# Assembly name: bZonAlb1.hap2 # Organism name: Zonotrichia albicollis (white-throated sparrow) # Isolate: bZonAlb1 # Sex: female # Taxid: 44394 # BioSample: SAMN46390924 # BioProject: PRJNA1214920 # Submitter: Vertebrate Genomes Project # Date: 2025-02-18 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLFLI01 # Assembly method: HiFiasm + Hi-C phasing v. 0.19.8 + galaxy1; YaHS v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 45.7x # Sequencing technology: PacBio Sequel IIe HiFi # GenBank assembly accession: GCA_047774235.1 # Linked assembly: GCA_047830755.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_047774245.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM106191.1 <> na Primary Assembly 156836853 na SUPER_2 assembled-molecule 2 Chromosome CM106192.1 <> na Primary Assembly 119342406 na SUPER_3 assembled-molecule 3 Chromosome CM106193.1 <> na Primary Assembly 118165865 na SUPER_4 assembled-molecule 4 Chromosome CM106194.1 <> na Primary Assembly 74749673 na SUPER_5 assembled-molecule 5 Chromosome CM106195.1 <> na Primary Assembly 74313678 na SUPER_6 assembled-molecule 6 Chromosome CM106196.1 <> na Primary Assembly 66000077 na SUPER_7 assembled-molecule 7 Chromosome CM106197.1 <> na Primary Assembly 54079886 na SUPER_8 assembled-molecule 8 Chromosome CM106198.1 <> na Primary Assembly 47015053 na SUPER_9 assembled-molecule 9 Chromosome CM106199.1 <> na Primary Assembly 41301466 na SUPER_10 assembled-molecule 10 Chromosome CM106200.1 <> na Primary Assembly 40864249 na SUPER_11 assembled-molecule 11 Chromosome CM106201.1 <> na Primary Assembly 22158992 na SUPER_12 assembled-molecule 12 Chromosome CM106202.1 <> na Primary Assembly 23035864 na SUPER_13 assembled-molecule 13 Chromosome CM106203.1 <> na Primary Assembly 23918885 na SUPER_14 assembled-molecule 14 Chromosome CM106204.1 <> na Primary Assembly 21260181 na SUPER_15 assembled-molecule 15 Chromosome CM106205.1 <> na Primary Assembly 20197081 na SUPER_16 assembled-molecule 16 Chromosome CM106206.1 <> na Primary Assembly 17629099 na SUPER_17 assembled-molecule 17 Chromosome CM106207.1 <> na Primary Assembly 16661742 na SUPER_18 assembled-molecule 18 Chromosome CM106208.1 <> na Primary Assembly 15558139 na SUPER_19 assembled-molecule 19 Chromosome CM106209.1 <> na Primary Assembly 13910638 na SUPER_20 assembled-molecule 20 Chromosome CM106210.1 <> na Primary Assembly 13820464 na SUPER_21 assembled-molecule 21 Chromosome CM106211.1 <> na Primary Assembly 12229109 na SUPER_22 assembled-molecule 22 Chromosome CM106212.1 <> na Primary Assembly 13231143 na SUPER_23 assembled-molecule 23 Chromosome CM106213.1 <> na Primary Assembly 10682443 na SUPER_24 assembled-molecule 24 Chromosome CM106214.1 <> na Primary Assembly 9088433 na SUPER_25 assembled-molecule 25 Chromosome CM106215.1 <> na Primary Assembly 9676863 na SUPER_26 assembled-molecule 26 Chromosome CM106216.1 <> na Primary Assembly 10623667 na SUPER_27 assembled-molecule 27 Chromosome CM106217.1 <> na Primary Assembly 9029626 na SUPER_28 assembled-molecule 28 Chromosome CM106218.1 <> na Primary Assembly 8230024 na SUPER_29 assembled-molecule 29 Chromosome CM106219.1 <> na Primary Assembly 6525068 na SUPER_30 assembled-molecule 30 Chromosome CM106220.1 <> na Primary Assembly 6296578 na SUPER_31 assembled-molecule 31 Chromosome CM106221.1 <> na Primary Assembly 9412941 na SUPER_32 assembled-molecule 32 Chromosome CM106222.1 <> na Primary Assembly 6987707 na SUPER_33 assembled-molecule 33 Chromosome