# Assembly name: mCasCan1.hap2v2 # Organism name: Castor canadensis (American beaver) # Isolate: mCasCan1 # Sex: female # Taxid: 51338 # BioSample: SAMN45812786 # BioProject: PRJNA1197685 # Submitter: Vertebrate Genomes Project # Date: 2025-02-10 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLFKB01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.8 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 66.4x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_047511605.2 # Linked assembly: GCA_047511655.2 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_047511955.2 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM105189.1 <> na Primary Assembly 193563452 na SUPER_2 assembled-molecule 2 Chromosome CM105190.1 <> na Primary Assembly 205849273 na SUPER_3 assembled-molecule 3 Chromosome CM105191.1 <> na Primary Assembly 200424094 na SUPER_4 assembled-molecule 4 Chromosome CM105192.1 <> na Primary Assembly 185825117 na SUPER_5 assembled-molecule 5 Chromosome CM105193.1 <> na Primary Assembly 181089744 na SUPER_6 assembled-molecule 6 Chromosome CM105194.1 <> na Primary Assembly 174123335 na SUPER_7 assembled-molecule 7 Chromosome CM105195.1 <> na Primary Assembly 161259013 na SUPER_8 assembled-molecule 8 Chromosome CM105196.1 <> na Primary Assembly 157205366 na SUPER_9 assembled-molecule 9 Chromosome CM105197.1 <> na Primary Assembly 158538439 na SUPER_10 assembled-molecule 10 Chromosome CM105198.1 <> na Primary Assembly 142492712 na SUPER_11 assembled-molecule 11 Chromosome CM105199.1 <> na Primary Assembly 143017185 na SUPER_12 assembled-molecule 12 Chromosome CM105200.1 <> na Primary Assembly 129376733 na SUPER_13 assembled-molecule 13 Chromosome CM105201.1 <> na Primary Assembly 128647180 na SUPER_14 assembled-molecule 14 Chromosome CM105202.1 <> na Primary Assembly 110536895 na SUPER_15 assembled-molecule 15 Chromosome CM105203.1 <> na Primary Assembly 101012364 na SUPER_16 assembled-molecule 16 Chromosome CM105204.1 <> na Primary Assembly 84775804 na SUPER_17 assembled-molecule 17 Chromosome CM105205.1 <> na Primary Assembly 54466511 na SUPER_18 assembled-molecule 18 Chromosome CM105206.1 <> na Primary Assembly 43984506 na SUPER_19 assembled-molecule 19 Chromosome CM105207.1 <> na Primary Assembly 44087902 na SUPER_X assembled-molecule X Chromosome CM105208.1 <> na Primary Assembly 147335082 na HAP2_SCAFFOLD_8 unplaced-scaffold na na JBLFKB010000021.1 <> na Primary Assembly 41062 na HAP2_SCAFFOLD_18 unplaced-scaffold na na JBLFKB010000026.1 <> na Primary Assembly 40542 na HAP2_SCAFFOLD_22 unplaced-scaffold na na JBLFKB010000027.1 <> na Primary Assembly 43829 na HAP2_SCAFFOLD_35 unplaced-scaffold na na JBLFKB010000029.1 <> na Primary Assembly 41892 na HAP2_SCAFFOLD_36 unplaced-scaffold na na JBLFKB010000030.1 <> na Primary Assembly 41837 na HAP2_SCAFFOLD_57 unplaced-scaffold na na JBLFKB010000035.1 <> na Primary Assembly 40451 na HAP2_SCAFFOLD_79 