# Assembly name: mCanLup2.hap2 # Organism name: Canis lupus baileyi (Mexican gray wolf) # Isolate: mCanLup2 # Sex: male # Taxid: 143281 # BioSample: SAMN46796784 # BioProject: PRJNA1223037 # Submitter: Vertebrate Genomes Project # Date: 2025-02-27 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLSAH01 # Assembly method: Hifiasm + Hi-C phasing v. 0.16.1 + galaxy4; yahs v. 1.2a.2 galaxy1 # Expected final version: no # Genome coverage: 35.4x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_048164845.1 # Linked assembly: GCA_048164855.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_048164865.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM107011.1 <> na Primary Assembly 123036378 na SUPER_2 assembled-molecule 2 Chromosome CM107012.1 <> na Primary Assembly 93343418 na SUPER_3 assembled-molecule 3 Chromosome CM107013.1 <> na Primary Assembly 90071197 na SUPER_4 assembled-molecule 4 Chromosome CM107014.1 <> na Primary Assembly 89751622 na SUPER_5 assembled-molecule 5 Chromosome CM107015.1 <> na Primary Assembly 87131439 na SUPER_6 assembled-molecule 6 Chromosome CM107016.1 <> na Primary Assembly 82215210 na SUPER_7 assembled-molecule 7 Chromosome CM107017.1 <> na Primary Assembly 74543196 na SUPER_8 assembled-molecule 8 Chromosome CM107018.1 <> na Primary Assembly 78247807 na SUPER_9 assembled-molecule 9 Chromosome CM107019.1 <> na Primary Assembly 76976054 na SUPER_10 assembled-molecule 10 Chromosome CM107020.1 <> na Primary Assembly 76584214 na SUPER_11 assembled-molecule 11 Chromosome CM107021.1 <> na Primary Assembly 71852875 na SUPER_12 assembled-molecule 12 Chromosome CM107022.1 <> na Primary Assembly 66396278 na SUPER_13 assembled-molecule 13 Chromosome CM107023.1 <> na Primary Assembly 65819357 na SUPER_14 assembled-molecule 14 Chromosome CM107024.1 <> na Primary Assembly 65755526 na SUPER_15 assembled-molecule 15 Chromosome CM107025.1 <> na Primary Assembly 63049500 na SUPER_16 assembled-molecule 16 Chromosome CM107026.1 <> na Primary Assembly 64057063 na SUPER_17 assembled-molecule 17 Chromosome CM107027.1 <> na Primary Assembly 63144286 na SUPER_18 assembled-molecule 18 Chromosome CM107028.1 <> na Primary Assembly 63158034 na SUPER_19 assembled-molecule 19 Chromosome CM107029.1 <> na Primary Assembly 59743136 na SUPER_20 assembled-molecule 20 Chromosome CM107030.1 <> na Primary Assembly 59164490 na SUPER_21 assembled-molecule 21 Chromosome CM107031.1 <> na Primary Assembly 58085477 na SUPER_22 assembled-molecule 22 Chromosome CM107032.1 <> na Primary Assembly 54363455 na SUPER_23 assembled-molecule 23 Chromosome CM107033.1 <> na Primary Assembly 53378704 na SUPER_24 assembled-molecule 24 Chromosome CM107034.1 <> na Primary Assembly 53154047 na SUPER_25 assembled-molecule 25 Chromosome CM107035.1 <> na Primary Assembly 50601991 na SUPER_26 assembled-molecule 26 Chromosome CM107036.1 <> na Primary Assembly 49843813 na SUPER_27 assembled-molecule 27 Chromosome CM107037.1 <> na Primary Assembly 45077409 na SUPER_28 assembled-molecule 28 Chromosome CM107038.1 <> na Primary Assembly 46497059 na SUPER_29 assembled-molecule 29 Chromosome CM107039.1 <> na Primary Assembly 45462993 na SUPER_30 assembled-molecule 30 Chromosome CM107040.1 <> na Primary Assembly 42389827 na SUPER_31 assembled-molecule 31 Chromosome CM107041.1 <> na Primary Assembly 43694416 na SUPER_32 assembled-molecule 32 Chromosome CM107042.1 <> na Primary Assembly 43817781 na SUPER_33 assembled-molecule 33 Chromosome CM107043.1 <> na Primary Assembly 40946682 na SUPER_34 assembled-molecule 34 Chromosome CM107044.1 <> na Primary Assembly 33671832 na SUPER_35 assembled-molecule 35 Chromosome CM107045.1 <> na Primary Assembly 33226122 na SUPER_36 assembled-molecule 36 Chromosome CM107046.1 <> na Primary