# Assembly name: Lyon_Normot_Rat_Genome # Organism name: Rattus norvegicus (Norway rat) # Isolate: RGD_10755354 # Sex: male # Taxid: 10116 # BioSample: SAMN44819359 # BioProject: PRJNA1188056 # Submitter: University of Kentucky # Date: 2024-12-04 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBJKTU01 # Assembly method: HiFiasm v. 0.19.9-r616 # Expected final version: yes # Genome coverage: 35.0x # Sequencing technology: Illumina NovaSeq; PacBio Sequel; HiC # GenBank assembly accession: GCA_045687995.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_045688645.1 Primary Assembly ## GCA_045688665.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM098956.1 <> na Primary Assembly 274729612 na chr2 assembled-molecule 2 Chromosome CM098957.1 <> na Primary Assembly 251758028 na chr3 assembled-molecule 3 Chromosome CM098958.1 <> na Primary Assembly 194879633 na chr4 assembled-molecule 4 Chromosome CM098959.1 <> na Primary Assembly 184398237 na chr5 assembled-molecule 5 Chromosome CM098960.1 <> na Primary Assembly 173753034 na chr6 assembled-molecule 6 Chromosome CM098961.1 <> na Primary Assembly 148142696 na chr7 assembled-molecule 7 Chromosome CM098962.1 <> na Primary Assembly 139830128 na chr8 assembled-molecule 8 Chromosome CM098963.1 <> na Primary Assembly 135700874 na chr9 assembled-molecule 9 Chromosome CM098964.1 <> na Primary Assembly 121282136 na chr10 assembled-molecule 10 Chromosome CM098965.1 <> na Primary Assembly 111592323 na chr11 assembled-molecule 11 Chromosome CM098966.1 <> na Primary Assembly 99805933 na chr12 assembled-molecule 12 Chromosome CM098967.1 <> na Primary Assembly 53527670 na chr13 assembled-molecule 13 Chromosome CM098968.1 <> na Primary Assembly 108926867 na chr14 assembled-molecule 14 Chromosome CM098969.1 <> na Primary Assembly 108199291 na chr15 assembled-molecule 15 Chromosome CM098970.1 <> na Primary Assembly 106367262 na chr16 assembled-molecule 16 Chromosome CM098971.1 <> na Primary Assembly 92720020 na chr17 assembled-molecule 17 Chromosome CM098972.1 <> na Primary Assembly 93702030 na chr18 assembled-molecule 18 Chromosome CM098973.1 <> na Primary Assembly 85764253 na chr19 assembled-molecule 19 Chromosome CM098974.1 <> na Primary Assembly 66300728 na chr20 assembled-molecule 20 Chromosome CM098975.1 <> na Primary Assembly 57089584 na chrX assembled-molecule X Chromosome CM098976.1 <> na Primary Assembly 156356337 na chrY assembled-molecule Y Chromosome CM098977.1 <> na Primary Assembly 72733628 na contig2 unplaced-scaffold na na JBJKTU010000024.1 <> na Primary Assembly 13466 na contig3 unplaced-scaffold na na JBJKTU010000025.1 <> na Primary Assembly 98462 na contig4 unplaced-scaffold na na JBJKTU010000026.1 <> na Primary Assembly 28824 na contig6 unplaced-scaffold na na JBJKTU010000027.1 <> na Primary Assembly 39906 na contig7 unplaced-scaffold na na JBJKTU010000028.1 <> na Primary Assembly 13417 na contig9 unplaced-scaffold na na JBJKTU010000029.1 <> na Primary Assembly 35924 na contig11 unplaced-scaffold na na JBJKTU010000030.1 <> na Primary Assembly 27085 na contig12 unplaced-scaffold na na JBJKTU010000031.1 <> na Primary Assembly 46294 na contig13 unplaced-scaffold na na JBJKTU010000032.1 <> na Primary Assembly 38535 na contig14 unplaced-scaffold na na JBJKTU010000033.1 <> na Primary Assembly 64758 na contig15 unplaced-scaffold na na JBJKTU010000034.1 <> na Primary Assembly 12324 na contig16 unplaced-scaffold na na JBJKTU010000035.1 <> na Primary Assembly 92251 na contig18 unplaced-scaffold na na JBJKTU010000036.1 <> na Primary Assembly 22339 na contig22 unplaced-scaffold na na JBJKTU010000037.1 <> na Primary Assembly 50944 na contig23 unplaced-scaffold na na JBJKTU010000038.1 <> na Primary Assembly 117782 na contig28 unplaced-scaffold na na JBJKTU010000039.1 <> na Primary Assembly 122634 na contig29 unplaced-scaffold na na JBJKTU010000040.1 <> na Primary Assembly 12455 na contig31 unplaced-scaffold na na JBJKTU010000041.1 <> na Primary Assembly 72010 na contig32 unplaced-scaffold na na JBJKTU010000042.1 <> na Primary Assembly 44191 na contig33 unplaced-scaffold na na JBJKTU010000043.1 <> na Primary Assembly 44886 na contig35 unplaced-scaffold na na JBJKTU010000044.1 <> na Primary Assembly 263178 na contig36 unplaced-scaffold na na JBJKTU010000045.1 <> na Primary Assembly 34440 na contig38 unplaced-scaffold na na JBJKTU010000046.1 <> na Primary Assembly 33989 na contig42 unplaced-scaffold na na JBJKTU010000047.1 <> na Primary Assembly 16812 na contig43 unplaced-scaffold na na JBJKTU010000048.1 <> na Primary Assembly 33092 na contig44 unplaced-scaffold na na JBJKTU010000049.1 <> na Primary Assembly 28890 na contig45 unplaced-scaffold na na JBJKTU010000050.1 <> na Primary Assembly 27865 na contig47 unplaced-scaffold na na JBJKTU010000051.1 <> na Primary Assembly 23215 na contig48 unplaced-scaffold na na JBJKTU010000052.1 <> na Primary Assembly 71362 na contig49 unplaced-scaffold na na JBJKTU010000053.1 <> na Primary Assembly 44608 na contig50 unplaced-scaffold na na JBJKTU010000054.1 <> na Primary Assembly 16808 na contig51 unplaced-scaffold na na JBJKTU010000055.1 <> na Primary Assembly 121610 na contig53 unplaced-scaffold na na JBJKTU010000056.1 <> na Primary Assembly 120135 na contig54 unplaced-scaffold na na JBJKTU010000057.1 <> na Primary Assembly 52400 na contig56 unplaced-scaffold na na JBJKTU010000058.1 <> na Primary Assembly 25347 na contig57 unplaced-scaffold na na JBJKTU010000059.1 <> na Primary Assembly 108801 na contig58 unplaced-scaffold na na JBJKTU010000060.1 <> na Primary Assembly 25099 na contig59 unplaced-scaffold na na JBJKTU010000061.1 <> na Primary Assembly 189498 na contig62 unplaced-scaffold na na JBJKTU010000062.1 <> na Primary Assembly 33712 na contig63 unplaced-scaffold na na JBJKTU010000063.1 <> na Primary Assembly 25486 na contig64 unplaced-scaffold na na JBJKTU010000064.1 <> na Primary Assembly 42449 na contig66 unplaced-scaffold na na JBJKTU010000065.1 <> na Primary Assembly 86106 na contig67 unplaced-scaffold na na JBJKTU010000066.1 <> na Primary Assembly 10608 na contig68 unplaced-scaffold na na JBJKTU010000067.1 <> na Primary Assembly 30675 na contig69 unplaced-scaffold na na JBJKTU010000068.1 <> na Primary Assembly 34782 na contig73 unplaced-scaffold na na JBJKTU010000069.1 <> na Primary Assembly 128435 na contig74 unplaced-scaffold na na JBJKTU010000070.1 <> na Primary Assembly 65561 na contig75 unplaced-scaffold na na JBJKTU010000071.1 <> na Primary Assembly 63989 na contig76 unplaced-scaffold na na JBJKTU010000072.1 <> na Primary Assembly 175214 