# Assembly name: bZonAlb1.hap1 # Organism name: Zonotrichia albicollis (white-throated sparrow) # Isolate: bZonAlb1 # Sex: female # Taxid: 44394 # BioSample: SAMN46390924 # BioProject: PRJNA1214919 # Submitter: Vertebrate Genomes Project # Date: 2025-02-18 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLFLH01 # Assembly method: HiFiasm + Hi-C phasing v. 0.19.8 + galaxy1; YaHS v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 45.7x # Sequencing technology: PacBio Sequel IIe HiFi # GenBank assembly accession: GCA_047830755.1 # Linked assembly: GCA_047774235.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_047830765.1 Primary Assembly ## GCA_047830775.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM106231.1 <> na Primary Assembly 156573735 na SUPER_2 assembled-molecule 2 Chromosome CM106232.1 <> na Primary Assembly 120036411 na SUPER_3 assembled-molecule 3 Chromosome CM106233.1 <> na Primary Assembly 118420327 na SUPER_4 assembled-molecule 4 Chromosome CM106234.1 <> na Primary Assembly 74498227 na SUPER_5 assembled-molecule 5 Chromosome CM106235.1 <> na Primary Assembly 74180225 na SUPER_6 assembled-molecule 6 Chromosome CM106236.1 <> na Primary Assembly 64429512 na SUPER_7 assembled-molecule 7 Chromosome CM106237.1 <> na Primary Assembly 51087745 na SUPER_8 assembled-molecule 8 Chromosome CM106238.1 <> na Primary Assembly 45928137 na SUPER_9 assembled-molecule 9 Chromosome CM106239.1 <> na Primary Assembly 42571693 na SUPER_10 assembled-molecule 10 Chromosome CM106240.1 <> na Primary Assembly 39818357 na SUPER_11 assembled-molecule 11 Chromosome CM106241.1 <> na Primary Assembly 23654960 na SUPER_12 assembled-molecule 12 Chromosome CM106242.1 <> na Primary Assembly 23450748 na SUPER_13 assembled-molecule 13 Chromosome CM106243.1 <> na Primary Assembly 22574728 na SUPER_14 assembled-molecule 14 Chromosome CM106244.1 <> na Primary Assembly 20867465 na SUPER_15 assembled-molecule 15 Chromosome CM106245.1 <> na Primary Assembly 19322938 na SUPER_16 assembled-molecule 16 Chromosome CM106246.1 <> na Primary Assembly 17676528 na SUPER_17 assembled-molecule 17 Chromosome CM106247.1 <> na Primary Assembly 15937909 na SUPER_18 assembled-molecule 18 Chromosome CM106248.1 <> na Primary Assembly 15239876 na SUPER_19 assembled-molecule 19 Chromosome CM106249.1 <> na Primary Assembly 13791079 na SUPER_20 assembled-molecule 20 Chromosome CM106250.1 <> na Primary Assembly 12773598 na SUPER_21 assembled-molecule 21 Chromosome CM106251.1 <> na Primary Assembly 12535342 na SUPER_22 assembled-molecule 22 Chromosome CM106252.1 <> na Primary Assembly 12396035 na SUPER_23 assembled-molecule 23 Chromosome CM106253.1 <> na Primary Assembly 12267306 na SUPER_24 assembled-molecule 24 Chromosome CM106254.1 <> na Primary Assembly 10285887 na SUPER_25 assembled-molecule 25 Chromosome CM106255.1 <> na Primary Assembly 9661356 na SUPER_26 assembled-molecule 26 Chromosome CM106256.1 <> na Primary Assembly 9392015 na SUPER_27 assembled-molecule 27 Chromosome CM106257.1 <> na Primary Assembly 9059397 na SUPER_28 assembled-molecule 28 Chromosome CM106258.1 <> na Primary Assembly 7425353 na SUPER_29 assembled-molecule 29 Chromosome CM106259.1 <> na Primary Assembly 7043465 na SUPER_30 assembled-molecule 30 Chromosome CM106260.1 <> na Primary Assembly 6668912 na