unplaced-scaffold na na JBLFKB010000042.1 <> na Primary Assembly 50961 na HAP2_SCAFFOLD_80 unplaced-scaffold na na JBLFKB010000043.1 <> na Primary Assembly 50319 na HAP2_SCAFFOLD_81 unplaced-scaffold na na JBLFKB010000044.1 <> na Primary Assembly 50130 na HAP2_SCAFFOLD_85 unplaced-scaffold na na JBLFKB010000046.1 <> na Primary Assembly 49114 na HAP2_SCAFFOLD_87 unplaced-scaffold na na JBLFKB010000047.1 <> na Primary Assembly 48853 na HAP2_SCAFFOLD_95 unplaced-scaffold na na JBLFKB010000048.1 <> na Primary Assembly 52761 na HAP2_SCAFFOLD_96 unplaced-scaffold na na JBLFKB010000049.1 <> na Primary Assembly 52652 na HAP2_SCAFFOLD_97 unplaced-scaffold na na JBLFKB010000050.1 <> na Primary Assembly 52647 na HAP2_SCAFFOLD_103 unplaced-scaffold na na JBLFKB010000051.1 <> na Primary Assembly 51917 na HAP2_SCAFFOLD_106 unplaced-scaffold na na JBLFKB010000053.1 <> na Primary Assembly 51550 na HAP2_SCAFFOLD_107 unplaced-scaffold na na JBLFKB010000054.1 <> na Primary Assembly 51495 na HAP2_SCAFFOLD_113 unplaced-scaffold na na JBLFKB010000055.1 <> na Primary Assembly 45912 na HAP2_SCAFFOLD_118 unplaced-scaffold na na JBLFKB010000056.1 <> na Primary Assembly 45092 na HAP2_SCAFFOLD_121 unplaced-scaffold na na JBLFKB010000057.1 <> na Primary Assembly 44725 na HAP2_SCAFFOLD_147 unplaced-scaffold na na JBLFKB010000060.1 <> na Primary Assembly 27631 na HAP2_SCAFFOLD_163 unplaced-scaffold na na JBLFKB010000065.1 <> na Primary Assembly 26647 na HAP2_SCAFFOLD_182 unplaced-scaffold na na JBLFKB010000072.1 <> na Primary Assembly 28810 na HAP2_SCAFFOLD_186 unplaced-scaffold na na JBLFKB010000073.1 <> na Primary Assembly 22593 na HAP2_SCAFFOLD_190 unplaced-scaffold na na JBLFKB010000076.1 <> na Primary Assembly 21405 na HAP2_SCAFFOLD_194 unplaced-scaffold na na JBLFKB010000077.1 <> na Primary Assembly 19969 na HAP2_SCAFFOLD_201 unplaced-scaffold na na JBLFKB010000080.1 <> na Primary Assembly 15885 na HAP2_SCAFFOLD_203 unplaced-scaffold na na JBLFKB010000081.1 <> na Primary Assembly 26014 na HAP2_SCAFFOLD_208 unplaced-scaffold na na JBLFKB010000082.1 <> na Primary Assembly 25303 na HAP2_SCAFFOLD_226 unplaced-scaffold na na JBLFKB010000089.1 <> na Primary Assembly 35396 na HAP2_SCAFFOLD_231 unplaced-scaffold na na JBLFKB010000092.1 <> na Primary Assembly 34109 na HAP2_SCAFFOLD_232 unplaced-scaffold na na JBLFKB010000093.1 <> na Primary Assembly 34000 na HAP2_SCAFFOLD_236 unplaced-scaffold na na JBLFKB010000095.1 <> na Primary Assembly 33460 na HAP2_SCAFFOLD_240 unplaced-scaffold na na JBLFKB010000098.1 <> na Primary Assembly 38016 na HAP2_SCAFFOLD_244 unplaced-scaffold na na JBLFKB010000099.1 <> na Primary Assembly 37502 na HAP2_SCAFFOLD_248 unplaced-scaffold na na JBLFKB010000101.1 <> na Primary Assembly 33418 na HAP2_SCAFFOLD_250 unplaced-scaffold na na JBLFKB010000102.1 <> na Primary Assembly 36889 na HAP2_SCAFFOLD_256 unplaced-scaffold na na JBLFKB010000103.1 <> na Primary Assembly 36202 na HAP2_SCAFFOLD_276 