# Assembly name: HG01960_mat_hprc_f2 # Organism name: Homo sapiens (human) # Isolate: HG01960 # Sex: female # Taxid: 9606 # BioSample: SAMN37797102 # BioProject: PRJNA1157256 # Submitter: UCSC Genomics Institute # Date: 2024-09-20 # Assembly type: haploid (maternal haplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBHIHN01 # Assembly method: Hifiasm v. 0.19.9 # Expected final version: no # Genome coverage: 57x # Sequencing technology: PacBio; Oxford Nanopore # GenBank assembly accession: GCA_042037445.1 # Linked assembly: GCA_042037895.1 (paternal haplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_042037615.1 Primary Assembly ## GCA_042037645.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name HG01960#2#h2tg000023l assembled-molecule 5 Chromosome CM088673.1 <> na Primary Assembly 183304547 na HG01960#2#h2tg000019l assembled-molecule 7 Chromosome CM088674.1 <> na Primary Assembly 161521971 na HG01960#2#h2tg000006l assembled-molecule 9 Chromosome CM088675.1 <> na Primary Assembly 135783131 na HG01960#2#h2tg000024l assembled-molecule 11 Chromosome CM088676.1 <> na Primary Assembly 136980546 na HG01960#2#h2tg000025l assembled-molecule 12 Chromosome CM088677.1 <> na Primary Assembly 133600733 na HG01960#2#h2tg000017l assembled-molecule 16 Chromosome CM088678.1 <> na Primary Assembly 91660479 na HG01960#2#h2tg000010l assembled-molecule 18 Chromosome CM088679.1 <> na Primary Assembly 79511359 na HG01960#2#h2tg000008l assembled-molecule 19 Chromosome CM088680.1 <> na Primary Assembly 61164158 na HG01960#2#h2tg000022l assembled-molecule 20 Chromosome CM088681.1 <> na Primary Assembly 66477632 na HG01960#2#h2tg000021l assembled-molecule X Chromosome CM088682.1 <> na Primary Assembly 153261591 na HG01960#2#h2tg000001l unplaced-scaffold na na JBHIHN010000001.1 <> na Primary Assembly 47668356 na HG01960#2#h2tg000003l unplaced-scaffold na na JBHIHN010000002.1 <> na Primary Assembly 247872452 na HG01960#2#h2tg000005l unplaced-scaffold na na JBHIHN010000003.1 <> na Primary Assembly 140178179 na HG01960#2#h2tg000007l unplaced-scaffold na na JBHIHN010000005.1 <> na Primary Assembly 107398916 na HG01960#2#h2tg000009l unplaced-scaffold na na JBHIHN010000007.1 <> na Primary Assembly 147787158 na HG01960#2#h2tg000011l unplaced-scaffold na na JBHIHN010000009.1 <> na Primary Assembly 143949580 na HG01960#2#h2tg000014l unplaced-scaffold na na JBHIHN010000010.1 <> na Primary Assembly 90209525 na HG01960#2#h2tg000015l unplaced-scaffold na na JBHIHN010000011.1 <> na Primary Assembly 60997145 na HG01960#2#h2tg000016l unplaced-scaffold na na JBHIHN010000012.1 <> na Primary Assembly 100362324 na HG01960#2#h2tg000020l unplaced-scaffold na na JBHIHN010000014.1 <> na Primary Assembly 25926274 na HG01960#2#h2tg000027l unplaced-scaffold na na JBHIHN010000017.1 <> na Primary Assembly 102283613 na HG01960#2#h2tg000028l unplaced-scaffold na na JBHIHN010000018.1 <> na Primary Assembly 38810622 na HG01960#2#h2tg000034l unplaced-scaffold na na JBHIHN010000019.1 <> na Primary Assembly 