SUPER_31 assembled-molecule 31 Chromosome CM106261.1 <> na Primary Assembly 6466730 na SUPER_32 assembled-molecule 32 Chromosome CM106262.1 <> na Primary Assembly 6293293 na SUPER_33 assembled-molecule 33 Chromosome CM106263.1 <> na Primary Assembly 6235853 na SUPER_34 assembled-molecule 34 Chromosome CM106264.1 <> na Primary Assembly 5809483 na SUPER_35 assembled-molecule 35 Chromosome CM106265.1 <> na Primary Assembly 5134823 na SUPER_36 assembled-molecule 36 Chromosome CM106266.1 <> na Primary Assembly 5072367 na SUPER_37 assembled-molecule 37 Chromosome CM106267.1 <> na Primary Assembly 4341944 na SUPER_38 assembled-molecule 38 Chromosome CM106268.1 <> na Primary Assembly 1585898 na SUPER_39 assembled-molecule 39 Chromosome CM106269.1 <> na Primary Assembly 641595 na SUPER_40 assembled-molecule 40 Chromosome CM106270.1 <> na Primary Assembly 307946 na SUPER_W assembled-molecule W Chromosome CM106271.1 <> na Primary Assembly 34004880 na SUPER_Z assembled-molecule Z Chromosome CM106272.1 <> na Primary Assembly 87680227 na SUPER_3_unloc_7 unlocalized-scaffold 3 Chromosome JBLFLH010000048.1 <> na Primary Assembly 1203203 na SUPER_3_unloc_6 unlocalized-scaffold 3 Chromosome JBLFLH010000056.1 <> na Primary Assembly 489720 na SUPER_3_unloc_3 unlocalized-scaffold 3 Chromosome JBLFLH010000059.1 <> na Primary Assembly 381278 na SUPER_3_unloc_5 unlocalized-scaffold 3 Chromosome JBLFLH010000065.1 <> na Primary Assembly 251808 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome JBLFLH010000068.1 <> na Primary Assembly 218549 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JBLFLH010000078.1 <> na Primary Assembly 169566 na SUPER_3_unloc_4 unlocalized-scaffold 3 Chromosome JBLFLH010000099.1 <> na Primary Assembly 79775 na SUPER_6_unloc_1 unlocalized-scaffold 6 Chromosome JBLFLH010000060.1 <> na Primary Assembly 337618 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JBLFLH010000067.1 <> na Primary Assembly 235173 na SUPER_Z_unloc_1 unlocalized-scaffold Z Chromosome JBLFLH010000051.1 <> na Primary Assembly 861215 na Scaffold_257 unplaced-scaffold na na JBLFLH010000031.1 <> na Primary Assembly 8889956 na Scaffold_254 unplaced-scaffold na na JBLFLH010000033.1 <> na Primary Assembly 8323770 na Scaffold_83 unplaced-scaffold na na JBLFLH010000039.1 <> na Primary Assembly 5922778 na Scaffold_122 unplaced-scaffold na na JBLFLH010000044.1 <> na Primary Assembly 1876037 na Scaffold_121 unplaced-scaffold na na JBLFLH010000045.1 <> na Primary Assembly 1808597 na Scaffold_125 unplaced-scaffold na na JBLFLH010000047.1 <> na Primary Assembly 1457201 na Scaffold_126 unplaced-scaffold na na JBLFLH010000049.1 <> na Primary Assembly 1028846 na Scaffold_86 unplaced-scaffold na na JBLFLH010000050.1 <> na Primary Assembly 869993 na Scaffold_89 unplaced-scaffold na na JBLFLH010000052.1 <> na Primary Assembly 683294 na Scaffold_90 unplaced-scaffold na na JBLFLH010000054.1 <> na Primary Assembly 613500 na Scaffold_95 unplaced-scaffold na na JBLFLH010000055.1 <> na Primary Assembly 560296 na Scaffold_73_unloc_1 unplaced-scaffold na na JBLFLH010000057.1 <> na Primary Assembly 484307 na Scaffold_94 unplaced-scaffold na na JBLFLH010000058.1 <> na Primary Assembly 454578 na Scaffold_135 unplaced-scaffold na na JBLFLH010000062.1 <> na Primary Assembly 298386 na Scaffold_99 