unplaced-scaffold na na JBLFKB010000107.1 <> na Primary Assembly 33414 na HAP2_SCAFFOLD_290 unplaced-scaffold na na JBLFKB010000111.1 <> na Primary Assembly 32557 na HAP2_SCAFFOLD_293 unplaced-scaffold na na JBLFKB010000113.1 <> na Primary Assembly 256321 na HAP2_SCAFFOLD_301 unplaced-scaffold na na JBLFKB010000114.1 <> na Primary Assembly 263089 na HAP2_SCAFFOLD_302 unplaced-scaffold na na JBLFKB010000115.1 <> na Primary Assembly 262841 na HAP2_SCAFFOLD_307 unplaced-scaffold na na JBLFKB010000116.1 <> na Primary Assembly 236831 na HAP2_SCAFFOLD_310 unplaced-scaffold na na JBLFKB010000117.1 <> na Primary Assembly 220262 na HAP2_SCAFFOLD_311 unplaced-scaffold na na JBLFKB010000118.1 <> na Primary Assembly 220133 na HAP2_SCAFFOLD_313 unplaced-scaffold na na JBLFKB010000119.1 <> na Primary Assembly 458645 na HAP2_SCAFFOLD_329 unplaced-scaffold na na JBLFKB010000120.1 <> na Primary Assembly 290299 na HAP2_SCAFFOLD_331 unplaced-scaffold na na JBLFKB010000121.1 <> na Primary Assembly 159752 na HAP2_SCAFFOLD_334 unplaced-scaffold na na JBLFKB010000124.1 <> na Primary Assembly 152931 na HAP2_SCAFFOLD_335 unplaced-scaffold na na JBLFKB010000125.1 <> na Primary Assembly 151978 na HAP2_SCAFFOLD_336 unplaced-scaffold na na JBLFKB010000126.1 <> na Primary Assembly 151796 na HAP2_SCAFFOLD_337 unplaced-scaffold na na JBLFKB010000127.1 <> na Primary Assembly 151126 na HAP2_SCAFFOLD_339 unplaced-scaffold na na JBLFKB010000128.1 <> na Primary Assembly 162452 na HAP2_SCAFFOLD_341 unplaced-scaffold na na JBLFKB010000130.1 <> na Primary Assembly 136538 na HAP2_SCAFFOLD_342 unplaced-scaffold na na JBLFKB010000131.1 <> na Primary Assembly 135632 na HAP2_SCAFFOLD_343 unplaced-scaffold na na JBLFKB010000132.1 <> na Primary Assembly 133569 na HAP2_SCAFFOLD_344 unplaced-scaffold na na JBLFKB010000133.1 <> na Primary Assembly 133364 na HAP2_SCAFFOLD_347 unplaced-scaffold na na JBLFKB010000135.1 <> na Primary Assembly 130536 na HAP2_SCAFFOLD_348 unplaced-scaffold na na JBLFKB010000136.1 <> na Primary Assembly 192455 na HAP2_SCAFFOLD_349 unplaced-scaffold na na JBLFKB010000137.1 <> na Primary Assembly 212140 na HAP2_SCAFFOLD_350 unplaced-scaffold na na JBLFKB010000138.1 <> na Primary Assembly 210044 na HAP2_SCAFFOLD_351 unplaced-scaffold na na JBLFKB010000139.1 <> na Primary Assembly 206109 na HAP2_SCAFFOLD_352 unplaced-scaffold na na JBLFKB010000140.1 <> na Primary Assembly 204716 na HAP2_SCAFFOLD_353 unplaced-scaffold na na JBLFKB010000141.1 <> na Primary Assembly 201707 na HAP2_SCAFFOLD_354 unplaced-scaffold na na JBLFKB010000142.1 <> na Primary Assembly 201626 na HAP2_SCAFFOLD_355 unplaced-scaffold na na JBLFKB010000143.1 <> na Primary Assembly 198274 na HAP2_SCAFFOLD_356 unplaced-scaffold na na JBLFKB010000144.1 <> na Primary Assembly 192721 na HAP2_SCAFFOLD_358 unplaced-scaffold na na JBLFKB010000145.1 <> na Primary Assembly 191874 na HAP2_SCAFFOLD_359 unplaced-scaffold na na JBLFKB010000146.1 <> na Primary Assembly 187521 na HAP2_SCAFFOLD_361 unplaced-scaffold na na JBLFKB010000147.1 <> na Primary Assembly 179599 na HAP2_SCAFFOLD_362 unplaced-scaffold na na JBLFKB010000148.1 <> na Primary Assembly 179284 na HAP2_SCAFFOLD_363 unplaced-scaffold na na JBLFKB010000149.1 <> na Primary Assembly 169047 na HAP2_SCAFFOLD_364 unplaced-scaffold na na JBLFKB010000150.1 <> na Primary Assembly 167069 na HAP2_SCAFFOLD_365 unplaced-scaffold na na JBLFKB010000151.1 <> na Primary Assembly 162742 na HAP2_SCAFFOLD_430 unplaced-scaffold na na JBLFKB010000152.1 <> na Primary Assembly 130364 na HAP2_SCAFFOLD_449 unplaced-scaffold na na JBLFKB010000153.1 <> na Primary Assembly 67024 na HAP2_SCAFFOLD_451 unplaced-scaffold na na JBLFKB010000154.1 <> na Primary Assembly 62041 na HAP2_SCAFFOLD_457 unplaced-scaffold na na JBLFKB010000157.1 <> na Primary Assembly 60274 na HAP2_SCAFFOLD_459 unplaced-scaffold na na JBLFKB010000159.1 <> na Primary Assembly 73542 na HAP2_SCAFFOLD_460 unplaced-scaffold na na JBLFKB010000160.1 <> na Primary Assembly 73460 na HAP2_SCAFFOLD_462 unplaced-scaffold na na JBLFKB010000161.1 <> na Primary Assembly 72974 na HAP2_SCAFFOLD_464 unplaced-scaffold na na JBLFKB010000163.1 <> na Primary Assembly 72099 na HAP2_SCAFFOLD_470 unplaced-scaffold na na JBLFKB010000164.1 <> na Primary Assembly 71205 na HAP2_SCAFFOLD_472 unplaced-scaffold na na JBLFKB010000165.1 <> na Primary Assembly 69891 na HAP2_SCAFFOLD_474 unplaced-scaffold na na JBLFKB010000166.1 <> na Primary Assembly 67530 na HAP2_SCAFFOLD_477 unplaced-scaffold na na JBLFKB010000167.1 <> na Primary Assembly 55589 na HAP2_SCAFFOLD_489 unplaced-scaffold na na JBLFKB010000170.1 <> na Primary Assembly 53840 na HAP2_SCAFFOLD_490 unplaced-scaffold na na JBLFKB010000171.1 <> na Primary Assembly 53377 na HAP2_SCAFFOLD_491 unplaced-scaffold na na JBLFKB010000172.1 <> na Primary Assembly 53163 na HAP2_SCAFFOLD_498 unplaced-scaffold na na JBLFKB010000174.1 <> na Primary Assembly 59411 na HAP2_SCAFFOLD_501 unplaced-scaffold na na JBLFKB010000175.1 <> na Primary Assembly 58741 na HAP2_SCAFFOLD_504 unplaced-scaffold na na JBLFKB010000176.1 <> na Primary Assembly 58010 na HAP2_SCAFFOLD_506 unplaced-scaffold na na JBLFKB010000178.1 <> na Primary Assembly 57067 na HAP2_SCAFFOLD_509 unplaced-scaffold na na JBLFKB010000179.1 <> na Primary Assembly 56159 na HAP2_SCAFFOLD_513 unplaced-scaffold na na JBLFKB010000181.1 <> na Primary Assembly 100999 na HAP2_SCAFFOLD_514 unplaced-scaffold na na JBLFKB010000182.1 <> na Primary Assembly 100234 na HAP2_SCAFFOLD_515 unplaced-scaffold na na JBLFKB010000183.1 <> na Primary Assembly 99929 na HAP2_SCAFFOLD_520 unplaced-scaffold na na JBLFKB010000187.1 <> na Primary Assembly 98554 na HAP2_SCAFFOLD_521 unplaced-scaffold na na JBLFKB010000188.1 <> na Primary Assembly 101057 na HAP2_SCAFFOLD_526 unplaced-scaffold na na JBLFKB010000191.1 <> na Primary Assembly 91380 na HAP2_SCAFFOLD_529 unplaced-scaffold