CM106223.1 <> na Primary Assembly 5714619 na SUPER_34 assembled-molecule 34 Chromosome CM106224.1 <> na Primary Assembly 6257454 na SUPER_35 assembled-molecule 35 Chromosome CM106225.1 <> na Primary Assembly 6698078 na SUPER_36 assembled-molecule 36 Chromosome CM106226.1 <> na Primary Assembly 6771466 na SUPER_37 assembled-molecule 37 Chromosome CM106227.1 <> na Primary Assembly 6272711 na SUPER_38 assembled-molecule 38 Chromosome CM106228.1 <> na Primary Assembly 1798431 na SUPER_39 assembled-molecule 39 Chromosome CM106229.1 <> na Primary Assembly 2622567 na SUPER_40 assembled-molecule 40 Chromosome CM106230.1 <> na Primary Assembly 1137988 na SUPER_3_unloc_4 unlocalized-scaffold 3 Chromosome JBLFLI010000043.1 <> na Primary Assembly 1496943 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JBLFLI010000050.1 <> na Primary Assembly 940293 na SUPER_3_unloc_5 unlocalized-scaffold 3 Chromosome JBLFLI010000056.1 <> na Primary Assembly 522928 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome JBLFLI010000069.1 <> na Primary Assembly 265810 na SUPER_3_unloc_6 unlocalized-scaffold 3 Chromosome JBLFLI010000077.1 <> na Primary Assembly 191809 na SUPER_3_unloc_8 unlocalized-scaffold 3 Chromosome JBLFLI010000080.1 <> na Primary Assembly 168054 na SUPER_3_unloc_7 unlocalized-scaffold 3 Chromosome JBLFLI010000084.1 <> na Primary Assembly 146910 na SUPER_3_unloc_9 unlocalized-scaffold 3 Chromosome JBLFLI010000090.1 <> na Primary Assembly 124746 na SUPER_3_unloc_3 unlocalized-scaffold 3 Chromosome JBLFLI010000137.1 <> na Primary Assembly 37854 na SUPER_6_unloc_1 unlocalized-scaffold 6 Chromosome JBLFLI010000068.1 <> na Primary Assembly 285917 na SUPER_20_unloc_1 unlocalized-scaffold 20 Chromosome JBLFLI010000074.1 <> na Primary Assembly 203609 na SUPER_36_unloc_1 unlocalized-scaffold 36 Chromosome JBLFLI010000067.1 <> na Primary Assembly 350864 na SUPER_39_unloc_1 unlocalized-scaffold 39 Chromosome JBLFLI010000052.1 <> na Primary Assembly 717662 na Scaffold_255 unplaced-scaffold na na JBLFLI010000030.1 <> na Primary Assembly 7906739 na Scaffold_256 unplaced-scaffold na na JBLFLI010000035.1 <> na Primary Assembly 6451189 na Scaffold_84 unplaced-scaffold na na JBLFLI010000040.1 <> na Primary Assembly 4380569 na Scaffold_120 unplaced-scaffold na na JBLFLI010000042.1 <> na Primary Assembly 2121026 na Scaffold_123 unplaced-scaffold na na JBLFLI010000044.1 <> na Primary Assembly 1494718 na Scaffold_124 unplaced-scaffold na na JBLFLI010000045.1 <> na Primary Assembly 1483476 na Scaffold_85 unplaced-scaffold na na JBLFLI010000046.1 <> na Primary Assembly 1443104 na Scaffold_87 unplaced-scaffold na na JBLFLI010000047.1 <> na Primary Assembly 1170209 na Scaffold_88 unplaced-scaffold na na JBLFLI010000049.1 <> na Primary Assembly 1076731 na Scaffold_119 unplaced-scaffold na na JBLFLI010000051.1 <> na Primary Assembly 868821 na Scaffold_127 unplaced-scaffold na na JBLFLI010000053.1 <> na Primary Assembly 697542 na Scaffold_91 unplaced-scaffold na na JBLFLI010000054.1 <> na Primary Assembly 600261 na Scaffold_92 unplaced-scaffold na na JBLFLI010000055.1 <> na Primary Assembly 572717 na Scaffold_128 unplaced-scaffold na na JBLFLI010000057.1 <> na Primary Assembly 522135 na Scaffold_130 unplaced-scaffold na na JBLFLI010000058.1 <> na Primary Assembly 473433 na Scaffold_131 unplaced-scaffold na na JBLFLI010000059.1 <> na Primary Assembly 452820 na Scaffold_93 unplaced-scaffold na na JBLFLI010000060.1 <> na Primary Assembly 434909 na Scaffold_134 