Assembly 33582863 na SUPER_37 assembled-molecule 37 Chromosome CM107047.1 <> na Primary Assembly 34365293 na SUPER_38 assembled-molecule 38 Chromosome CM107048.1 <> na Primary Assembly 31764704 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JBLSAH010000046.1 <> na Primary Assembly 589843 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome JBLSAH010000066.1 <> na Primary Assembly 218630 na SUPER_5_unloc_3 unlocalized-scaffold 5 Chromosome JBLSAH010000044.1 <> na Primary Assembly 737305 na SUPER_5_unloc_7 unlocalized-scaffold 5 Chromosome JBLSAH010000045.1 <> na Primary Assembly 616556 na SUPER_5_unloc_8 unlocalized-scaffold 5 Chromosome JBLSAH010000047.1 <> na Primary Assembly 537553 na SUPER_5_unloc_9 unlocalized-scaffold 5 Chromosome JBLSAH010000050.1 <> na Primary Assembly 442749 na SUPER_5_unloc_1 unlocalized-scaffold 5 Chromosome JBLSAH010000063.1 <> na Primary Assembly 243961 na SUPER_5_unloc_4 unlocalized-scaffold 5 Chromosome JBLSAH010000064.1 <> na Primary Assembly 221497 na SUPER_5_unloc_5 unlocalized-scaffold 5 Chromosome JBLSAH010000073.1 <> na Primary Assembly 202721 na SUPER_5_unloc_10 unlocalized-scaffold 5 Chromosome JBLSAH010000075.1 <> na Primary Assembly 191737 na SUPER_5_unloc_6 unlocalized-scaffold 5 Chromosome JBLSAH010000080.1 <> na Primary Assembly 174840 na SUPER_5_unloc_2 unlocalized-scaffold 5 Chromosome JBLSAH010000091.1 <> na Primary Assembly 108988 na SUPER_6_unloc_3 unlocalized-scaffold 6 Chromosome JBLSAH010000056.1 <> na Primary Assembly 297743 na SUPER_6_unloc_2 unlocalized-scaffold 6 Chromosome JBLSAH010000069.1 <> na Primary Assembly 215852 na SUPER_6_unloc_4 unlocalized-scaffold 6 Chromosome JBLSAH010000074.1 <> na Primary Assembly 194347 na SUPER_6_unloc_1 unlocalized-scaffold 6 Chromosome JBLSAH010000113.1 <> na Primary Assembly 60953 na SUPER_16_unloc_8 unlocalized-scaffold 16 Chromosome JBLSAH010000041.1 <> na Primary Assembly 2506835 na SUPER_16_unloc_7 unlocalized-scaffold 16 Chromosome JBLSAH010000042.1 <> na Primary Assembly 1637256 na SUPER_16_unloc_2 unlocalized-scaffold 16 Chromosome JBLSAH010000055.1 <> na Primary Assembly 320780 na SUPER_16_unloc_10 unlocalized-scaffold 16 Chromosome JBLSAH010000059.1 <> na Primary Assembly 263985 na SUPER_16_unloc_14 unlocalized-scaffold 16 Chromosome JBLSAH010000070.1 <> na Primary Assembly 211760 na SUPER_16_unloc_4 unlocalized-scaffold 16 Chromosome JBLSAH010000082.1 <> na Primary Assembly 148137 na SUPER_16_unloc_11 unlocalized-scaffold 16 Chromosome JBLSAH010000083.1 <> na Primary Assembly 147460 na SUPER_16_unloc_12 unlocalized-scaffold 16 Chromosome JBLSAH010000092.1 <> na Primary Assembly 107985 na SUPER_16_unloc_1 unlocalized-scaffold 16 Chromosome JBLSAH010000095.1 <> na Primary Assembly 104644 na SUPER_16_unloc_13 unlocalized-scaffold 16 Chromosome JBLSAH010000096.1 <> na Primary Assembly 98355 na SUPER_16_unloc_9 unlocalized-scaffold 16 Chromosome JBLSAH010000097.1 <> na Primary Assembly 97973 na SUPER_16_unloc_5 unlocalized-scaffold 16 Chromosome JBLSAH010000115.1 <> na Primary Assembly 58661 na SUPER_16_unloc_3 unlocalized-scaffold 16 Chromosome JBLSAH010000127.1 <> na Primary Assembly 45667 na SUPER_16_unloc_6 unlocalized-scaffold 16 Chromosome JBLSAH010000155.1 <> na Primary Assembly 11601 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JBLSAH010000060.1 <> na Primary Assembly 255980 na SUPER_21_unloc_1 unlocalized-scaffold 21 Chromosome JBLSAH010000110.1 <> na Primary Assembly 67201 na SUPER_22_unloc_1 unlocalized-scaffold 22 Chromosome JBLSAH010000133.1 <> na Primary Assembly 37332 na SUPER_27_unloc_1 unlocalized-scaffold 27 Chromosome JBLSAH010000043.1 <> na Primary Assembly 795436 na SUPER_27_unloc_2 unlocalized-scaffold 27 Chromosome JBLSAH010000051.1 <> na Primary Assembly 