# Assembly name: HG00642_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG00642 # Sex: male # Taxid: 9606 # BioSample: SAMN26267378 # BioProject: PRJNA1156113 # Submitter: UCSC Genomics Institute # Date: 2024-09-19 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHDSU01 # Assembly method: Hifiasm v. 0.19.7 # Expected final version: no # Genome coverage: 65x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042028155.1 # Linked assembly: GCA_042028805.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042028455.1 Primary Assembly ## GCA_042028515.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG00642#2#h2tg000003l assembled-molecule 2 Chromosome CM086618.1 <> na Primary Assembly 242791298 na HG00642#2#h2tg000011l assembled-molecule 3 Chromosome CM086619.1 <> na Primary Assembly 200609459 na HG00642#2#h2tg000024l assembled-molecule 4 Chromosome CM086620.1 <> na Primary Assembly 192816454 na HG00642#2#h2tg000006l assembled-molecule 5 Chromosome CM086621.1 <> na Primary Assembly 183312044 na HG00642#2#h2tg000013l assembled-molecule 6 Chromosome CM086622.1 <> na Primary Assembly 171358100 na HG00642#2#h2tg000017l assembled-molecule 7 Chromosome CM086623.1 <> na Primary Assembly 160444784 na HG00642#2#h2tg000026l assembled-molecule 10 Chromosome CM086624.1 <> na Primary Assembly 134231696 na HG00642#2#h2tg000015l assembled-molecule 11 Chromosome CM086625.1 <> na Primary Assembly 134519020 na HG00642#2#h2tg000007l assembled-molecule 12 Chromosome CM086626.1 <> na Primary Assembly 133629568 na HG00642#2#h2tg000016l assembled-molecule 13 Chromosome CM086627.1 <> na Primary Assembly 107858940 na HG00642#2#h2tg000001l assembled-molecule 14 Chromosome CM086628.1 <> na Primary Assembly 100007777 na HG00642#2#h2tg000014l assembled-molecule 15 Chromosome CM086629.1 <> na Primary Assembly 98750083 na HG00642#2#h2tg000010l assembled-molecule 16 Chromosome CM086630.1 <> na Primary Assembly 91100640 na HG00642#2#h2tg000032l assembled-molecule 19 Chromosome CM086631.1 <> na Primary Assembly 61778322 na HG00642#2#h2tg000022l assembled-molecule 20 Chromosome CM086632.1 <> na Primary Assembly 66487690 na HG00642#2#h2tg000005l unplaced-scaffold na na JBHDSU010000002.1 <> na Primary Assembly 106471748 na HG00642#2#h2tg000008l unplaced-scaffold na na JBHDSU010000004.1 <> na Primary Assembly 100848845 na HG00642#2#h2tg000018l unplaced-scaffold na na JBHDSU010000009.1 <> na Primary Assembly 107891150 na HG00642#2#h2tg000019l unplaced-scaffold na na JBHDSU010000010.1 <> na Primary Assembly 3223386 na HG00642#2#h2tg000020l unplaced-scaffold na na JBHDSU010000011.1 <> na Primary Assembly 61780834 na HG00642#2#h2tg000023l unplaced-scaffold na na JBHDSU010000013.1 <> na Primary Assembly 25348410 na HG00642#2#h2tg000028l unplaced-scaffold na na JBHDSU010000015.1 <> na Primary Assembly 17956628 na HG00642#2#h2tg000029l unplaced-scaffold na na JBHDSU010000016.1 <> na Primary Assembly 39922012 na HG00642#2#h2tg000030l unplaced-scaffold na na JBHDSU010000017.1 <> na Primary Assembly 4112554 na HG00642#2#h2tg000031l unplaced-scaffold na na JBHDSU010000018.1 <> na Primary Assembly 47513312 na HG00642#2#h2tg000034l unplaced-scaffold na na JBHDSU010000019.1 <> na Primary Assembly 164146 na HG00642#2#h2tg000037l unplaced-scaffold na na JBHDSU010000020.1 <> na Primary Assembly 410132 na HG00642#2#h2tg000038l unplaced-scaffold na na JBHDSU010000021.1 <> na Primary Assembly 1686276 na HG00642#2#h2tg000039l unplaced-scaffold na na JBHDSU010000022.1 <> na Primary Assembly 332624 na HG00642#2#h2tg000040l unplaced-scaffold na na JBHDSU010000023.1 <> na Primary Assembly 261093 na HG00642#2#h2tg000042l unplaced-scaffold na na JBHDSU010000024.1 <> na Primary Assembly 202672 na HG00642#2#h2tg000044l unplaced-scaffold na na JBHDSU010000025.1 <> na Primary Assembly 59942 na HG00642#2#h2tg000045l unplaced-scaffold na na