unplaced-scaffold na na JBLFLI010000061.1 <> na Primary Assembly 415041 na Scaffold_96 unplaced-scaffold na na JBLFLI010000062.1 <> na Primary Assembly 394278 na Scaffold_98 unplaced-scaffold na na JBLFLI010000063.1 <> na Primary Assembly 387668 na Scaffold_100 unplaced-scaffold na na JBLFLI010000064.1 <> na Primary Assembly 382006 na Scaffold_97 unplaced-scaffold na na JBLFLI010000065.1 <> na Primary Assembly 376240 na Scaffold_101 unplaced-scaffold na na JBLFLI010000066.1 <> na Primary Assembly 364603 na Scaffold_114 unplaced-scaffold na na JBLFLI010000070.1 <> na Primary Assembly 262815 na Scaffold_113 unplaced-scaffold na na JBLFLI010000071.1 <> na Primary Assembly 250129 na Scaffold_144 unplaced-scaffold na na JBLFLI010000072.1 <> na Primary Assembly 230981 na Scaffold_105 unplaced-scaffold na na JBLFLI010000073.1 <> na Primary Assembly 213375 na Scaffold_112 unplaced-scaffold na na JBLFLI010000075.1 <> na Primary Assembly 201941 na Scaffold_129 unplaced-scaffold na na JBLFLI010000076.1 <> na Primary Assembly 201522 na Scaffold_103 unplaced-scaffold na na JBLFLI010000078.1 <> na Primary Assembly 186595 na Scaffold_108 unplaced-scaffold na na JBLFLI010000079.1 <> na Primary Assembly 171650 na Scaffold_137 unplaced-scaffold na na JBLFLI010000081.1 <> na Primary Assembly 161507 na Scaffold_138 unplaced-scaffold na na JBLFLI010000082.1 <> na Primary Assembly 152486 na Scaffold_141 unplaced-scaffold na na JBLFLI010000083.1 <> na Primary Assembly 151900 na Scaffold_111 unplaced-scaffold na na JBLFLI010000085.1 <> na Primary Assembly 142964 na Scaffold_151 unplaced-scaffold na na JBLFLI010000086.1 <> na Primary Assembly 133914 na Scaffold_152 unplaced-scaffold na na JBLFLI010000087.1 <> na Primary Assembly 133673 na Scaffold_143 unplaced-scaffold na na JBLFLI010000088.1 <> na Primary Assembly 129188 na Scaffold_153 unplaced-scaffold na na JBLFLI010000089.1 <> na Primary Assembly 125948 na Scaffold_154 unplaced-scaffold na na JBLFLI010000091.1 <> na Primary Assembly 119088 na Scaffold_155 unplaced-scaffold na na JBLFLI010000092.1 <> na Primary Assembly 115389 na Scaffold_156 unplaced-scaffold na na JBLFLI010000093.1 <> na Primary Assembly 111191 na Scaffold_158 unplaced-scaffold na na JBLFLI010000094.1 <> na Primary Assembly 101096 na Scaffold_116 unplaced-scaffold na na JBLFLI010000095.1 <> na Primary Assembly 99309 na Scaffold_159 unplaced-scaffold na na JBLFLI010000096.1 <> na Primary Assembly 98593 na Scaffold_160 unplaced-scaffold na na JBLFLI010000097.1 <> na Primary Assembly 97591 na Scaffold_161 unplaced-scaffold na na JBLFLI010000098.1 <> na Primary Assembly 96179 na Scaffold_162 unplaced-scaffold na na JBLFLI010000099.1 <> na Primary Assembly 94805 na Scaffold_163 unplaced-scaffold na na JBLFLI010000100.1 <> na Primary Assembly 91063 na Scaffold_118 unplaced-scaffold na na JBLFLI010000101.1 <> na Primary Assembly 89231 na Scaffold_167 unplaced-scaffold na na JBLFLI010000102.1 <> na Primary Assembly 85925 na Scaffold_171 unplaced-scaffold na na JBLFLI010000103.1 <> na Primary Assembly 83651 na Scaffold_172 unplaced-scaffold na na JBLFLI010000104.1 <> na Primary Assembly 83618 na Scaffold_174 unplaced-scaffold na na JBLFLI010000105.1 <> na Primary Assembly 81887 na Scaffold_178 unplaced-scaffold na na JBLFLI010000106.1 <> na Primary Assembly 79605 na Scaffold_179 unplaced-scaffold na na JBLFLI010000107.1 <> na Primary Assembly 78822 na Scaffold_181 unplaced-scaffold na na JBLFLI010000108.1 <> na Primary Assembly 