# Assembly name: HG02004_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG02004 # Sex: female # Taxid: 9606 # BioSample: SAMN26237502 # BioProject: PRJNA1156099 # Submitter: UCSC Genomics Institute # Date: 2024-09-19 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHDRU01 # Assembly method: Hifiasm v. 0.19.7 # Expected final version: no # Genome coverage: 64x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042027105.1 # Linked assembly: GCA_042027455.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042027335.1 Primary Assembly ## GCA_042027395.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG02004#2#h2tg000006l assembled-molecule 1 Chromosome CM086310.1 <> na Primary Assembly 244564153 na HG02004#2#h2tg000003l assembled-molecule 4 Chromosome CM086311.1 <> na Primary Assembly 192654907 na HG02004#2#h2tg000004l assembled-molecule 7 Chromosome CM086312.1 <> na Primary Assembly 161709771 na HG02004#2#h2tg000001l assembled-molecule 8 Chromosome CM086313.1 <> na Primary Assembly 144950149 na HG02004#2#h2tg000022l assembled-molecule 10 Chromosome CM086314.1 <> na Primary Assembly 135629571 na HG02004#2#h2tg000021l assembled-molecule 11 Chromosome CM086315.1 <> na Primary Assembly 134151822 na HG02004#2#h2tg000019l assembled-molecule 12 Chromosome CM086316.1 <> na Primary Assembly 133602223 na HG02004#2#h2tg000025l assembled-molecule 16 Chromosome CM086317.1 <> na Primary Assembly 89684175 na HG02004#2#h2tg000014l assembled-molecule X Chromosome CM086318.1 <> na Primary Assembly 154360652 na HG02004#2#h2tg000002l unplaced-scaffold na na JBHDRU010000002.1 <> na Primary Assembly 147791384 na HG02004#2#h2tg000007l unplaced-scaffold na na JBHDRU010000004.1 <> na Primary Assembly 110271864 na HG02004#2#h2tg000010l unplaced-scaffold na na JBHDRU010000005.1 <> na Primary Assembly 24522518 na HG02004#2#h2tg000012l unplaced-scaffold na na JBHDRU010000006.1 <> na Primary Assembly 50153852 na HG02004#2#h2tg000015l unplaced-scaffold na na JBHDRU010000007.1 <> na Primary Assembly 45415521 na HG02004#2#h2tg000017l unplaced-scaffold na na JBHDRU010000008.1 <> na Primary Assembly 97379001 na HG02004#2#h2tg000018l unplaced-scaffold na na JBHDRU010000009.1 <> na Primary Assembly 105868558 na HG02004#2#h2tg000020l unplaced-scaffold na na JBHDRU010000010.1 <> na Primary Assembly 57160488 na HG02004#2#h2tg000026l unplaced-scaffold na na JBHDRU010000013.1 <> na Primary Assembly 112018898 na HG02004#2#h2tg000028l unplaced-scaffold na na JBHDRU010000014.1 <> na Primary Assembly 40611350 na HG02004#2#h2tg000030l unplaced-scaffold na na JBHDRU010000015.1 <> na Primary Assembly 61890832 na HG02004#2#h2tg000035l unplaced-scaffold na na JBHDRU010000016.1 <> na Primary Assembly 419795 na HG02004#2#h2tg000036l unplaced-scaffold na na JBHDRU010000017.1 <> na Primary Assembly 331282 na HG02004#2#h2tg000037l unplaced-scaffold na na JBHDRU010000018.1 <> na Primary Assembly 279146 na HG02004#2#h2tg000039l unplaced-scaffold na na JBHDRU010000019.1 <> na Primary Assembly 93277 na HG02004#2#h2tg000046l unplaced-scaffold na na JBHDRU010000020.1 <> na Primary Assembly 790727 na HG02004#2#h2tg000048l unplaced-scaffold na na JBHDRU010000021.1 <> na Primary Assembly 327757 na HG02004#2#h2tg000050l unplaced-scaffold na na JBHDRU010000022.1 <> na Primary Assembly 586995 na HG02004#2#h2tg000051l unplaced-scaffold na na JBHDRU010000023.1 <> na Primary Assembly 296424 na HG02004#2#h2tg000055l unplaced-scaffold na na JBHDRU010000024.1 <> na