDRQ010000034.1 <> na Primary Assembly 54157 na HG01099#2#h2tg000075l unplaced-scaffold na na JBHDRQ010000035.1 <> na Primary Assembly 102014 na HG01099#2#h2tg000077l unplaced-scaffold na na JBHDRQ010000036.1 <> na Primary Assembly 57418 na HG01099#2#h2tg000080l unplaced-scaffold na na JBHDRQ010000037.1 <> na Primary Assembly 146975 na HG01099#2#h2tg000081l unplaced-scaffold na na JBHDRQ010000038.1 <> na Primary Assembly 54407 na HG01099#2#h2tg000082l unplaced-scaffold na na JBHDRQ010000039.1 <> na Primary Assembly 64432 na HG01099#2#h2tg000084l unplaced-scaffold na na JBHDRQ010000040.1 <> na Primary Assembly 76030 na HG01099#2#h2tg000086l unplaced-scaffold na na JBHDRQ010000041.1 <> na Primary Assembly 57041 na HG01099#2#h2tg000088l unplaced-scaffold na na JBHDRQ010000042.1 <> na Primary Assembly 114380 na HG01099#2#h2tg000090l unplaced-scaffold na na JBHDRQ010000043.1 <> na Primary Assembly 51345 na HG01099#2#h2tg000096l unplaced-scaffold na na JBHDRQ010000044.1 <> na Primary Assembly 100791 na HG01099#2#h2tg000098l unplaced-scaffold na na JBHDRQ010000045.1 <> na Primary Assembly 63048 na HG01099#2#h2tg000103l unplaced-scaffold na na JBHDRQ010000046.1 <> na Primary Assembly 52103 na HG01099#2#h2tg000111l unplaced-scaffold na na JBHDRQ010000047.1 <> na Primary Assembly 53171 na HG01099#2#h2tg000115l unplaced-scaffold na na JBHDRQ010000048.1 <> na Primary Assembly 53309 na HG01099#2#h2tg000002l unplaced-scaffold na na JBHDRQ010000049.1 <> na Primary Assembly 141348631 na HG01099#2#h2tg000008l unplaced-scaffold na na JBHDRQ010000051.1 <> na Primary Assembly 133959590 na HG01099#2#h2tg000010l unplaced-scaffold na na JBHDRQ010000052.1 <> na Primary Assembly 110420918 na HG01099#2#h2tg000019l unplaced-scaffold na na JBHDRQ010000055.1 <> na Primary Assembly 4169447 na HG01099#2#h2tg000024l unplaced-scaffold na na JBHDRQ010000056.1 <> na Primary Assembly 92922433 na HG01099#2#h2tg000026l unplaced-scaffold na na JBHDRQ010000057.1 <> na Primary Assembly 67269473 na HG01099#2#h2tg000027l unplaced-scaffold na na JBHDRQ010000058.1 <> na Primary Assembly 3943830 na HG01099#2#h2tg000028l unplaced-scaffold na na JBHDRQ010000059.1 <> na Primary Assembly 146049 na HG01099#2#h2tg000031l unplaced-scaffold na na JBHDRQ010000060.1 <> na Primary Assembly 434536 na HG01099#2#h2tg000032l unplaced-scaffold na na JBHDRQ010000061.1 <> na Primary Assembly 3878651 na HG01099#2#h2tg000033l unplaced-scaffold na na JBHDRQ010000062.1 <> na Primary Assembly 257740 na HG01099#2#h2tg000035l unplaced-scaffold na na JBHDRQ010000063.1 <> na Primary Assembly 270293 na HG01099#2#h2tg000038l unplaced-scaffold na na JBHDRQ010000064.1 <> na Primary Assembly 741463 na HG01099#2#h2tg000039l unplaced-scaffold na na JBHDRQ010000065.1 <> na Primary Assembly 2518694 na HG01099#2#h2tg000045l unplaced-scaffold na na JBHDRQ010000066.1 <> na Primary Assembly 2686957 na HG01099#2#h2tg000046l unplaced-scaffold na na JBHDRQ010000067.1 <> na Primary Assembly 498502 na HG01099#2#h2tg000047l unplaced-scaffold na na JBHDRQ010000068.1 <> na Primary Assembly 97775 na HG01099#2#h2tg000050l unplaced-scaffold na na JBHDRQ010000069.1 <> na Primary Assembly 181097 na HG01099#2#h2tg000051l unplaced-scaffold na na JBHDRQ010000070.1 <> na Primary Assembly 129747 na HG01099#2#h2tg000055l unplaced-scaffold na na JBHDRQ010000071.1 <> na Primary Assembly 87673 na HG01099#2#h2tg000057l unplaced-scaffold na na JBHDRQ010000072.1 <> na Primary Assembly 152862 na HG01099#2#h2tg000058l unplaced-scaffold na na JBHDRQ010000073.1 <> na Primary Assembly 129460 na HG01099#2#h2tg000059l unplaced-scaffold na na JBHDRQ010000074.1 <> na Primary Assembly 113804 na HG01099#2#h2tg000061l unplaced-scaffold na na JBHDRQ010000075.1 <> na Primary Assembly 175458 na HG01099#2#h2tg000062l unplaced-scaffold na na JBHDRQ010000076.1 <> na Primary Assembly 142242 na HG01099#2#h2tg000064l unplaced-scaffold na na JBHDRQ010000077.1 <> na Primary Assembly 185036 na HG01099#2#h2tg000066l unplaced-scaffold na na JBHDRQ010000078.1 <> na Primary Assembly 56057 na HG01099#2#h2tg000070l unplaced-scaffold na na JBHDRQ010000079.1 <> na Primary Assembly 102438 na HG01099#2#h2tg000071l unplaced-scaffold na na JBHDRQ010000080.1 <> na Primary Assembly 294349 na HG01099#2#h2tg000076l unplaced-scaffold na na JBHDRQ010000081.1 <> na Primary Assembly 67236 na HG01099#2#h2tg000078l unplaced-scaffold na na JBHDRQ010000082.1 <> na Primary Assembly 179557 na HG01099#2#h2tg000083l unplaced-scaffold na na JBHDRQ010000083.1 <> na Primary Assembly 63329 na HG01099#2#h2tg000085l unplaced-scaffold na na JBHDRQ010000084.1 <> na Primary Assembly 53549 na HG01099#2#h2tg000087l unplaced-scaffold na na JBHDRQ010000085.1 <> na Primary Assembly 68128 na HG01099#2#h2tg000089l unplaced-scaffold na na JBHDRQ010000086.1 <> na Primary Assembly 91615 na HG01099#2#h2tg000102l unplaced-scaffold na na JBHDRQ010000087.1 <> na Primary Assembly 52673 na HG01099#2#h2tg000106l unplaced-scaffold na na JBHDRQ010000088.1 <> na Primary Assembly 99220 na HG01099#2#h2tg000132l unplaced-scaffold na na JBHDRQ010000089.1 <> na Primary Assembly 52564 na HG01099#2#ptg000001c_rc_rotated unlocalized-scaffold MT Mitochondrion JBHDRQ010000090.1 <> na non-nuclear 16569 na