# Assembly name: Dahl_SR_JrHsd # Organism name: Rattus norvegicus (Norway rat) # Isolate: RGD_1582184 # Sex: male # Taxid: 10116 # BioSample: SAMN44524385 # BioProject: PRJNA1180592 # Submitter: University of Kentucky # Date: 2024-12-04 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBJKTS01 # Assembly method: HiFiasm v. 0.19.9-r616 # Expected final version: yes # Genome coverage: 35.0x # Sequencing technology: PacBio Sequel; Illumina NovaSeq; HiC # GenBank assembly accession: GCA_045688005.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_045688655.1 Primary Assembly ## GCA_045688675.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM099000.1 <> na Primary Assembly 269784047 na chr2 assembled-molecule 2 Chromosome CM099001.1 <> na Primary Assembly 251634592 na chr3 assembled-molecule 3 Chromosome CM099002.1 <> na Primary Assembly 188018555 na chr4 assembled-molecule 4 Chromosome CM099003.1 <> na Primary Assembly 186754243 na chr5 assembled-molecule 5 Chromosome CM099004.1 <> na Primary Assembly 171830470 na chr6 assembled-molecule 6 Chromosome CM099005.1 <> na Primary Assembly 149055883 na chr7 assembled-molecule 7 Chromosome CM099006.1 <> na Primary Assembly 138878041 na chr8 assembled-molecule 8 Chromosome CM099007.1 <> na Primary Assembly 133598462 na chr9 assembled-molecule 9 Chromosome CM099008.1 <> na Primary Assembly 125443507 na chr10 assembled-molecule 10 Chromosome CM099009.1 <> na Primary Assembly 110864534 na chr11 assembled-molecule 11 Chromosome CM099010.1 <> na Primary Assembly 101614819 na chr12 assembled-molecule 12 Chromosome CM099011.1 <> na Primary Assembly 53598670 na chr13 assembled-molecule 13 Chromosome CM099012.1 <> na Primary Assembly 108711421 na chr14 assembled-molecule 14 Chromosome CM099013.1 <> na Primary Assembly 109546965 na chr15 assembled-molecule 15 Chromosome CM099014.1 <> na Primary Assembly 107282685 na chr16 assembled-molecule 16 Chromosome CM099015.1 <> na Primary Assembly 91357278 na chr17 assembled-molecule 17 Chromosome CM099016.1 <> na Primary Assembly 94907451 na chr18 assembled-molecule 18 Chromosome CM099017.1 <> na Primary Assembly 85487055 na chr19 assembled-molecule 19 Chromosome CM099018.1 <> na Primary Assembly 68090033 na chr20 assembled-molecule 20 Chromosome CM099019.1 <> na Primary Assembly 56035424 na chrX assembled-molecule X Chromosome CM099020.1 <> na Primary Assembly 155652019 na chrY assembled-molecule Y Chromosome CM099021.1 <> na Primary Assembly 72092190 na contig1 unplaced-scaffold na na JBJKTS010000024.1 <> na Primary Assembly 41779 na contig2 unplaced-scaffold na na JBJKTS010000025.1 <> na Primary Assembly 18397 na contig6 unplaced-scaffold na na JBJKTS010000026.1 <> na Primary Assembly 47160 na contig8 unplaced-scaffold na na JBJKTS010000027.1 <> na Primary Assembly 116471 na contig13 unplaced-scaffold na na JBJKTS010000028.1 <> na Primary Assembly 237218 na contig14 unplaced-scaffold na na JBJKTS010000029.1 <> na Primary Assembly 39507 na contig15 unplaced-scaffold na na JBJKTS010000030.1 <> na Primary Assembly 79915 na contig16 unplaced-scaffold na na JBJKTS010000031.1 <> na Primary Assembly 13650 na contig20 unplaced-scaffold na na JBJKTS010000032.1 <> na Primary Assembly 22503 na contig21 unplaced-scaffold na na JBJKTS010000033.1 <> na Primary Assembly 177438 na contig27 unplaced-scaffold na na JBJKTS010000034.1 <> na Primary Assembly 121711 na contig34 unplaced-scaffold na na JBJKTS010000035.1 <> na Primary Assembly 36579 na contig35 unplaced-scaffold na na JBJKTS010000036.1 <> na Primary Assembly 11860 na contig37 unplaced-scaffold na na JBJKTS010000037.1 <> na Primary Assembly 48243 na contig38 unplaced-scaffold na na JBJKTS010000038.1 <> na Primary Assembly 29486 na contig39 unplaced-scaffold na na JBJKTS010000039.1 <> na Primary Assembly 12371 na contig40 unplaced-scaffold na na JBJKTS010000040.1 <> na Primary Assembly 47781 na contig43 unplaced-scaffold na na JBJKTS010000041.1 <> na Primary Assembly 66684 na contig44 unplaced-scaffold na na JBJKTS010000042.1 <> na Primary