na contig79 unplaced-scaffold na na JBJKTU010000073.1 <> na Primary Assembly 30376 na contig80 unplaced-scaffold na na JBJKTU010000074.1 <> na Primary Assembly 25235 na contig82 unplaced-scaffold na na JBJKTU010000075.1 <> na Primary Assembly 47480 na contig83 unplaced-scaffold na na JBJKTU010000076.1 <> na Primary Assembly 43788 na contig84 unplaced-scaffold na na JBJKTU010000077.1 <> na Primary Assembly 31575 na contig85 unplaced-scaffold na na JBJKTU010000078.1 <> na Primary Assembly 15814 na contig87 unplaced-scaffold na na JBJKTU010000079.1 <> na Primary Assembly 109112 na contig88 unplaced-scaffold na na JBJKTU010000080.1 <> na Primary Assembly 187066 na contig91 unplaced-scaffold na na JBJKTU010000081.1 <> na Primary Assembly 26752 na contig92 unplaced-scaffold na na JBJKTU010000082.1 <> na Primary Assembly 41206 na contig95 unplaced-scaffold na na JBJKTU010000083.1 <> na Primary Assembly 195893 na contig97 unplaced-scaffold na na JBJKTU010000084.1 <> na Primary Assembly 11405 na contig98 unplaced-scaffold na na JBJKTU010000085.1 <> na Primary Assembly 29578 na contig99 unplaced-scaffold na na JBJKTU010000086.1 <> na Primary Assembly 29268 na contig101 unplaced-scaffold na na JBJKTU010000087.1 <> na Primary Assembly 68303 na contig102 unplaced-scaffold na na JBJKTU010000088.1 <> na Primary Assembly 37100 na contig103 unplaced-scaffold na na JBJKTU010000089.1 <> na Primary Assembly 19280 na contig105 unplaced-scaffold na na JBJKTU010000090.1 <> na Primary Assembly 166950 na contig106 unplaced-scaffold na na JBJKTU010000091.1 <> na Primary Assembly 111547 na contig108 unplaced-scaffold na na JBJKTU010000092.1 <> na Primary Assembly 10612 na contig112 unplaced-scaffold na na JBJKTU010000093.1 <> na Primary Assembly 17472 na contig113 unplaced-scaffold na na JBJKTU010000094.1 <> na Primary Assembly 43885 na contig114 unplaced-scaffold na na JBJKTU010000095.1 <> na Primary Assembly 91994 na contig115 unplaced-scaffold na na JBJKTU010000096.1 <> na Primary Assembly 54658 na contig116 unplaced-scaffold na na JBJKTU010000097.1 <> na Primary Assembly 72211 na contig117 unplaced-scaffold na na JBJKTU010000098.1 <> na Primary Assembly 38206 na contig120 unplaced-scaffold na na JBJKTU010000099.1 <> na Primary Assembly 195359 na contig122 unplaced-scaffold na na JBJKTU010000100.1 <> na Primary Assembly 33584 na contig124 unplaced-scaffold na na JBJKTU010000101.1 <> na Primary Assembly 32507 na contig125 unplaced-scaffold na na JBJKTU010000102.1 <> na Primary Assembly 13822 na contig127 unplaced-scaffold na na JBJKTU010000103.1 <> na Primary Assembly 125956 na contig129 unplaced-scaffold na na JBJKTU010000104.1 <> na Primary Assembly 23580 na contig130 unplaced-scaffold na na JBJKTU010000105.1 <> na Primary Assembly 31245 na contig131 unplaced-scaffold na na JBJKTU010000106.1 <> na Primary Assembly 48723 na contig132 unplaced-scaffold na na JBJKTU010000107.1 <> na Primary Assembly 71355 na contig134 unplaced-scaffold na na JBJKTU010000108.1 <> na Primary Assembly 26559 na contig140 unplaced-scaffold na na JBJKTU010000109.1 <> na Primary Assembly 136175 na contig141 unplaced-scaffold na na JBJKTU010000110.1 <> na Primary Assembly 48405 na contig142 unplaced-scaffold na na JBJKTU010000111.1 <> na Primary Assembly 107087 na