Primary Assembly 198220 na HG02004#2#h2tg000058l unplaced-scaffold na na JBHDRU010000025.1 <> na Primary Assembly 121467 na HG02004#2#h2tg000060l unplaced-scaffold na na JBHDRU010000026.1 <> na Primary Assembly 157189 na HG02004#2#h2tg000063l unplaced-scaffold na na JBHDRU010000027.1 <> na Primary Assembly 214184 na HG02004#2#h2tg000072l unplaced-scaffold na na JBHDRU010000028.1 <> na Primary Assembly 246002 na HG02004#2#h2tg000073l unplaced-scaffold na na JBHDRU010000029.1 <> na Primary Assembly 72106 na HG02004#2#h2tg000075l unplaced-scaffold na na JBHDRU010000030.1 <> na Primary Assembly 208157 na HG02004#2#h2tg000077l unplaced-scaffold na na JBHDRU010000031.1 <> na Primary Assembly 226127 na HG02004#2#h2tg000082l unplaced-scaffold na na JBHDRU010000032.1 <> na Primary Assembly 455384 na HG02004#2#h2tg000083l unplaced-scaffold na na JBHDRU010000033.1 <> na Primary Assembly 100653 na HG02004#2#h2tg000084l unplaced-scaffold na na JBHDRU010000034.1 <> na Primary Assembly 214266 na HG02004#2#h2tg000088l unplaced-scaffold na na JBHDRU010000035.1 <> na Primary Assembly 50860 na HG02004#2#h2tg000091l unplaced-scaffold na na JBHDRU010000036.1 <> na Primary Assembly 96028 na HG02004#2#h2tg000093l unplaced-scaffold na na JBHDRU010000037.1 <> na Primary Assembly 57424 na HG02004#2#h2tg000097l unplaced-scaffold na na JBHDRU010000038.1 <> na Primary Assembly 85233 na HG02004#2#h2tg000102l unplaced-scaffold na na JBHDRU010000039.1 <> na Primary Assembly 52845 na HG02004#2#h2tg000105l unplaced-scaffold na na JBHDRU010000040.1 <> na Primary Assembly 50901 na HG02004#2#h2tg000113l unplaced-scaffold na na JBHDRU010000041.1 <> na Primary Assembly 64818 na HG02004#2#h2tg000118l unplaced-scaffold na na JBHDRU010000042.1 <> na Primary Assembly 57974 na HG02004#2#h2tg000005l unplaced-scaffold na na JBHDRU010000044.1 <> na Primary Assembly 60054875 na HG02004#2#h2tg000008l unplaced-scaffold na na JBHDRU010000046.1 <> na Primary Assembly 92318662 na HG02004#2#h2tg000009l unplaced-scaffold na na JBHDRU010000047.1 <> na Primary Assembly 90739076 na HG02004#2#h2tg000011l unplaced-scaffold na na JBHDRU010000048.1 <> na Primary Assembly 142596529 na HG02004#2#h2tg000013l unplaced-scaffold na na JBHDRU010000049.1 <> na Primary Assembly 40142707 na HG02004#2#h2tg000016l unplaced-scaffold na na JBHDRU010000051.1 <> na Primary Assembly 89827869 na HG02004#2#h2tg000023l unplaced-scaffold na na JBHDRU010000054.1 <> na Primary Assembly 59329155 na HG02004#2#h2tg000024l unplaced-scaffold na na JBHDRU010000055.1 <> na Primary Assembly 92459452 na HG02004#2#h2tg000027l unplaced-scaffold na na JBHDRU010000056.1 <> na Primary Assembly 4776205 na HG02004#2#h2tg000029l unplaced-scaffold na na JBHDRU010000057.1 <> na Primary Assembly 65089387 na HG02004#2#h2tg000031l unplaced-scaffold na na JBHDRU010000058.1 <> na Primary Assembly 4469126 na HG02004#2#h2tg000032l unplaced-scaffold na na JBHDRU010000059.1 <> na Primary Assembly 1133843 na HG02004#2#h2tg000033l unplaced-scaffold na na JBHDRU010000060.1 <> na Primary Assembly 19204260 na HG02004#2#h2tg000034l unplaced-scaffold na na JBHDRU010000061.1 <> na Primary Assembly 5042684 na HG02004#2#h2tg000038l unplaced-scaffold na na JBHDRU010000062.1 <> na Primary Assembly 310592 na HG02004#2#h2tg000040l unplaced-scaffold na na JBHDRU010000063.1 <> na Primary Assembly 209033 na HG02004#2#h2tg000041l unplaced-scaffold na na JBHDRU010000064.1 <> na Primary Assembly 2368016 na HG02004#2#h2tg000043l