unplaced-scaffold na na JBLFLH010000063.1 <> na Primary Assembly 282696 na Scaffold_149 unplaced-scaffold na na JBLFLH010000064.1 <> na Primary Assembly 282020 na Scaffold_133 unplaced-scaffold na na JBLFLH010000066.1 <> na Primary Assembly 244380 na Scaffold_102 unplaced-scaffold na na JBLFLH010000069.1 <> na Primary Assembly 217687 na Scaffold_150 unplaced-scaffold na na JBLFLH010000070.1 <> na Primary Assembly 195607 na Scaffold_136 unplaced-scaffold na na JBLFLH010000071.1 <> na Primary Assembly 193424 na Scaffold_104 unplaced-scaffold na na JBLFLH010000072.1 <> na Primary Assembly 185108 na Scaffold_132 unplaced-scaffold na na JBLFLH010000073.1 <> na Primary Assembly 180964 na Scaffold_115 unplaced-scaffold na na JBLFLH010000074.1 <> na Primary Assembly 180626 na Scaffold_106 unplaced-scaffold na na JBLFLH010000075.1 <> na Primary Assembly 177893 na Scaffold_107 unplaced-scaffold na na JBLFLH010000076.1 <> na Primary Assembly 173938 na Scaffold_109 unplaced-scaffold na na JBLFLH010000077.1 <> na Primary Assembly 171118 na Scaffold_110 unplaced-scaffold na na JBLFLH010000079.1 <> na Primary Assembly 163546 na Scaffold_139 unplaced-scaffold na na JBLFLH010000080.1 <> na Primary Assembly 162822 na Scaffold_148 unplaced-scaffold na na JBLFLH010000081.1 <> na Primary Assembly 149585 na Scaffold_140 unplaced-scaffold na na JBLFLH010000082.1 <> na Primary Assembly 144327 na Scaffold_145 unplaced-scaffold na na JBLFLH010000083.1 <> na Primary Assembly 128682 na Scaffold_146 unplaced-scaffold na na JBLFLH010000084.1 <> na Primary Assembly 127950 na Scaffold_147 unplaced-scaffold na na JBLFLH010000085.1 <> na Primary Assembly 126250 na Scaffold_142 unplaced-scaffold na na JBLFLH010000086.1 <> na Primary Assembly 117075 na Scaffold_157 unplaced-scaffold na na JBLFLH010000087.1 <> na Primary Assembly 103544 na Scaffold_117 unplaced-scaffold na na JBLFLH010000088.1 <> na Primary Assembly 100141 na Scaffold_164 unplaced-scaffold na na JBLFLH010000089.1 <> na Primary Assembly 90480 na Scaffold_165 unplaced-scaffold na na JBLFLH010000090.1 <> na Primary Assembly 89440 na Scaffold_166 unplaced-scaffold na na JBLFLH010000091.1 <> na Primary Assembly 86826 na Scaffold_168 unplaced-scaffold na na JBLFLH010000092.1 <> na Primary Assembly 84957 na Scaffold_169 unplaced-scaffold na na JBLFLH010000093.1 <> na Primary Assembly 84401 na Scaffold_170 unplaced-scaffold na na JBLFLH010000094.1 <> na Primary Assembly 84249 na Scaffold_173 unplaced-scaffold na na JBLFLH010000095.1 <> na Primary Assembly 83596 na Scaffold_175 unplaced-scaffold na na JBLFLH010000096.1 <> na Primary Assembly 81189 na Scaffold_176 unplaced-scaffold na na JBLFLH010000097.1 <> na Primary Assembly 80240 na Scaffold_177 unplaced-scaffold na na JBLFLH010000098.1 <> na Primary Assembly 79926 na Scaffold_180 unplaced-scaffold na na JBLFLH010000100.1 <> na Primary Assembly 78795 na Scaffold_182 unplaced-scaffold na na JBLFLH010000101.1 <> na Primary Assembly 76522 na Scaffold_183 unplaced-scaffold na na JBLFLH010000102.1 <> na Primary Assembly 75567 na Scaffold_185 unplaced-scaffold na na JBLFLH010000103.1 <> na Primary Assembly 72720 na Scaffold_186 unplaced-scaffold na na JBLFLH010000104.1 <> na Primary Assembly 72696 na Scaffold_187 unplaced-scaffold na na JBLFLH010000105.1 <> na Primary Assembly 72553 na