76615 na Scaffold_184 unplaced-scaffold na na JBLFLI010000109.1 <> na Primary Assembly 73582 na Scaffold_189 unplaced-scaffold na na JBLFLI010000110.1 <> na Primary Assembly 68791 na Scaffold_190 unplaced-scaffold na na JBLFLI010000111.1 <> na Primary Assembly 66778 na Scaffold_191 unplaced-scaffold na na JBLFLI010000112.1 <> na Primary Assembly 66058 na Scaffold_192 unplaced-scaffold na na JBLFLI010000113.1 <> na Primary Assembly 66055 na Scaffold_194 unplaced-scaffold na na JBLFLI010000114.1 <> na Primary Assembly 64617 na Scaffold_588 unplaced-scaffold na na JBLFLI010000115.1 <> na Primary Assembly 62364 na Scaffold_200 unplaced-scaffold na na JBLFLI010000116.1 <> na Primary Assembly 59929 na Scaffold_201 unplaced-scaffold na na JBLFLI010000117.1 <> na Primary Assembly 58606 na Scaffold_202 unplaced-scaffold na na JBLFLI010000118.1 <> na Primary Assembly 58330 na Scaffold_592 unplaced-scaffold na na JBLFLI010000119.1 <> na Primary Assembly 56049 na Scaffold_203 unplaced-scaffold na na JBLFLI010000120.1 <> na Primary Assembly 55936 na Scaffold_594 unplaced-scaffold na na JBLFLI010000121.1 <> na Primary Assembly 53451 na Scaffold_206 unplaced-scaffold na na JBLFLI010000122.1 <> na Primary Assembly 53371 na Scaffold_596 unplaced-scaffold na na JBLFLI010000123.1 <> na Primary Assembly 50114 na Scaffold_216 unplaced-scaffold na na JBLFLI010000124.1 <> na Primary Assembly 49685 na Scaffold_598 unplaced-scaffold na na JBLFLI010000125.1 <> na Primary Assembly 48930 na Scaffold_219 unplaced-scaffold na na JBLFLI010000126.1 <> na Primary Assembly 48791 na Scaffold_600 unplaced-scaffold na na JBLFLI010000127.1 <> na Primary Assembly 47221 na Scaffold_224 unplaced-scaffold na na JBLFLI010000128.1 <> na Primary Assembly 45400 na Scaffold_602 unplaced-scaffold na na JBLFLI010000129.1 <> na Primary Assembly 44751 na Scaffold_603 unplaced-scaffold na na JBLFLI010000130.1 <> na Primary Assembly 44512 na Scaffold_228 unplaced-scaffold na na JBLFLI010000131.1 <> na Primary Assembly 44512 na Scaffold_229 unplaced-scaffold na na JBLFLI010000132.1 <> na Primary Assembly 43636 na Scaffold_606 unplaced-scaffold na na JBLFLI010000133.1 <> na Primary Assembly 42914 na Scaffold_235 unplaced-scaffold na na JBLFLI010000134.1 <> na Primary Assembly 40718 na Scaffold_608 unplaced-scaffold na na JBLFLI010000135.1 <> na Primary Assembly 39977 na Scaffold_609 unplaced-scaffold na na JBLFLI010000136.1 <> na Primary Assembly 39584 na Scaffold_611 unplaced-scaffold na na JBLFLI010000138.1 <> na Primary Assembly 37364 na Scaffold_239 unplaced-scaffold na na JBLFLI010000139.1 <> na Primary Assembly 37289 na Scaffold_613 unplaced-scaffold na na JBLFLI010000140.1 <> na Primary Assembly 34203 na Scaffold_245 unplaced-scaffold na na JBLFLI010000141.1 <> na Primary Assembly 31607 na Scaffold_246 unplaced-scaffold na na JBLFLI010000142.1 <> na Primary Assembly 30562 na Scaffold_616 unplaced-scaffold na na JBLFLI010000143.1 <> na Primary Assembly 30308 na Scaffold_617 unplaced-scaffold na na JBLFLI010000144.1 <> na Primary Assembly 27548 na Scaffold_618 unplaced-scaffold na na JBLFLI010000145.1 <> na Primary Assembly 27083 na Scaffold_619 unplaced-scaffold na na JBLFLI010000146.1 <> na Primary Assembly 24492 na Scaffold_620 unplaced-scaffold na na JBLFLI010000147.1 <> na Primary Assembly 23098 na Scaffold_252 unplaced-scaffold na na JBLFLI010000148.1 <> na Primary Assembly 21024 na Scaffold_622 unplaced-scaffold na na JBLFLI010000149.1 <> na Primary Assembly 20251 na