# Assembly name:  mPanOnc1 haplotype 1
# Organism name:  Panthera onca (jaguar)
# Isolate:  mPanOnc1
# Sex:  male
# Taxid:          9690
# BioSample:      SAMN44524170
# BioProject:     PRJNA1180582
# Submitter:      Genomics of Brazilian Biodiversity
# Date:           2025-01-08
# Assembly type:  haploid (haplotype 1)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBKGDW01
# Assembly method: Pipeasm v. 1.0
# Expected final version: Yes
# Genome coverage: 69x
# Sequencing technology: PacBio Revio
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_046562885.2
# RefSeq assembly accession: GCF_046562885.1
# RefSeq assembly and GenBank assemblies identical: no
# Linked assembly: GCA_046562875.2 (haplotype 2)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_046562915.2	GCF_046562915.1	Primary Assembly
## 	GCF_032761955.1	non-nuclear
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
h1.Chr1	assembled-molecule	A1	Chromosome	CM102058.1	=	NC_136074.1	Primary Assembly	241924008	na
h1.Chr4	assembled-molecule	A2	Chromosome	CM102061.1	=	NC_136075.1	Primary Assembly	168529732	na
h1.Chr9	assembled-molecule	A3	Chromosome	CM102066.1	=	NC_136076.1	Primary Assembly	139607418	na
h1.Chr3	assembled-molecule	B1	Chromosome	CM102060.1	=	NC_136077.1	Primary Assembly	205771557	na
h1.Chr6	assembled-molecule	B2	Chromosome	CM102063.1	=	NC_136078.1	Primary Assembly	151524317	na
h1.Chr7	assembled-molecule	B3	Chromosome	CM102064.1	=	NC_136079.1	Primary Assembly	148304554	na
h1.Chr8	assembled-molecule	B4	Chromosome	CM102065.1	=	NC_136080.1	Primary Assembly	141644557	na
h1.Chr2	assembled-molecule	C1	Chromosome	CM102059.1	=	NC_136081.1	Primary Assembly	219838525	na
h1.Chr5	assembled-molecule	C2	Chromosome	CM102062.1	=	NC_136082.1	Primary Assembly	158556951	na
h1.Chr10	assembled-molecule	D1	Chromosome	CM102067.1	=	NC_136083.1	Primary Assembly	115488741	na
h1.Chr13	assembled-molecule	D2	Chromosome	CM102070.1	=	NC_136084.1	Primary Assembly	88346058	na
h1.Chr12	assembled-molecule	D3	Chromosome	CM102069.1	=	NC_136085.1	Primary Assembly	94776178	na
h1.Chr11	assembled-molecule	D4	Chromosome	CM102068.1	=	NC_136086.1	Primary Assembly	94025792	na
h1.Chr16	assembled-molecule	E1	Chromosome	CM102073.1	=	NC_136087.1	Primary Assembly	62745751	na
h1.Chr17	assembled-molecule	E2	Chromosome	CM102074.1	=	NC_136088.1	Primary Assembly	59583211	na
h1.Chr18	assembled-molecule	E3	Chromosome	CM102075.1	=	NC_136089.1	Primary Assembly	41820253	na
h1.Chr15	assembled-molecule	F1	Chromosome	CM102072.1	=	NC_136090.1	Primary Assembly	72614540	na
h1.Chr14	assembled-molecule	F2	Chromosome	CM102071.1	=	NC_136091.1	Primary Assembly	83236566	na
h1.Chr16_ul_1	unlocalized-scaffold	E1	Chromosome	JBKGDW010000019.1	=	NW_027612097.1	Primary Assembly	2167275	na
h1.Chr16_ul_2	unlocalized-scaffold	E1	Chromosome	JBKGDW010000020.1	=	NW_027612107.1	Primary Assembly	1458352	na
h1.Chr16_ul_3	unlocalized-scaffold	E1	Chromosome	JBKGDW010000021.1	=	NW_027612113.1	Primary Assembly	1144455	na
h1.Chr16_ul_4	unlocalized-scaffold	E1	Chromosome	JBKGDW010000022.1	=	NW_027612114.1	Primary Assembly	1115866	na
h1.Chr16_ul_5	unlocalized-scaffold	E1	Chromosome	JBKGDW010000023.1	=	NW_027612115.1	Primary Assembly	1007799	na
h1.Chr16_ul_6	unlocalized-scaffold	E1	Chromosome	JBKGDW010000024.1	=	NW_027612116.1	Primary Assembly	682137	na