Scaffold_188 unplaced-scaffold na na JBLFLH010000106.1 <> na Primary Assembly 70508 na Scaffold_376 unplaced-scaffold na na JBLFLH010000107.1 <> na Primary Assembly 65627 na Scaffold_193 unplaced-scaffold na na JBLFLH010000108.1 <> na Primary Assembly 64785 na Scaffold_195 unplaced-scaffold na na JBLFLH010000109.1 <> na Primary Assembly 64148 na Scaffold_196 unplaced-scaffold na na JBLFLH010000110.1 <> na Primary Assembly 63268 na Scaffold_197 unplaced-scaffold na na JBLFLH010000111.1 <> na Primary Assembly 62956 na Scaffold_198 unplaced-scaffold na na JBLFLH010000112.1 <> na Primary Assembly 62500 na Scaffold_199 unplaced-scaffold na na JBLFLH010000113.1 <> na Primary Assembly 60218 na Scaffold_204 unplaced-scaffold na na JBLFLH010000114.1 <> na Primary Assembly 55263 na Scaffold_205 unplaced-scaffold na na JBLFLH010000115.1 <> na Primary Assembly 54841 na Scaffold_207 unplaced-scaffold na na JBLFLH010000116.1 <> na Primary Assembly 53166 na Scaffold_386 unplaced-scaffold na na JBLFLH010000117.1 <> na Primary Assembly 52216 na Scaffold_208 unplaced-scaffold na na JBLFLH010000118.1 <> na Primary Assembly 51939 na Scaffold_209 unplaced-scaffold na na JBLFLH010000119.1 <> na Primary Assembly 51850 na Scaffold_389 unplaced-scaffold na na JBLFLH010000120.1 <> na Primary Assembly 51721 na Scaffold_210 unplaced-scaffold na na JBLFLH010000121.1 <> na Primary Assembly 51379 na Scaffold_211 unplaced-scaffold na na JBLFLH010000122.1 <> na Primary Assembly 51101 na Scaffold_392 unplaced-scaffold na na JBLFLH010000123.1 <> na Primary Assembly 51030 na Scaffold_212 unplaced-scaffold na na JBLFLH010000124.1 <> na Primary Assembly 50443 na Scaffold_213 unplaced-scaffold na na JBLFLH010000125.1 <> na Primary Assembly 50235 na Scaffold_214 unplaced-scaffold na na JBLFLH010000126.1 <> na Primary Assembly 49941 na Scaffold_215 unplaced-scaffold na na JBLFLH010000127.1 <> na Primary Assembly 49912 na Scaffold_397 unplaced-scaffold na na JBLFLH010000128.1 <> na Primary Assembly 49772 na Scaffold_217 unplaced-scaffold na na JBLFLH010000129.1 <> na Primary Assembly 49144 na Scaffold_218 unplaced-scaffold na na JBLFLH010000130.1 <> na Primary Assembly 48890 na Scaffold_400 unplaced-scaffold na na JBLFLH010000131.1 <> na Primary Assembly 47759 na Scaffold_220 unplaced-scaffold na na JBLFLH010000132.1 <> na Primary Assembly 47703 na Scaffold_221 unplaced-scaffold na na JBLFLH010000133.1 <> na Primary Assembly 47611 na Scaffold_222 unplaced-scaffold na na JBLFLH010000134.1 <> na Primary Assembly 47167 na Scaffold_223 unplaced-scaffold na na JBLFLH010000135.1 <> na Primary Assembly 46348 na Scaffold_405 unplaced-scaffold na na JBLFLH010000136.1 <> na Primary Assembly 45581 na Scaffold_406 unplaced-scaffold na na JBLFLH010000137.1 <> na Primary Assembly 45248 na Scaffold_225 unplaced-scaffold na na JBLFLH010000138.1 <> na Primary Assembly 44894 na Scaffold_226 unplaced-scaffold na na JBLFLH010000139.1 <> na Primary Assembly 44758 na Scaffold_227 unplaced-scaffold na na JBLFLH010000140.1 <> na Primary Assembly 44698 na Scaffold_410 unplaced-scaffold na na JBLFLH010000141.1 <> na Primary Assembly 43448 na Scaffold_230 unplaced-scaffold na na JBLFLH010000142.1 <> na Primary Assembly 43013 na Scaffold_231 unplaced-scaffold na na JBLFLH010000143.1 <> na Primary Assembly 42890 na