Assembly 41811 na contig45 unplaced-scaffold na na JBJKTS010000043.1 <> na Primary Assembly 18383 na contig47 unplaced-scaffold na na JBJKTS010000044.1 <> na Primary Assembly 19400 na contig48 unplaced-scaffold na na JBJKTS010000045.1 <> na Primary Assembly 27196 na contig51 unplaced-scaffold na na JBJKTS010000046.1 <> na Primary Assembly 414102 na contig54 unplaced-scaffold na na JBJKTS010000047.1 <> na Primary Assembly 233306 na contig56 unplaced-scaffold na na JBJKTS010000048.1 <> na Primary Assembly 34339 na contig58 unplaced-scaffold na na JBJKTS010000049.1 <> na Primary Assembly 122843 na contig64 unplaced-scaffold na na JBJKTS010000050.1 <> na Primary Assembly 33763 na contig65 unplaced-scaffold na na JBJKTS010000051.1 <> na Primary Assembly 19825 na contig66 unplaced-scaffold na na JBJKTS010000052.1 <> na Primary Assembly 27151 na contig67 unplaced-scaffold na na JBJKTS010000053.1 <> na Primary Assembly 44840 na contig69 unplaced-scaffold na na JBJKTS010000054.1 <> na Primary Assembly 46360 na contig71 unplaced-scaffold na na JBJKTS010000055.1 <> na Primary Assembly 41420 na contig72 unplaced-scaffold na na JBJKTS010000056.1 <> na Primary Assembly 40742 na contig73 unplaced-scaffold na na JBJKTS010000057.1 <> na Primary Assembly 45088 na contig74 unplaced-scaffold na na JBJKTS010000058.1 <> na Primary Assembly 20066 na contig75 unplaced-scaffold na na JBJKTS010000059.1 <> na Primary Assembly 13287 na contig76 unplaced-scaffold na na JBJKTS010000060.1 <> na Primary Assembly 28974 na contig77 unplaced-scaffold na na JBJKTS010000061.1 <> na Primary Assembly 16465 na contig80 unplaced-scaffold na na JBJKTS010000062.1 <> na Primary Assembly 74865 na contig81 unplaced-scaffold na na JBJKTS010000063.1 <> na Primary Assembly 42553 na contig83 unplaced-scaffold na na JBJKTS010000064.1 <> na Primary Assembly 1062894 na contig85 unplaced-scaffold na na JBJKTS010000065.1 <> na Primary Assembly 59897 na contig86 unplaced-scaffold na na JBJKTS010000066.1 <> na Primary Assembly 38801 na contig87 unplaced-scaffold na na JBJKTS010000067.1 <> na Primary Assembly 28613 na contig90 unplaced-scaffold na na JBJKTS010000068.1 <> na Primary Assembly 206735 na contig92 unplaced-scaffold na na JBJKTS010000069.1 <> na Primary Assembly 185720 na contig93 unplaced-scaffold na na JBJKTS010000070.1 <> na Primary Assembly 42471 na contig95 unplaced-scaffold na na JBJKTS010000071.1 <> na Primary Assembly 17023 na contig96 unplaced-scaffold na na JBJKTS010000072.1 <> na Primary Assembly 23814 na contig97 unplaced-scaffold na na JBJKTS010000073.1 <> na Primary Assembly 37825 na contig101 unplaced-scaffold na na JBJKTS010000074.1 <> na Primary Assembly 802071 na contig104 unplaced-scaffold na na JBJKTS010000075.1 <> na Primary Assembly 22446 na contig105 unplaced-scaffold na na JBJKTS010000076.1 <> na Primary Assembly 35739 na contig106 unplaced-scaffold na na JBJKTS010000077.1 <> na Primary Assembly 10737 na contig111 unplaced-scaffold na na JBJKTS010000078.1 <> na Primary Assembly 20723 na contig112 unplaced-scaffold na na JBJKTS010000079.1 <> na Primary Assembly 41740 na contig113 unplaced-scaffold na na JBJKTS010000080.1 <> na Primary Assembly 281027 na contig117 unplaced-scaffold na na JBJKTS010000081.1 <> na Primary Assembly 119622 na contig119 unplaced-scaffold na na JBJKTS010000082.1 <> na Primary Assembly 33969 na contig120 unplaced-scaffold na na JBJKTS010000083.1 <> na Primary Assembly 121342 na contig121 unplaced-scaffold na na JBJKTS010000084.1 <> na Primary Assembly 996112 na contig123 unplaced-scaffold na na JBJKTS010000085.1 <> na Primary Assembly 107520 na contig125 unplaced-scaffold na na JBJKTS010000086.1 <> na Primary Assembly 117615 na contig126 unplaced-scaffold na na JBJKTS010000087.1 <> na Primary Assembly 26894 na contig128 unplaced-scaffold na na JBJKTS010000088.1 <> na Primary Assembly 45940 na contig130 unplaced-scaffold na na JBJKTS010000089.1 <> na Primary Assembly 12837 na contig131 unplaced-scaffold na na JBJKTS010000090.1 <> na Primary Assembly 25952 na