h1.Chr16_ul_7	unlocalized-scaffold	E1	Chromosome	JBKGDW010000025.1	=	NW_027612117.1	Primary Assembly	561391	na
h1.Chr16_ul_8	unlocalized-scaffold	E1	Chromosome	JBKGDW010000026.1	=	NW_027612118.1	Primary Assembly	555902	na
h1.Chr16_ul_9	unlocalized-scaffold	E1	Chromosome	JBKGDW010000027.1	=	NW_027612119.1	Primary Assembly	503148	na
h1.Chr16_ul_10	unlocalized-scaffold	E1	Chromosome	JBKGDW010000028.1	=	NW_027612098.1	Primary Assembly	392869	na
h1.Chr16_ul_11	unlocalized-scaffold	E1	Chromosome	JBKGDW010000029.1	=	NW_027612099.1	Primary Assembly	323849	na
h1.Chr16_ul_12	unlocalized-scaffold	E1	Chromosome	JBKGDW010000030.1	=	NW_027612100.1	Primary Assembly	311305	na
h1.Chr16_ul_14	unlocalized-scaffold	E1	Chromosome	JBKGDW010000031.1	=	NW_027612101.1	Primary Assembly	236789	na
h1.Chr16_ul_15	unlocalized-scaffold	E1	Chromosome	JBKGDW010000032.1	=	NW_027612102.1	Primary Assembly	230698	na
h1.Chr16_ul_16	unlocalized-scaffold	E1	Chromosome	JBKGDW010000033.1	=	NW_027612103.1	Primary Assembly	138668	na
h1.Chr16_ul_17	unlocalized-scaffold	E1	Chromosome	JBKGDW010000034.1	=	NW_027612104.1	Primary Assembly	125266	na
h1.Chr16_ul_18	unlocalized-scaffold	E1	Chromosome	JBKGDW010000035.1	=	NW_027612105.1	Primary Assembly	84131	na
h1.Chr16_ul_19	unlocalized-scaffold	E1	Chromosome	JBKGDW010000036.1	=	NW_027612106.1	Primary Assembly	82827	na
h1.Chr16_ul_20	unlocalized-scaffold	E1	Chromosome	JBKGDW010000037.1	=	NW_027612108.1	Primary Assembly	80392	na
h1.Chr16_ul_21	unlocalized-scaffold	E1	Chromosome	JBKGDW010000038.1	=	NW_027612109.1	Primary Assembly	78248	na
h1.Chr16_ul_22	unlocalized-scaffold	E1	Chromosome	JBKGDW010000039.1	=	NW_027612110.1	Primary Assembly	77451	na
h1.Chr16_ul_23	unlocalized-scaffold	E1	Chromosome	JBKGDW010000040.1	=	NW_027612111.1	Primary Assembly	75355	na
h1.Chr16_ul_24	unlocalized-scaffold	E1	Chromosome	JBKGDW010000041.1	=	NW_027612112.1	Primary Assembly	71640	na
h1.Chr18_ul_1	unlocalized-scaffold	E3	Chromosome	JBKGDW010000042.1	=	NW_027612120.1	Primary Assembly	315074	na
h1.h1tg000068l_path	unplaced-scaffold	na	na	JBKGDW010000043.1	=	NW_027612121.1	Primary Assembly	176218	na
h1.h1tg000095c_path	unplaced-scaffold	na	na	JBKGDW010000044.1	=	NW_027612122.1	Primary Assembly	64723	na
h1.h1tg000126l_path	unplaced-scaffold	na	na	JBKGDW010000045.1	=	NW_027612123.1	Primary Assembly	33235	na
h1.h1tg000135l_path	unplaced-scaffold	na	na	JBKGDW010000046.1	=	NW_027612124.1	Primary Assembly	41838	na
h1.h1tg000137l_path	unplaced-scaffold	na	na	JBKGDW010000047.1	=	NW_027612125.1	Primary Assembly	130398	na
h1.h1tg000146l_path	unplaced-scaffold	na	na	JBKGDW010000048.1	=	NW_027612126.1	Primary Assembly	31335	na
h1.h1tg000153l_path	unplaced-scaffold	na	na	JBKGDW010000049.1	=	NW_027612127.1	Primary Assembly	17077	na
h1.h1tg000162l_path	unplaced-scaffold	na	na	JBKGDW010000050.1	=	NW_027612128.1	Primary Assembly	22926	na
h1.h1tg000168l_path	unplaced-scaffold	na	na	JBKGDW010000051.1	=	NW_027612129.1	Primary Assembly	87859	na
h1.h1tg000174l_path	unplaced-scaffold	na	na	JBKGDW010000052.1	=	NW_027612130.1	Primary Assembly	60535	na
h1.h1tg000175l_path	unplaced-scaffold	na	na	JBKGDW010000053.1	=	NW_027612131.1	Primary Assembly	118485	na
h1.h1tg000176l_path	unplaced-scaffold	na	na	JBKGDW010000054.1	=	NW_027612132.1	Primary Assembly	49354	na