JBHDSU010000026.1 <> na Primary Assembly 61003 na HG00642#2#h2tg000053l unplaced-scaffold na na JBHDSU010000027.1 <> na Primary Assembly 288493 na HG00642#2#h2tg000055l unplaced-scaffold na na JBHDSU010000028.1 <> na Primary Assembly 131333 na HG00642#2#h2tg000063l unplaced-scaffold na na JBHDSU010000029.1 <> na Primary Assembly 116488 na HG00642#2#h2tg000065l unplaced-scaffold na na JBHDSU010000030.1 <> na Primary Assembly 59647 na HG00642#2#h2tg000070l unplaced-scaffold na na JBHDSU010000031.1 <> na Primary Assembly 57274 na HG00642#2#h2tg000074l unplaced-scaffold na na JBHDSU010000032.1 <> na Primary Assembly 63148 na HG00642#2#h2tg000076l unplaced-scaffold na na JBHDSU010000033.1 <> na Primary Assembly 102248 na HG00642#2#h2tg000079l unplaced-scaffold na na JBHDSU010000034.1 <> na Primary Assembly 75835 na HG00642#2#h2tg000082l unplaced-scaffold na na JBHDSU010000035.1 <> na Primary Assembly 133926 na HG00642#2#h2tg000084l unplaced-scaffold na na JBHDSU010000036.1 <> na Primary Assembly 62462 na HG00642#2#h2tg000090l unplaced-scaffold na na JBHDSU010000037.1 <> na Primary Assembly 402636 na HG00642#2#h2tg000091l unplaced-scaffold na na JBHDSU010000038.1 <> na Primary Assembly 81973 na HG00642#2#h2tg000101l unplaced-scaffold na na JBHDSU010000039.1 <> na Primary Assembly 51426 na HG00642#2#h2tg000002l unplaced-scaffold na na JBHDSU010000040.1 <> na Primary Assembly 134447207 na HG00642#2#h2tg000004l unplaced-scaffold na na JBHDSU010000042.1 <> na Primary Assembly 107652091 na HG00642#2#h2tg000009l unplaced-scaffold na na JBHDSU010000044.1 <> na Primary Assembly 23159917 na HG00642#2#h2tg000012l unplaced-scaffold na na JBHDSU010000045.1 <> na Primary Assembly 44589197 na HG00642#2#h2tg000021l unplaced-scaffold na na JBHDSU010000049.1 <> na Primary Assembly 47919138 na HG00642#2#h2tg000025l unplaced-scaffold na na JBHDSU010000050.1 <> na Primary Assembly 4859495 na HG00642#2#h2tg000027l unplaced-scaffold na na JBHDSU010000052.1 <> na Primary Assembly 58569237 na HG00642#2#h2tg000033l unplaced-scaffold na na JBHDSU010000054.1 <> na Primary Assembly 4588942 na HG00642#2#h2tg000035l unplaced-scaffold na na JBHDSU010000055.1 <> na Primary Assembly 1881543 na HG00642#2#h2tg000036l unplaced-scaffold na na JBHDSU010000056.1 <> na Primary Assembly 1467519 na HG00642#2#h2tg000041l unplaced-scaffold na na JBHDSU010000057.1 <> na Primary Assembly 1659567 na HG00642#2#h2tg000043l unplaced-scaffold na na JBHDSU010000058.1 <> na Primary Assembly 260386 na HG00642#2#h2tg000047l unplaced-scaffold na na JBHDSU010000059.1 <> na Primary Assembly 210708 na HG00642#2#h2tg000048l unplaced-scaffold na na JBHDSU010000060.1 <> na Primary Assembly 293360 na HG00642#2#h2tg000051l unplaced-scaffold na na JBHDSU010000061.1 <> na Primary Assembly 150920 na HG00642#2#h2tg000056l unplaced-scaffold na na JBHDSU010000062.1 <> na Primary Assembly 197642 na HG00642#2#h2tg000057l unplaced-scaffold na na JBHDSU010000063.1 <> na Primary Assembly 77163 na HG00642#2#h2tg000058l unplaced-scaffold na na JBHDSU010000064.1 <> na Primary Assembly 386760 na HG00642#2#h2tg000060l unplaced-scaffold na na JBHDSU010000065.1 <> na Primary Assembly 186012 na HG00642#2#h2tg000061l unplaced-scaffold na na JBHDSU010000066.1 <> na Primary Assembly 187725 na HG00642#2#h2tg000077l unplaced-scaffold na na JBHDSU010000067.1 <> na Primary Assembly 115175 na HG00642#2#h2tg000080l unplaced-scaffold na na JBHDSU010000068.1 <> na Primary Assembly 89804 na HG00642#2#h2tg000081l unplaced-scaffold na na JBHDSU010000069.1 <> na Primary Assembly 77969 na HG00642#2#h2tg000085l unplaced-scaffold na na JBHDSU010000070.1 <> na Primary Assembly 72824 na HG00642#2#h2tg000088l unplaced-scaffold na na JBHDSU010000071.1 <> na Primary Assembly 154628 na HG00642#2#ptg000001l_rc_rotated unlocalized-scaffold MT Mitochondrion JBHDSU010000072.1 <> na non-nuclear 16564 na