contig143 unplaced-scaffold na na JBJKTU010000112.1 <> na Primary Assembly 27519 na contig146 unplaced-scaffold na na JBJKTU010000113.1 <> na Primary Assembly 60796 na contig147 unplaced-scaffold na na JBJKTU010000114.1 <> na Primary Assembly 13553 na contig148 unplaced-scaffold na na JBJKTU010000115.1 <> na Primary Assembly 46867 na contig149 unplaced-scaffold na na JBJKTU010000116.1 <> na Primary Assembly 47857 na contig152 unplaced-scaffold na na JBJKTU010000117.1 <> na Primary Assembly 424408 na contig154 unplaced-scaffold na na JBJKTU010000118.1 <> na Primary Assembly 35971 na contig155 unplaced-scaffold na na JBJKTU010000119.1 <> na Primary Assembly 13885 na contig156 unplaced-scaffold na na JBJKTU010000120.1 <> na Primary Assembly 104383 na contig159 unplaced-scaffold na na JBJKTU010000121.1 <> na Primary Assembly 26158 na contig161 unplaced-scaffold na na JBJKTU010000122.1 <> na Primary Assembly 45538 na contig162 unplaced-scaffold na na JBJKTU010000123.1 <> na Primary Assembly 13327 na contig163 unplaced-scaffold na na JBJKTU010000124.1 <> na Primary Assembly 94798 na contig164 unplaced-scaffold na na JBJKTU010000125.1 <> na Primary Assembly 24388 na contig166 unplaced-scaffold na na JBJKTU010000126.1 <> na Primary Assembly 220916 na contig167 unplaced-scaffold na na JBJKTU010000127.1 <> na Primary Assembly 29059 na contig168 unplaced-scaffold na na JBJKTU010000128.1 <> na Primary Assembly 50012 na contig169 unplaced-scaffold na na JBJKTU010000129.1 <> na Primary Assembly 143694 na contig170 unplaced-scaffold na na JBJKTU010000130.1 <> na Primary Assembly 41504 na contig171 unplaced-scaffold na na JBJKTU010000131.1 <> na Primary Assembly 18633 na contig173 unplaced-scaffold na na JBJKTU010000132.1 <> na Primary Assembly 26161 na contig175 unplaced-scaffold na na JBJKTU010000133.1 <> na Primary Assembly 29922 na contig176 unplaced-scaffold na na JBJKTU010000134.1 <> na Primary Assembly 237082 na contig179 unplaced-scaffold na na JBJKTU010000135.1 <> na Primary Assembly 19425 na contig180 unplaced-scaffold na na JBJKTU010000136.1 <> na Primary Assembly 73149 na contig181 unplaced-scaffold na na JBJKTU010000137.1 <> na Primary Assembly 40615 na contig182 unplaced-scaffold na na JBJKTU010000138.1 <> na Primary Assembly 117086 na contig184 unplaced-scaffold na na JBJKTU010000139.1 <> na Primary Assembly 46283 na contig186 unplaced-scaffold na na JBJKTU010000140.1 <> na Primary Assembly 197944 na contig188 unplaced-scaffold na na JBJKTU010000141.1 <> na Primary Assembly 195377 na contig189 unplaced-scaffold na na JBJKTU010000142.1 <> na Primary Assembly 40900 na contig190 unplaced-scaffold na na JBJKTU010000143.1 <> na Primary Assembly 72112 na contig191 unplaced-scaffold na na JBJKTU010000144.1 <> na Primary Assembly 29544 na contig192 unplaced-scaffold na na JBJKTU010000145.1 <> na Primary Assembly 11192 na contig193 unplaced-scaffold na na JBJKTU010000146.1 <> na Primary Assembly 90697 na contig196 unplaced-scaffold na na JBJKTU010000147.1 <> na Primary Assembly 75811 na contig198 unplaced-scaffold na na JBJKTU010000148.1 <> na Primary Assembly 153520 na contig199 unplaced-scaffold na na JBJKTU010000149.1 <> na Primary Assembly 36564 na chrMT assembled-molecule MT Mitochondrion CM099024.1 <> na non-nuclear 16308 na