2410198 na HG01960#2#h2tg000036l unplaced-scaffold na na JBHIHN010000020.1 <> na Primary Assembly 2852142 na HG01960#2#h2tg000039l unplaced-scaffold na na JBHIHN010000021.1 <> na Primary Assembly 136331 na HG01960#2#h2tg000040l unplaced-scaffold na na JBHIHN010000022.1 <> na Primary Assembly 2315710 na HG01960#2#h2tg000042l unplaced-scaffold na na JBHIHN010000023.1 <> na Primary Assembly 144854 na HG01960#2#h2tg000046l unplaced-scaffold na na JBHIHN010000024.1 <> na Primary Assembly 465273 na HG01960#2#h2tg000048l unplaced-scaffold na na JBHIHN010000025.1 <> na Primary Assembly 426536 na HG01960#2#h2tg000051l unplaced-scaffold na na JBHIHN010000026.1 <> na Primary Assembly 83413 na HG01960#2#h2tg000057l unplaced-scaffold na na JBHIHN010000027.1 <> na Primary Assembly 245321 na HG01960#2#h2tg000062l unplaced-scaffold na na JBHIHN010000028.1 <> na Primary Assembly 276722 na HG01960#2#h2tg000064l unplaced-scaffold na na JBHIHN010000029.1 <> na Primary Assembly 78168 na HG01960#2#h2tg000066l unplaced-scaffold na na JBHIHN010000030.1 <> na Primary Assembly 63484 na HG01960#2#h2tg000067l unplaced-scaffold na na JBHIHN010000031.1 <> na Primary Assembly 55982 na HG01960#2#h2tg000070l unplaced-scaffold na na JBHIHN010000032.1 <> na Primary Assembly 112391 na HG01960#2#h2tg000071l unplaced-scaffold na na JBHIHN010000033.1 <> na Primary Assembly 125758 na HG01960#2#h2tg000073l unplaced-scaffold na na JBHIHN010000034.1 <> na Primary Assembly 62225 na HG01960#2#h2tg000074l unplaced-scaffold na na JBHIHN010000035.1 <> na Primary Assembly 75553 na HG01960#2#h2tg000077l unplaced-scaffold na na JBHIHN010000036.1 <> na Primary Assembly 84493 na HG01960#2#h2tg000079l unplaced-scaffold na na JBHIHN010000037.1 <> na Primary Assembly 75033 na HG01960#2#h2tg000080l unplaced-scaffold na na JBHIHN010000038.1 <> na Primary Assembly 52322 na HG01960#2#h2tg000083l unplaced-scaffold na na JBHIHN010000039.1 <> na Primary Assembly 168718 na HG01960#2#h2tg000086l unplaced-scaffold na na JBHIHN010000040.1 <> na Primary Assembly 71213 na HG01960#2#h2tg000089l unplaced-scaffold na na JBHIHN010000041.1 <> na Primary Assembly 50372 na HG01960#2#h2tg000091l unplaced-scaffold na na JBHIHN010000042.1 <> na Primary Assembly 65745 na HG01960#2#h2tg000092l unplaced-scaffold na na JBHIHN010000043.1 <> na Primary Assembly 60178 na HG01960#2#h2tg000098l unplaced-scaffold na na JBHIHN010000044.1 <> na Primary Assembly 155245 na HG01960#2#h2tg000002l unplaced-scaffold na na JBHIHN010000045.1 <> na Primary Assembly 88905529 na HG01960#2#h2tg000004l unplaced-scaffold na na JBHIHN010000046.1 <> na Primary Assembly 92053647 na HG01960#2#h2tg000012l unplaced-scaffold na na JBHIHN010000047.1 <> na Primary Assembly 51183211 na HG01960#2#h2tg000013l unplaced-scaffold na na JBHIHN010000048.1 <> na Primary Assembly 134740066 na HG01960#2#h2tg000018l unplaced-scaffold na na JBHIHN010000049.1 <> na Primary Assembly 111587329 na HG01960#2#h2tg000026l unplaced-scaffold na na JBHIHN010000054.1 <> na Primary Assembly 5577203 