unplaced-scaffold na na JBHDRU010000065.1 <> na Primary Assembly 1685895 na HG02004#2#h2tg000045l unplaced-scaffold na na JBHDRU010000066.1 <> na Primary Assembly 2197669 na HG02004#2#h2tg000047l unplaced-scaffold na na JBHDRU010000067.1 <> na Primary Assembly 112824 na HG02004#2#h2tg000052l unplaced-scaffold na na JBHDRU010000068.1 <> na Primary Assembly 251691 na HG02004#2#h2tg000053l unplaced-scaffold na na JBHDRU010000069.1 <> na Primary Assembly 239150 na HG02004#2#h2tg000054l unplaced-scaffold na na JBHDRU010000070.1 <> na Primary Assembly 232825 na HG02004#2#h2tg000057l unplaced-scaffold na na JBHDRU010000071.1 <> na Primary Assembly 761702 na HG02004#2#h2tg000059l unplaced-scaffold na na JBHDRU010000072.1 <> na Primary Assembly 141218 na HG02004#2#h2tg000061l unplaced-scaffold na na JBHDRU010000073.1 <> na Primary Assembly 272316 na HG02004#2#h2tg000062l unplaced-scaffold na na JBHDRU010000074.1 <> na Primary Assembly 692777 na HG02004#2#h2tg000064l unplaced-scaffold na na JBHDRU010000075.1 <> na Primary Assembly 72810 na HG02004#2#h2tg000065l unplaced-scaffold na na JBHDRU010000076.1 <> na Primary Assembly 309335 na HG02004#2#h2tg000066l unplaced-scaffold na na JBHDRU010000077.1 <> na Primary Assembly 69523 na HG02004#2#h2tg000067l unplaced-scaffold na na JBHDRU010000078.1 <> na Primary Assembly 114920 na HG02004#2#h2tg000068l unplaced-scaffold na na JBHDRU010000079.1 <> na Primary Assembly 151751 na HG02004#2#h2tg000069l unplaced-scaffold na na JBHDRU010000080.1 <> na Primary Assembly 177386 na HG02004#2#h2tg000070l unplaced-scaffold na na JBHDRU010000081.1 <> na Primary Assembly 219389 na HG02004#2#h2tg000071l unplaced-scaffold na na JBHDRU010000082.1 <> na Primary Assembly 64106 na HG02004#2#h2tg000074l unplaced-scaffold na na JBHDRU010000083.1 <> na Primary Assembly 115987 na HG02004#2#h2tg000076l unplaced-scaffold na na JBHDRU010000084.1 <> na Primary Assembly 93392 na HG02004#2#h2tg000079l unplaced-scaffold na na JBHDRU010000085.1 <> na Primary Assembly 145073 na HG02004#2#h2tg000080l unplaced-scaffold na na JBHDRU010000086.1 <> na Primary Assembly 463499 na HG02004#2#h2tg000081l unplaced-scaffold na na JBHDRU010000087.1 <> na Primary Assembly 98712 na HG02004#2#h2tg000085l unplaced-scaffold na na JBHDRU010000088.1 <> na Primary Assembly 265957 na HG02004#2#h2tg000087l unplaced-scaffold na na JBHDRU010000089.1 <> na Primary Assembly 64249 na HG02004#2#h2tg000090l unplaced-scaffold na na JBHDRU010000090.1 <> na Primary Assembly 150878 na HG02004#2#h2tg000092l unplaced-scaffold na na JBHDRU010000091.1 <> na Primary Assembly 58749 na HG02004#2#h2tg000094l unplaced-scaffold na na JBHDRU010000092.1 <> na Primary Assembly 63304 na HG02004#2#h2tg000095l unplaced-scaffold na na JBHDRU010000093.1 <> na Primary Assembly 102194 na HG02004#2#h2tg000099l unplaced-scaffold na na JBHDRU010000094.1 <> na Primary Assembly 65425 na HG02004#2#h2tg000103l unplaced-scaffold na na JBHDRU010000095.1 <> na Primary Assembly 366196 na HG02004#2#h2tg000107l unplaced-scaffold na na JBHDRU010000096.1 <> na Primary Assembly 50956 na HG02004#2#h2tg000110l unplaced-scaffold na na JBHDRU010000097.1 <> na Primary Assembly 58985 na HG02004#2#h2tg000112l unplaced-scaffold na na JBHDRU010000098.1 <> na Primary Assembly 60063 na HG02004#2#h2tg000114l unplaced-scaffold na na JBHDRU010000099.1 <> na Primary Assembly 56879 na HG02004#2#ptg000001l_rc_rotated unlocalized-scaffold MT Mitochondrion JBHDRU010000100.1 <> na non-nuclear 16563 na