# Assembly name: rBraPum1.hap1 # Organism name: Bradypodion pumilum (lizards & snakes) # Infraspecific name: ecotype=Western Cape Province # Isolate: JTBG20231 # Sex: male # Taxid: 179887 # BioSample: SAMN35825189 # BioProject: PRJNA1172112 # Submitter: Vertebrate Genomes Project # Date: 2025-02-12 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLFLF01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.9 + galaxy0; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 51.1x # Sequencing technology: PacBio Sequel II HiFi; Dovetail Omni-C # GenBank assembly accession: GCA_047715975.1 # Linked assembly: GCA_047715955.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_047715985.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM106101.1 <> na Primary Assembly 523729189 na SUPER_2 assembled-molecule 2 Chromosome CM106102.1 <> na Primary Assembly 483735652 na SUPER_3 assembled-molecule 3 Chromosome CM106103.1 <> na Primary Assembly 387402510 na SUPER_4 assembled-molecule 4 Chromosome CM106104.1 <> na Primary Assembly 345605577 na SUPER_5 assembled-molecule 5 Chromosome CM106105.1 <> na Primary Assembly 266414263 na SUPER_6 assembled-molecule 6 Chromosome CM106106.1 <> na Primary Assembly 148034888 na SUPER_7 assembled-molecule 7 Chromosome CM106107.1 <> na Primary Assembly 47676589 na SUPER_8 assembled-molecule 8 Chromosome CM106108.1 <> na Primary Assembly 42923329 na SUPER_9 assembled-molecule 9 Chromosome CM106109.1 <> na Primary Assembly 42841466 na SUPER_10 assembled-molecule 10 Chromosome CM106110.1 <> na Primary Assembly 28138873 na SUPER_11 assembled-molecule 11 Chromosome CM106111.1 <> na Primary Assembly 26213040 na SUPER_12 assembled-molecule 12 Chromosome CM106112.1 <> na Primary Assembly 21928937 na SUPER_13 assembled-molecule 13 Chromosome CM106113.1 <> na Primary Assembly 16823940 na SUPER_14 assembled-molecule 14 Chromosome CM106114.1 <> na Primary Assembly 15906044 na SUPER_15 assembled-molecule 15 Chromosome CM106115.1 <> na Primary Assembly 15606206 na SUPER_16 assembled-molecule 16 Chromosome CM106116.1 <> na Primary Assembly 12999675 na SUPER_Z assembled-molecule Z Chromosome CM106117.1 <> na Primary Assembly 37748019 na HAP1_SCAFFOLD_20 unplaced-scaffold na na JBLFLF010000018.1 <> na Primary Assembly 266802 na HAP1_SCAFFOLD_22 unplaced-scaffold na na JBLFLF010000019.1 <> na Primary Assembly 261418 na HAP1_SCAFFOLD_23 unplaced-scaffold na na JBLFLF010000020.1 <> na Primary Assembly 198722 na HAP1_SCAFFOLD_25 unplaced-scaffold na na JBLFLF010000021.1 <> na Primary Assembly 192973 na HAP1_SCAFFOLD_26 unplaced-scaffold na na JBLFLF010000022.1 <> na Primary Assembly 164064 na HAP1_SCAFFOLD_27 unplaced-scaffold na na JBLFLF010000023.1 <> na Primary Assembly 163380 na HAP1_SCAFFOLD_28 unplaced-scaffold na na JBLFLF010000024.1 <> na Primary Assembly 148405 na HAP1_SCAFFOLD_29 unplaced-scaffold na na JBLFLF010000025.1 <> na Primary Assembly 147286 na HAP1_SCAFFOLD_30 unplaced-scaffold na na JBLFLF010000026.1 <> na Primary Assembly 141982 na HAP1_SCAFFOLD_31 unplaced-scaffold na na JBLFLF010000027.1 <> na Primary Assembly 131422 na HAP1_SCAFFOLD_32 unplaced-scaffold na na JBLFLF010000028.1 <> na Primary Assembly 125871 na HAP1_SCAFFOLD_33 unplaced-scaffold na na JBLFLF010000029.1 <> na Primary Assembly 119890 na HAP1_SCAFFOLD_34 unplaced-scaffold na na JBLFLF010000030.1 <> na Primary Assembly 117298 na HAP1_SCAFFOLD_35 unplaced-scaffold na na JBLFLF010000031.1 <> na Primary Assembly 111022 na HAP1_SCAFFOLD_36 unplaced-scaffold na na JBLFLF010000032.1 <> na Primary Assembly 110182 na HAP1_SCAFFOLD_37 unplaced-scaffold na na JBLFLF010000033.1 <> na Primary Assembly 