na HG01960#2#h2tg000029l unplaced-scaffold na na JBHIHN010000055.1 <> na Primary Assembly 3895628 na HG01960#2#h2tg000030l unplaced-scaffold na na JBHIHN010000056.1 <> na Primary Assembly 58950900 na HG01960#2#h2tg000031l unplaced-scaffold na na JBHIHN010000057.1 <> na Primary Assembly 4797846 na HG01960#2#h2tg000032l unplaced-scaffold na na JBHIHN010000058.1 <> na Primary Assembly 185840 na HG01960#2#h2tg000033l unplaced-scaffold na na JBHIHN010000059.1 <> na Primary Assembly 2306183 na HG01960#2#h2tg000035l unplaced-scaffold na na JBHIHN010000060.1 <> na Primary Assembly 71692 na HG01960#2#h2tg000037l unplaced-scaffold na na JBHIHN010000061.1 <> na Primary Assembly 119983 na HG01960#2#h2tg000038l unplaced-scaffold na na JBHIHN010000062.1 <> na Primary Assembly 2814502 na HG01960#2#h2tg000041l unplaced-scaffold na na JBHIHN010000063.1 <> na Primary Assembly 58701 na HG01960#2#h2tg000043l unplaced-scaffold na na JBHIHN010000064.1 <> na Primary Assembly 150397 na HG01960#2#h2tg000045l unplaced-scaffold na na JBHIHN010000065.1 <> na Primary Assembly 63772 na HG01960#2#h2tg000047l unplaced-scaffold na na JBHIHN010000066.1 <> na Primary Assembly 144061 na HG01960#2#h2tg000049l unplaced-scaffold na na JBHIHN010000067.1 <> na Primary Assembly 167903 na HG01960#2#h2tg000050l unplaced-scaffold na na JBHIHN010000068.1 <> na Primary Assembly 58797 na HG01960#2#h2tg000052l unplaced-scaffold na na JBHIHN010000069.1 <> na Primary Assembly 96877 na HG01960#2#h2tg000054l unplaced-scaffold na na JBHIHN010000070.1 <> na Primary Assembly 391934 na HG01960#2#h2tg000055l unplaced-scaffold na na JBHIHN010000071.1 <> na Primary Assembly 146319 na HG01960#2#h2tg000056l unplaced-scaffold na na JBHIHN010000072.1 <> na Primary Assembly 517584 na HG01960#2#h2tg000058l unplaced-scaffold na na JBHIHN010000073.1 <> na Primary Assembly 52569 na HG01960#2#h2tg000061l unplaced-scaffold na na JBHIHN010000074.1 <> na Primary Assembly 158724 na HG01960#2#h2tg000065l unplaced-scaffold na na JBHIHN010000075.1 <> na Primary Assembly 88776 na HG01960#2#h2tg000069l unplaced-scaffold na na JBHIHN010000076.1 <> na Primary Assembly 51509 na HG01960#2#h2tg000072l unplaced-scaffold na na JBHIHN010000077.1 <> na Primary Assembly 96618 na HG01960#2#h2tg000076l unplaced-scaffold na na JBHIHN010000078.1 <> na Primary Assembly 115797 na HG01960#2#h2tg000082l unplaced-scaffold na na JBHIHN010000079.1 <> na Primary Assembly 145265 na HG01960#2#h2tg000084l unplaced-scaffold na na JBHIHN010000080.1 <> na Primary Assembly 87614 na HG01960#2#h2tg000087l unplaced-scaffold na na JBHIHN010000081.1 <> na Primary Assembly 72450 na HG01960#2#h2tg000090l unplaced-scaffold na na JBHIHN010000082.1 <> na Primary Assembly 79882 na HG01960#2#h2tg000093l unplaced-scaffold na na JBHIHN010000083.1 <> na Primary Assembly 59788 na HG01960#2#h2tg000095l unplaced-scaffold na na JBHIHN010000084.1 <> na Primary Assembly 103991 na HG01960#2#atg000003l_rotated unlocalized-scaffold MT Mitochondrion JBHIHN010000085.1 <> na non-nuclear 16567 na