contig133 unplaced-scaffold na na JBJKTS010000091.1 <> na Primary Assembly 71566 na contig138 unplaced-scaffold na na JBJKTS010000092.1 <> na Primary Assembly 11154 na contig139 unplaced-scaffold na na JBJKTS010000093.1 <> na Primary Assembly 170025 na contig141 unplaced-scaffold na na JBJKTS010000094.1 <> na Primary Assembly 30207 na contig142 unplaced-scaffold na na JBJKTS010000095.1 <> na Primary Assembly 1067764 na contig143 unplaced-scaffold na na JBJKTS010000096.1 <> na Primary Assembly 13651 na contig144 unplaced-scaffold na na JBJKTS010000097.1 <> na Primary Assembly 12602 na contig145 unplaced-scaffold na na JBJKTS010000098.1 <> na Primary Assembly 23804 na contig146 unplaced-scaffold na na JBJKTS010000099.1 <> na Primary Assembly 17239 na contig150 unplaced-scaffold na na JBJKTS010000100.1 <> na Primary Assembly 22608 na contig152 unplaced-scaffold na na JBJKTS010000101.1 <> na Primary Assembly 214544 na contig154 unplaced-scaffold na na JBJKTS010000102.1 <> na Primary Assembly 1013317 na contig155 unplaced-scaffold na na JBJKTS010000103.1 <> na Primary Assembly 22314 na contig156 unplaced-scaffold na na JBJKTS010000104.1 <> na Primary Assembly 35568 na contig159 unplaced-scaffold na na JBJKTS010000105.1 <> na Primary Assembly 19406 na contig160 unplaced-scaffold na na JBJKTS010000106.1 <> na Primary Assembly 86521 na contig163 unplaced-scaffold na na JBJKTS010000107.1 <> na Primary Assembly 49585 na contig167 unplaced-scaffold na na JBJKTS010000108.1 <> na Primary Assembly 26763 na contig168 unplaced-scaffold na na JBJKTS010000109.1 <> na Primary Assembly 24577 na contig169 unplaced-scaffold na na JBJKTS010000110.1 <> na Primary Assembly 748540 na contig171 unplaced-scaffold na na JBJKTS010000111.1 <> na Primary Assembly 29346 na contig172 unplaced-scaffold na na JBJKTS010000112.1 <> na Primary Assembly 10771 na contig173 unplaced-scaffold na na JBJKTS010000113.1 <> na Primary Assembly 36465 na contig174 unplaced-scaffold na na JBJKTS010000114.1 <> na Primary Assembly 169644 na contig175 unplaced-scaffold na na JBJKTS010000115.1 <> na Primary Assembly 39729 na contig179 unplaced-scaffold na na JBJKTS010000116.1 <> na Primary Assembly 85736 na contig180 unplaced-scaffold na na JBJKTS010000117.1 <> na Primary Assembly 38475 na contig181 unplaced-scaffold na na JBJKTS010000118.1 <> na Primary Assembly 19823 na contig182 unplaced-scaffold na na JBJKTS010000119.1 <> na Primary Assembly 27492 na contig183 unplaced-scaffold na na JBJKTS010000120.1 <> na Primary Assembly 34517 na contig184 unplaced-scaffold na na JBJKTS010000121.1 <> na Primary Assembly 15053 na contig185 unplaced-scaffold na na JBJKTS010000122.1 <> na Primary Assembly 439928 na contig186 unplaced-scaffold na na JBJKTS010000123.1 <> na Primary Assembly 38914 na contig187 unplaced-scaffold na na JBJKTS010000124.1 <> na Primary Assembly 1658607 na contig188 unplaced-scaffold na na JBJKTS010000125.1 <> na Primary Assembly 43917 na contig189 unplaced-scaffold na na JBJKTS010000126.1 <> na Primary Assembly 51902 na contig191 unplaced-scaffold na na JBJKTS010000127.1 <> na Primary Assembly 23214 na contig192 unplaced-scaffold na na JBJKTS010000128.1 <> na Primary Assembly 144799 na contig194 unplaced-scaffold na na JBJKTS010000129.1 <> na Primary Assembly 18233 na contig195 unplaced-scaffold na na JBJKTS010000130.1 <> na Primary Assembly 29479 na contig200 unplaced-scaffold na na JBJKTS010000131.1 <> na Primary Assembly 51788 na contig205 unplaced-scaffold na na JBJKTS010000132.1 <> na Primary Assembly 41635 na contig209 unplaced-scaffold na na JBJKTS010000133.1 <> na Primary Assembly 42045 na contig210 unplaced-scaffold na na JBJKTS010000134.1 <> na Primary Assembly 41006 na contig214 unplaced-scaffold na na JBJKTS010000135.1 <> na Primary Assembly 54232 na contig215 unplaced-scaffold na na JBJKTS010000136.1 <> na Primary Assembly 27671 na contig216 unplaced-scaffold na na JBJKTS010000137.1 <> na Primary Assembly 84812 na chrMT assembled-molecule MT Mitochondrion CM099023.1 <> na non-nuclear 16308 na