na na JBLFKB010000192.1 <> na Primary Assembly 89063 na HAP2_SCAFFOLD_530 unplaced-scaffold na na JBLFKB010000193.1 <> na Primary Assembly 116083 na HAP2_SCAFFOLD_531 unplaced-scaffold na na JBLFKB010000194.1 <> na Primary Assembly 127681 na HAP2_SCAFFOLD_532 unplaced-scaffold na na JBLFKB010000195.1 <> na Primary Assembly 122023 na HAP2_SCAFFOLD_533 unplaced-scaffold na na JBLFKB010000196.1 <> na Primary Assembly 119785 na HAP2_SCAFFOLD_534 unplaced-scaffold na na JBLFKB010000197.1 <> na Primary Assembly 119190 na HAP2_SCAFFOLD_535 unplaced-scaffold na na JBLFKB010000198.1 <> na Primary Assembly 118359 na HAP2_SCAFFOLD_538 unplaced-scaffold na na JBLFKB010000200.1 <> na Primary Assembly 117303 na HAP2_SCAFFOLD_539 unplaced-scaffold na na JBLFKB010000201.1 <> na Primary Assembly 88883 na HAP2_SCAFFOLD_540 unplaced-scaffold na na JBLFKB010000202.1 <> na Primary Assembly 113887 na HAP2_SCAFFOLD_541 unplaced-scaffold na na JBLFKB010000203.1 <> na Primary Assembly 111466 na HAP2_SCAFFOLD_542 unplaced-scaffold na na JBLFKB010000204.1 <> na Primary Assembly 111409 na HAP2_SCAFFOLD_543 unplaced-scaffold na na JBLFKB010000205.1 <> na Primary Assembly 110707 na HAP2_SCAFFOLD_544 unplaced-scaffold na na JBLFKB010000206.1 <> na Primary Assembly 110413 na HAP2_SCAFFOLD_546 unplaced-scaffold na na JBLFKB010000208.1 <> na Primary Assembly 104656 na HAP2_SCAFFOLD_547 unplaced-scaffold na na JBLFKB010000209.1 <> na Primary Assembly 103922 na HAP2_SCAFFOLD_550 unplaced-scaffold na na JBLFKB010000210.1 <> na Primary Assembly 79544 na HAP2_SCAFFOLD_552 unplaced-scaffold na na JBLFKB010000211.1 <> na Primary Assembly 79349 na HAP2_SCAFFOLD_556 unplaced-scaffold na na JBLFKB010000212.1 <> na Primary Assembly 76683 na HAP2_SCAFFOLD_557 unplaced-scaffold na na JBLFKB010000213.1 <> na Primary Assembly 80324 na HAP2_SCAFFOLD_559 unplaced-scaffold na na JBLFKB010000214.1 <> na Primary Assembly 75918 na HAP2_SCAFFOLD_560 unplaced-scaffold na na JBLFKB010000215.1 <> na Primary Assembly 75907 na HAP2_SCAFFOLD_563 unplaced-scaffold na na JBLFKB010000216.1 <> na Primary Assembly 74836 na HAP2_SCAFFOLD_564 unplaced-scaffold na na JBLFKB010000217.1 <> na Primary Assembly 74467 na HAP2_SCAFFOLD_571 unplaced-scaffold na na JBLFKB010000220.1 <> na Primary Assembly 85996 na HAP2_SCAFFOLD_573 unplaced-scaffold na na JBLFKB010000221.1 <> na Primary Assembly 85393 na HAP2_SCAFFOLD_574 unplaced-scaffold na na JBLFKB010000222.1 <> na Primary Assembly 83128 na HAP2_SCAFFOLD_577 unplaced-scaffold na na JBLFKB010000223.1 <> na Primary Assembly 82327 na HAP2_SCAFFOLD_579 unplaced-scaffold na na JBLFKB010000225.1 <> na Primary Assembly 81917 na HAP2_SCAFFOLD_580 unplaced-scaffold na na JBLFKB010000226.1 <> na Primary Assembly 81674 na HAP2_SCAFFOLD_581 unplaced-scaffold na na JBLFKB010000227.1 <> na Primary Assembly 81155 na HAP2_SCAFFOLD_582 unplaced-scaffold na na JBLFKB010000228.1 <> na Primary Assembly 81013 na