# Assembly name: rBraPum1.hap2 # Organism name: Bradypodion pumilum (lizards & snakes) # Infraspecific name: ecotype=Western Cape Province # Isolate: JTBG20231 # Sex: male # Taxid: 179887 # BioSample: SAMN35825189 # BioProject: PRJNA1172113 # Submitter: Vertebrate Genomes Project # Date: 2025-02-11 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLFLG01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.9 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 51.1x # Sequencing technology: PacBio Sequel II HiFi; Dovetail Omni-C # GenBank assembly accession: GCA_047715955.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_047715965.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM106084.1 <> na Primary Assembly 519964437 na SUPER_2 assembled-molecule 2 Chromosome CM106085.1 <> na Primary Assembly 476613123 na SUPER_3 assembled-molecule 3 Chromosome CM106086.1 <> na Primary Assembly 388707816 na SUPER_4 assembled-molecule 4 Chromosome CM106087.1 <> na Primary Assembly 348680079 na SUPER_5 assembled-molecule 5 Chromosome CM106088.1 <> na Primary Assembly 268343309 na SUPER_6 assembled-molecule 6 Chromosome CM106089.1 <> na Primary Assembly 146123549 na SUPER_7 assembled-molecule 7 Chromosome CM106090.1 <> na Primary Assembly 46442534 na SUPER_8 assembled-molecule 8 Chromosome CM106091.1 <> na Primary Assembly 43628960 na SUPER_9 assembled-molecule 9 Chromosome CM106092.1 <> na Primary Assembly 42888479 na SUPER_10 assembled-molecule 10 Chromosome CM106093.1 <> na Primary Assembly 28444465 na SUPER_11 assembled-molecule 11 Chromosome CM106094.1 <> na Primary Assembly 26084294 na SUPER_12 assembled-molecule 12 Chromosome CM106095.1 <> na Primary Assembly 21450492 na SUPER_13 assembled-molecule 13 Chromosome CM106096.1 <> na Primary Assembly 16840505 na SUPER_14 assembled-molecule 14 Chromosome CM106097.1 <> na Primary Assembly 16259577 na SUPER_15 assembled-molecule 15 Chromosome CM106098.1 <> na Primary Assembly 15638299 na SUPER_16 assembled-molecule 16 Chromosome CM106099.1 <> na Primary Assembly 12977769 na SUPER_Z assembled-molecule Z Chromosome CM106100.1 <> na Primary Assembly 37095987 na HAP2_SCAFFOLD_10 unplaced-scaffold na na JBLFLG010000018.1 <> na Primary Assembly 3326666 na HAP2_SCAFFOLD_12 unplaced-scaffold na na JBLFLG010000019.1 <> na Primary Assembly 2286748 na HAP2_SCAFFOLD_13 unplaced-scaffold na na JBLFLG010000020.1 <> na Primary Assembly 1977805 na HAP2_SCAFFOLD_15 unplaced-scaffold na na JBLFLG010000021.1 <> na Primary Assembly 1422512 na HAP2_SCAFFOLD_18 unplaced-scaffold na na JBLFLG010000022.1 <> na Primary Assembly 1095135 na HAP2_SCAFFOLD_19 unplaced-scaffold na na JBLFLG010000023.1 <> na Primary Assembly 1039228 na HAP2_SCAFFOLD_20 unplaced-scaffold na na JBLFLG010000024.1 <> na Primary Assembly 964801 na HAP2_SCAFFOLD_21 unplaced-scaffold na na JBLFLG010000025.1 <> na Primary Assembly 922796 na HAP2_SCAFFOLD_24 unplaced-scaffold na na JBLFLG010000026.1 <> na Primary Assembly 704707 na HAP2_SCAFFOLD_26 unplaced-scaffold na na JBLFLG010000027.1 <> na Primary Assembly 603375 na HAP2_SCAFFOLD_27 unplaced-scaffold na na JBLFLG010000028.1 <> na Primary Assembly 538446 na HAP2_SCAFFOLD_29 unplaced-scaffold na na JBLFLG010000029.1 <> na Primary Assembly 458575 na HAP2_SCAFFOLD_30 unplaced-scaffold na na JBLFLG010000030.1 <> na Primary Assembly 412859 na HAP2_SCAFFOLD_31 unplaced-scaffold na na JBLFLG010000031.1 <> na Primary Assembly 386465 na HAP2_SCAFFOLD_32 unplaced-scaffold na na JBLFLG010000032.1 <> na Primary Assembly 368217 na HAP2_SCAFFOLD_33 unplaced-scaffold na na JBLFLG010000033.1 <> na Primary Assembly 368102 na HAP2_SCAFFOLD_34 unplaced-scaffold na na JBLFLG010000034.1 <> na Primary Assembly 361896 na HAP2_SCAFFOLD_35 unplaced-scaffold na na JBLFLG010000035.1 <> na Primary Assembly 352124 na HAP2_SCAFFOLD_36 unplaced-scaffold na na JBLFLG010000036.1 <> na Primary Assembly 324199 na HAP2_SCAFFOLD_37 unplaced-scaffold na na JBLFLG010000037.1 <> na Primary Assembly 293368 na HAP2_SCAFFOLD_38 unplaced-scaffold na na JBLFLG010000038.1 <> na Primary Assembly 289469 na HAP2_SCAFFOLD_39 unplaced-scaffold na na JBLFLG010000039.1 <> na Primary Assembly 275216 na HAP2_SCAFFOLD_40 unplaced-scaffold na na JBLFLG010000040.1 <> na Primary Assembly 274449 na HAP2_SCAFFOLD_41 unplaced-scaffold na na JBLFLG010000041.1 <> na Primary Assembly 260930 na HAP2_SCAFFOLD_42 unplaced-scaffold na na JBLFLG010000042.1 <> na Primary Assembly 250008 na HAP2_SCAFFOLD_43 unplaced-scaffold na na JBLFLG010000043.1 <> na Primary Assembly 249250 na HAP2_SCAFFOLD_44 unplaced-scaffold na na JBLFLG010000044.1 <> na Primary Assembly 232952 na HAP2_SCAFFOLD_45 unplaced-scaffold na na JBLFLG010000045.1 <> na Primary Assembly 224814 na HAP2_SCAFFOLD_46 unplaced-scaffold na na JBLFLG010000046.1 <> na Primary Assembly 220391 na HAP2_SCAFFOLD_47 unplaced-scaffold na na JBLFLG010000047.1 <> na Primary Assembly 173730 na HAP2_SCAFFOLD_48 unplaced-scaffold na na JBLFLG010000048.1 <> na Primary Assembly 167631 na HAP2_SCAFFOLD_50 unplaced-scaffold na na JBLFLG010000049.1 <> na Primary Assembly 155650 na HAP2_SCAFFOLD_52 unplaced-scaffold na na JBLFLG010000050.1 <> na Primary Assembly 133084 na HAP2_SCAFFOLD_53 unplaced-scaffold na na JBLFLG010000051.1 <> na Primary Assembly 113815 na HAP2_SCAFFOLD_54 unplaced-scaffold na na JBLFLG010000052.1 <> na Primary Assembly 113336 na HAP2_SCAFFOLD_55 unplaced-scaffold na na JBLFLG010000053.1 <> na Primary Assembly 108836 na HAP2_SCAFFOLD_56 unplaced-scaffold na na JBLFLG010000054.1 <> na Primary Assembly 97928 na HAP2_SCAFFOLD_57 unplaced-scaffold na na JBLFLG010000055.1 <> na Primary Assembly 95853 na HAP2_SCAFFOLD_58 unplaced-scaffold na na JBLFLG010000056.1 <> na Primary Assembly 88612 na HAP2_SCAFFOLD_59 unplaced-scaffold na na JBLFLG010000057.1 <> na Primary Assembly 79293 na HAP2_SCAFFOLD_60 unplaced-scaffold na na JBLFLG010000058.1 <> na Primary Assembly 79243 na HAP2_SCAFFOLD_61 unplaced-scaffold na na JBLFLG010000059.1 <> na Primary Assembly 73264 na HAP2_SCAFFOLD_62 unplaced-scaffold na na JBLFLG010000060.1 <> na Primary Assembly 70533 na HAP2_SCAFFOLD_63 unplaced-scaffold na na JBLFLG010000061.1 <> na Primary Assembly 63343 na HAP2_SCAFFOLD_64 unplaced-scaffold na na JBLFLG010000062.1 <> na Primary Assembly 60240 na HAP2_SCAFFOLD_65 unplaced-scaffold na na JBLFLG010000063.1 <> na Primary Assembly 57638 na HAP2_SCAFFOLD_66 unplaced-scaffold na na JBLFLG010000064.1 <> na Primary Assembly 55120 na HAP2_SCAFFOLD_67 unplaced-scaffold na na JBLFLG010000065.1 <> na Primary Assembly 45194 na HAP2_SCAFFOLD_68 unplaced-scaffold na na JBLFLG010000066.1 <> na Primary Assembly 39607 na HAP2_SCAFFOLD_69 unplaced-scaffold na na JBLFLG010000067.1 <> na Primary Assembly 39148 na HAP2_SCAFFOLD_70 unplaced-scaffold na na JBLFLG010000068.1 <> na Primary Assembly 38217 na HAP2_SCAFFOLD_71 unplaced-scaffold na na JBLFLG010000069.1 <> na Primary Assembly 37935 na HAP2_SCAFFOLD_72 unplaced-scaffold na na JBLFLG010000070.1 <> na Primary Assembly 34667 na HAP2_SCAFFOLD_73 unplaced-scaffold na na JBLFLG010000071.1 <> na Primary Assembly 34568 na HAP2_SCAFFOLD_74 unplaced-scaffold na na JBLFLG010000072.1 <> na Primary Assembly 34341 na HAP2_SCAFFOLD_75 unplaced-scaffold na na JBLFLG010000073.1 <> na Primary Assembly 33331 na HAP2_SCAFFOLD_77 unplaced-scaffold na na JBLFLG010000074.1 <> na Primary Assembly 31483 na HAP2_SCAFFOLD_78 unplaced-scaffold na na JBLFLG010000075.1 <> na Primary Assembly 31335 na HAP2_SCAFFOLD_79 unplaced-scaffold na na JBLFLG010000076.1 <> na Primary Assembly 30857 na HAP2_SCAFFOLD_80 unplaced-scaffold na na JBLFLG010000077.1 <> na Primary Assembly 30562 na HAP2_SCAFFOLD_81 unplaced-scaffold na na JBLFLG010000078.1 <> na Primary Assembly 29529 na HAP2_SCAFFOLD_82 unplaced-scaffold na na JBLFLG010000079.1 <> na Primary Assembly 28189 na HAP2_SCAFFOLD_83 unplaced-scaffold na na JBLFLG010000080.1 <> na Primary Assembly 27749 na HAP2_SCAFFOLD_84 unplaced-scaffold na na JBLFLG010000081.1 <> na Primary Assembly 27375 na HAP2_SCAFFOLD_85 unplaced-scaffold na na JBLFLG010000082.1 <> na Primary Assembly 23047 na