h1.h1tg000177l_path	unplaced-scaffold	na	na	JBKGDW010000055.1	=	NW_027612133.1	Primary Assembly	24300	na
h1.h1tg000186c_path	unplaced-scaffold	na	na	JBKGDW010000056.1	=	NW_027612134.1	Primary Assembly	60613	na
h1.h1tg000188l_path	unplaced-scaffold	na	na	JBKGDW010000057.1	=	NW_027612135.1	Primary Assembly	16147	na
h1.h1tg000198l_path	unplaced-scaffold	na	na	JBKGDW010000058.1	=	NW_027612136.1	Primary Assembly	30442	na
h1.h1tg000199l_path	unplaced-scaffold	na	na	JBKGDW010000059.1	=	NW_027612137.1	Primary Assembly	25640	na
h1.h1tg000202l_path	unplaced-scaffold	na	na	JBKGDW010000060.1	=	NW_027612138.1	Primary Assembly	108723	na
h1.h1tg000203l_path	unplaced-scaffold	na	na	JBKGDW010000061.1	=	NW_027612139.1	Primary Assembly	20414	na
h1.h1tg000210l_path	unplaced-scaffold	na	na	JBKGDW010000062.1	=	NW_027612140.1	Primary Assembly	18709	na
h1.h1tg000211l_path	unplaced-scaffold	na	na	JBKGDW010000063.1	=	NW_027612141.1	Primary Assembly	30239	na
h1.h1tg000212l_path	unplaced-scaffold	na	na	JBKGDW010000064.1	=	NW_027612142.1	Primary Assembly	29354	na
h1.h1tg000213l_path	unplaced-scaffold	na	na	JBKGDW010000065.1	=	NW_027612143.1	Primary Assembly	30954	na
h1.h1tg000215l_path	unplaced-scaffold	na	na	JBKGDW010000066.1	=	NW_027612144.1	Primary Assembly	48066	na
h1.h1tg000216l_path	unplaced-scaffold	na	na	JBKGDW010000067.1	=	NW_027612145.1	Primary Assembly	28201	na
h1.h1tg000218l_path	unplaced-scaffold	na	na	JBKGDW010000068.1	=	NW_027612146.1	Primary Assembly	47818	na
h1.h1tg000219l_path	unplaced-scaffold	na	na	JBKGDW010000069.1	=	NW_027612147.1	Primary Assembly	101362	na
h1.h1tg000220l_path	unplaced-scaffold	na	na	JBKGDW010000070.1	=	NW_027612148.1	Primary Assembly	28590	na
h1.h1tg000221l_path	unplaced-scaffold	na	na	JBKGDW010000071.1	=	NW_027612149.1	Primary Assembly	54673	na
h1.h1tg000222l_path	unplaced-scaffold	na	na	JBKGDW010000072.1	=	NW_027612150.1	Primary Assembly	44801	na
h1.h1tg000227c_path	unplaced-scaffold	na	na	JBKGDW010000073.1	=	NW_027612151.1	Primary Assembly	162835	na
h1.h1tg000228l_path	unplaced-scaffold	na	na	JBKGDW010000074.1	=	NW_027612152.1	Primary Assembly	114242	na
h1.h1tg000229l_path	unplaced-scaffold	na	na	JBKGDW010000075.1	=	NW_027612153.1	Primary Assembly	56031	na
h1.h1tg000232l_path	unplaced-scaffold	na	na	JBKGDW010000076.1	=	NW_027612154.1	Primary Assembly	26012	na
h1.h1tg000233l_path	unplaced-scaffold	na	na	JBKGDW010000077.1	=	NW_027612155.1	Primary Assembly	51961	na
h1.h1tg000235l_path	unplaced-scaffold	na	na	JBKGDW010000078.1	=	NW_027612156.1	Primary Assembly	70942	na
h1.h1tg000238l_path	unplaced-scaffold	na	na	JBKGDW010000079.1	=	NW_027612157.1	Primary Assembly	93179	na
h1.h1tg000242l_path	unplaced-scaffold	na	na	JBKGDW010000080.1	=	NW_027612158.1	Primary Assembly	58477	na
h1.h1tg000244l_path	unplaced-scaffold	na	na	JBKGDW010000081.1	=	NW_027612159.1	Primary Assembly	19685	na
h1.h1tg000246l_path	unplaced-scaffold	na	na	JBKGDW010000082.1	=	NW_027612160.1	Primary Assembly	34982	na
h1.h1tg000247c_path	unplaced-scaffold	na	na	JBKGDW010000083.1	=	NW_027612161.1	Primary Assembly	37251	na
h1.h1tg000248l_path	unplaced-scaffold	na	na	JBKGDW010000084.1	=	NW_027612162.1	Primary Assembly	17083	na
h1.h1tg000250l_path	unplaced-scaffold	na	na	JBKGDW010000085.1	=	NW_027612163.1	Primary Assembly	28557	na