103321 na HAP1_SCAFFOLD_38 unplaced-scaffold na na JBLFLF010000034.1 <> na Primary Assembly 97613 na HAP1_SCAFFOLD_39 unplaced-scaffold na na JBLFLF010000035.1 <> na Primary Assembly 86582 na HAP1_SCAFFOLD_40 unplaced-scaffold na na JBLFLF010000036.1 <> na Primary Assembly 76888 na HAP1_SCAFFOLD_41 unplaced-scaffold na na JBLFLF010000037.1 <> na Primary Assembly 73783 na HAP1_SCAFFOLD_42 unplaced-scaffold na na JBLFLF010000038.1 <> na Primary Assembly 70383 na HAP1_SCAFFOLD_43 unplaced-scaffold na na JBLFLF010000039.1 <> na Primary Assembly 70133 na HAP1_SCAFFOLD_44 unplaced-scaffold na na JBLFLF010000040.1 <> na Primary Assembly 62570 na HAP1_SCAFFOLD_45 unplaced-scaffold na na JBLFLF010000041.1 <> na Primary Assembly 62478 na HAP1_SCAFFOLD_46 unplaced-scaffold na na JBLFLF010000042.1 <> na Primary Assembly 54274 na HAP1_SCAFFOLD_47 unplaced-scaffold na na JBLFLF010000043.1 <> na Primary Assembly 52787 na HAP1_SCAFFOLD_48 unplaced-scaffold na na JBLFLF010000044.1 <> na Primary Assembly 50862 na HAP1_SCAFFOLD_49 unplaced-scaffold na na JBLFLF010000045.1 <> na Primary Assembly 50420 na HAP1_SCAFFOLD_52 unplaced-scaffold na na JBLFLF010000046.1 <> na Primary Assembly 42107 na HAP1_SCAFFOLD_53 unplaced-scaffold na na JBLFLF010000047.1 <> na Primary Assembly 41507 na HAP1_SCAFFOLD_54 unplaced-scaffold na na JBLFLF010000048.1 <> na Primary Assembly 39055 na HAP1_SCAFFOLD_55 unplaced-scaffold na na JBLFLF010000049.1 <> na Primary Assembly 38256 na HAP1_SCAFFOLD_56 unplaced-scaffold na na JBLFLF010000050.1 <> na Primary Assembly 36751 na HAP1_SCAFFOLD_57 unplaced-scaffold na na JBLFLF010000051.1 <> na Primary Assembly 36670 na HAP1_SCAFFOLD_58 unplaced-scaffold na na JBLFLF010000052.1 <> na Primary Assembly 36554 na HAP1_SCAFFOLD_59 unplaced-scaffold na na JBLFLF010000053.1 <> na Primary Assembly 34568 na HAP1_SCAFFOLD_60 unplaced-scaffold na na JBLFLF010000054.1 <> na Primary Assembly 33614 na HAP1_SCAFFOLD_61 unplaced-scaffold na na JBLFLF010000055.1 <> na Primary Assembly 31760 na HAP1_SCAFFOLD_63 unplaced-scaffold na na JBLFLF010000056.1 <> na Primary Assembly 31557 na HAP1_SCAFFOLD_64 unplaced-scaffold na na JBLFLF010000057.1 <> na Primary Assembly 31439 na HAP1_SCAFFOLD_65 unplaced-scaffold na na JBLFLF010000058.1 <> na Primary Assembly 31335 na HAP1_SCAFFOLD_66 unplaced-scaffold na na JBLFLF010000059.1 <> na Primary Assembly 31111 na HAP1_SCAFFOLD_67 unplaced-scaffold na na JBLFLF010000060.1 <> na Primary Assembly 31016 na HAP1_SCAFFOLD_69 unplaced-scaffold na na JBLFLF010000061.1 <> na Primary Assembly 29432 na HAP1_SCAFFOLD_70 unplaced-scaffold na na JBLFLF010000062.1 <> na Primary Assembly 29384 na HAP1_SCAFFOLD_71 unplaced-scaffold na na JBLFLF010000063.1 <> na Primary Assembly 28774 na HAP1_SCAFFOLD_72 unplaced-scaffold na na JBLFLF010000064.1 <> na Primary Assembly 28672 na HAP1_SCAFFOLD_73 unplaced-scaffold na na JBLFLF010000065.1 <> na Primary Assembly 26680 na HAP1_SCAFFOLD_74 unplaced-scaffold na na JBLFLF010000066.1 <> na Primary Assembly 25692 na HAP1_SCAFFOLD_75 unplaced-scaffold na na JBLFLF010000067.1 <> na Primary Assembly 25370 na HAP1_SCAFFOLD_76 unplaced-scaffold na na JBLFLF010000068.1 <> na Primary Assembly 24270 na HAP1_SCAFFOLD_77 unplaced-scaffold na na JBLFLF010000069.1 <> na Primary Assembly 24114 na HAP1_SCAFFOLD_78 unplaced-scaffold na na JBLFLF010000070.1 <> na Primary Assembly 24009 na HAP1_SCAFFOLD_79 unplaced-scaffold na na JBLFLF010000071.1 <> na Primary Assembly 23385 na HAP1_SCAFFOLD_80 unplaced-scaffold na na JBLFLF010000072.1 <> na Primary Assembly 23187 na HAP1_SCAFFOLD_81 unplaced-scaffold na na JBLFLF010000073.1 <> na Primary Assembly 23047 na