Scaffold_413 unplaced-scaffold na na JBLFLH010000144.1 <> na Primary Assembly 42576 na Scaffold_232 unplaced-scaffold na na JBLFLH010000145.1 <> na Primary Assembly 42170 na Scaffold_233 unplaced-scaffold na na JBLFLH010000146.1 <> na Primary Assembly 41690 na Scaffold_416 unplaced-scaffold na na JBLFLH010000147.1 <> na Primary Assembly 41063 na Scaffold_234 unplaced-scaffold na na JBLFLH010000148.1 <> na Primary Assembly 41046 na Scaffold_418 unplaced-scaffold na na JBLFLH010000149.1 <> na Primary Assembly 40754 na Scaffold_236 unplaced-scaffold na na JBLFLH010000150.1 <> na Primary Assembly 39931 na Scaffold_237 unplaced-scaffold na na JBLFLH010000151.1 <> na Primary Assembly 39264 na Scaffold_421 unplaced-scaffold na na JBLFLH010000152.1 <> na Primary Assembly 38363 na Scaffold_422 unplaced-scaffold na na JBLFLH010000153.1 <> na Primary Assembly 37497 na Scaffold_238 unplaced-scaffold na na JBLFLH010000154.1 <> na Primary Assembly 37403 na Scaffold_424 unplaced-scaffold na na JBLFLH010000155.1 <> na Primary Assembly 36810 na Scaffold_240 unplaced-scaffold na na JBLFLH010000156.1 <> na Primary Assembly 36802 na Scaffold_426 unplaced-scaffold na na JBLFLH010000157.1 <> na Primary Assembly 36564 na Scaffold_241 unplaced-scaffold na na JBLFLH010000158.1 <> na Primary Assembly 36422 na Scaffold_428 unplaced-scaffold na na JBLFLH010000159.1 <> na Primary Assembly 35833 na Scaffold_242 unplaced-scaffold na na JBLFLH010000160.1 <> na Primary Assembly 34361 na Scaffold_243 unplaced-scaffold na na JBLFLH010000161.1 <> na Primary Assembly 34151 na Scaffold_431 unplaced-scaffold na na JBLFLH010000162.1 <> na Primary Assembly 33757 na Scaffold_244 unplaced-scaffold na na JBLFLH010000163.1 <> na Primary Assembly 33269 na Scaffold_433 unplaced-scaffold na na JBLFLH010000164.1 <> na Primary Assembly 32298 na Scaffold_434 unplaced-scaffold na na JBLFLH010000165.1 <> na Primary Assembly 31775 na Scaffold_435 unplaced-scaffold na na JBLFLH010000166.1 <> na Primary Assembly 30709 na Scaffold_436 unplaced-scaffold na na JBLFLH010000167.1 <> na Primary Assembly 29960 na Scaffold_247 unplaced-scaffold na na JBLFLH010000168.1 <> na Primary Assembly 29464 na Scaffold_438 unplaced-scaffold na na JBLFLH010000169.1 <> na Primary Assembly 28754 na Scaffold_248 unplaced-scaffold na na JBLFLH010000170.1 <> na Primary Assembly 28595 na Scaffold_440 unplaced-scaffold na na JBLFLH010000171.1 <> na Primary Assembly 27574 na Scaffold_249 unplaced-scaffold na na JBLFLH010000172.1 <> na Primary Assembly 27450 na Scaffold_442 unplaced-scaffold na na JBLFLH010000173.1 <> na Primary Assembly 26177 na Scaffold_250 unplaced-scaffold na na JBLFLH010000174.1 <> na Primary Assembly 25852 na Scaffold_444 unplaced-scaffold na na JBLFLH010000175.1 <> na Primary Assembly 25641 na Scaffold_251 unplaced-scaffold na na JBLFLH010000176.1 <> na Primary Assembly 23927 na Scaffold_446 unplaced-scaffold na na JBLFLH010000177.1 <> na Primary Assembly 23214 na Scaffold_447 unplaced-scaffold na na JBLFLH010000178.1 <> na Primary Assembly 17222 na Scaffold_448 unplaced-scaffold na na JBLFLH010000179.1 <> na Primary Assembly 15741 na Scaffold_253 unplaced-scaffold na na JBLFLH010000180.1 <> na Primary Assembly 12643 na ptg000008l_rotated assembled-molecule MT Mitochondrion CM106273.1 <> na non-nuclear 16783 na