h1.h1tg000251l_path	unplaced-scaffold	na	na	JBKGDW010000086.1	=	NW_027612164.1	Primary Assembly	17716	na
h1.h1tg000252l_path	unplaced-scaffold	na	na	JBKGDW010000087.1	=	NW_027612165.1	Primary Assembly	29132	na
h1.h1tg000253l_path	unplaced-scaffold	na	na	JBKGDW010000088.1	=	NW_027612166.1	Primary Assembly	21491	na
h1.h1tg000254l_path	unplaced-scaffold	na	na	JBKGDW010000089.1	=	NW_027612167.1	Primary Assembly	19485	na
h1.h1tg000256c_path	unplaced-scaffold	na	na	JBKGDW010000090.1	=	NW_027612168.1	Primary Assembly	37697	na
h1.h1tg000259l_path	unplaced-scaffold	na	na	JBKGDW010000091.1	=	NW_027612169.1	Primary Assembly	57587	na
h1.h1tg000260l_path	unplaced-scaffold	na	na	JBKGDW010000092.1	=	NW_027612170.1	Primary Assembly	29471	na
h1.h1tg000261l_path	unplaced-scaffold	na	na	JBKGDW010000093.1	=	NW_027612171.1	Primary Assembly	21849	na
h1.h1tg000262l_path	unplaced-scaffold	na	na	JBKGDW010000094.1	=	NW_027612172.1	Primary Assembly	15670	na
h1.h1tg000265l_path	unplaced-scaffold	na	na	JBKGDW010000095.1	=	NW_027612173.1	Primary Assembly	17231	na
h1.h1tg000266l_path	unplaced-scaffold	na	na	JBKGDW010000096.1	=	NW_027612174.1	Primary Assembly	96768	na
h1.h1tg000267l_path	unplaced-scaffold	na	na	JBKGDW010000097.1	=	NW_027612175.1	Primary Assembly	23567	na
h1.h1tg000268l_path	unplaced-scaffold	na	na	JBKGDW010000098.1	=	NW_027612176.1	Primary Assembly	29524	na
h1.h1tg000269l_path	unplaced-scaffold	na	na	JBKGDW010000099.1	=	NW_027612177.1	Primary Assembly	27662	na
h1.h1tg000270l_path	unplaced-scaffold	na	na	JBKGDW010000100.1	=	NW_027612178.1	Primary Assembly	26323	na
h1.h1tg000271l_path	unplaced-scaffold	na	na	JBKGDW010000101.1	=	NW_027612179.1	Primary Assembly	21110	na
h1.h1tg000273l_path	unplaced-scaffold	na	na	JBKGDW010000102.1	=	NW_027612180.1	Primary Assembly	17105	na
h1.h1tg000274l_path	unplaced-scaffold	na	na	JBKGDW010000103.1	=	NW_027612181.1	Primary Assembly	17090	na
h1.h1tg000275l_path	unplaced-scaffold	na	na	JBKGDW010000104.1	=	NW_027612182.1	Primary Assembly	28958	na
h1.h1tg000276l_path	unplaced-scaffold	na	na	JBKGDW010000105.1	=	NW_027612183.1	Primary Assembly	17703	na
h1.h1tg000277l_path	unplaced-scaffold	na	na	JBKGDW010000106.1	=	NW_027612184.1	Primary Assembly	62214	na
h1.h1tg000278l_path	unplaced-scaffold	na	na	JBKGDW010000107.1	=	NW_027612185.1	Primary Assembly	17175	na
h1.h1tg000279l_path	unplaced-scaffold	na	na	JBKGDW010000108.1	=	NW_027612186.1	Primary Assembly	17386	na
h1.h1tg000280l_path	unplaced-scaffold	na	na	JBKGDW010000109.1	=	NW_027612187.1	Primary Assembly	30815	na
h1.h1tg000281l_path	unplaced-scaffold	na	na	JBKGDW010000110.1	=	NW_027612188.1	Primary Assembly	16161	na
h1.h1tg000282l_path	unplaced-scaffold	na	na	JBKGDW010000111.1	=	NW_027612189.1	Primary Assembly	23081	na
h1.h1tg000283l_path	unplaced-scaffold	na	na	JBKGDW010000112.1	=	NW_027612190.1	Primary Assembly	17029	na
h1.h1tg000284l_path	unplaced-scaffold	na	na	JBKGDW010000113.1	=	NW_027612191.1	Primary Assembly	29493	na
h1.h1tg000285l_path	unplaced-scaffold	na	na	JBKGDW010000114.1	=	NW_027612192.1	Primary Assembly	25116	na
h1.h1tg000286l_path	unplaced-scaffold	na	na	JBKGDW010000115.1	=	NW_027612193.1	Primary Assembly	19634	na
MT	assembled-molecule	MT	Mitochondrion	na	<>	NC_022842.1	non-nuclear	17049	na