442383 na SUPER_28_unloc_1 unlocalized-scaffold 28 Chromosome JBLSAH010000102.1 <> na Primary Assembly 82074 na SUPER_34_unloc_2 unlocalized-scaffold 34 Chromosome JBLSAH010000065.1 <> na Primary Assembly 220637 na SUPER_34_unloc_1 unlocalized-scaffold 34 Chromosome JBLSAH010000071.1 <> na Primary Assembly 209649 na SUPER_37_unloc_1 unlocalized-scaffold 37 Chromosome JBLSAH010000039.1 <> na Primary Assembly 4144268 na SUPER_37_unloc_3 unlocalized-scaffold 37 Chromosome JBLSAH010000054.1 <> na Primary Assembly 322352 na SUPER_37_unloc_4 unlocalized-scaffold 37 Chromosome JBLSAH010000057.1 <> na Primary Assembly 288110 na SUPER_37_unloc_2 unlocalized-scaffold 37 Chromosome JBLSAH010000067.1 <> na Primary Assembly 218164 na SUPER_38_unloc_3 unlocalized-scaffold 38 Chromosome JBLSAH010000040.1 <> na Primary Assembly 3174940 na SUPER_38_unloc_2 unlocalized-scaffold 38 Chromosome JBLSAH010000049.1 <> na Primary Assembly 457167 na SUPER_38_unloc_1 unlocalized-scaffold 38 Chromosome JBLSAH010000052.1 <> na Primary Assembly 422662 na Scaffold_120 unplaced-scaffold na na JBLSAH010000048.1 <> na Primary Assembly 508400 na Scaffold_111 unplaced-scaffold na na JBLSAH010000053.1 <> na Primary Assembly 326891 na Scaffold_112 unplaced-scaffold na na JBLSAH010000058.1 <> na Primary Assembly 281944 na Scaffold_110 unplaced-scaffold na na JBLSAH010000061.1 <> na Primary Assembly 245920 na Scaffold_91 unplaced-scaffold na na JBLSAH010000062.1 <> na Primary Assembly 244469 na Scaffold_92 unplaced-scaffold na na JBLSAH010000068.1 <> na Primary Assembly 216421 na Scaffold_94 unplaced-scaffold na na JBLSAH010000072.1 <> na Primary Assembly 206288 na Scaffold_95 unplaced-scaffold na na JBLSAH010000076.1 <> na Primary Assembly 191637 na Scaffold_99 unplaced-scaffold na na JBLSAH010000077.1 <> na Primary Assembly 188470 na Scaffold_90 unplaced-scaffold na na JBLSAH010000078.1 <> na Primary Assembly 187657 na Scaffold_113 unplaced-scaffold na na JBLSAH010000079.1 <> na Primary Assembly 177393 na Scaffold_100 unplaced-scaffold na na JBLSAH010000081.1 <> na Primary Assembly 174483 na Scaffold_103 unplaced-scaffold na na JBLSAH010000084.1 <> na Primary Assembly 146719 na Scaffold_82 unplaced-scaffold na na JBLSAH010000085.1 <> na Primary Assembly 140815 na Scaffold_504 unplaced-scaffold na na JBLSAH010000086.1 <> na Primary Assembly 140600 na Scaffold_106 unplaced-scaffold na na JBLSAH010000087.1 <> na Primary Assembly 138854 na Scaffold_107 unplaced-scaffold na na JBLSAH010000088.1 <> na Primary Assembly 136893 na Scaffold_118 unplaced-scaffold na na JBLSAH010000089.1 <> na Primary Assembly 123721 na Scaffold_121 unplaced-scaffold na na JBLSAH010000090.1 <> na Primary Assembly 112122 na Scaffold_515 unplaced-scaffold na na JBLSAH010000093.1 <> na Primary Assembly 107385 na Scaffold_80 unplaced-scaffold na na JBLSAH010000094.1 <> na Primary Assembly 107297 na Scaffold_519 unplaced-scaffold na na JBLSAH010000098.1 <> na Primary Assembly 97960 na Scaffold_87 unplaced-scaffold na na JBLSAH010000099.1 <> na Primary Assembly 96811 na Scaffold_97 unplaced-scaffold na na JBLSAH010000100.1 <> na Primary Assembly 91304 na Scaffold_522 unplaced-scaffold na na JBLSAH010000101.1 <> na Primary Assembly 83641 na Scaffold_524 unplaced-scaffold na na JBLSAH010000103.1 <> na Primary Assembly 78822 na Scaffold_123 unplaced-scaffold na na JBLSAH010000104.1 <> na Primary Assembly 72961 na Scaffold_526 unplaced-scaffold na na JBLSAH010000105.1 <> na Primary Assembly 70679 na Scaffold_527 unplaced-scaffold na na JBLSAH010000106.1 <> na Primary Assembly 69802 na Scaffold_528 unplaced-scaffold na na JBLSAH010000107.1 <> na Primary Assembly 68360 na Scaffold_98 unplaced-scaffold na na JBLSAH010000108.1 <> na Primary Assembly 67740 na Scaffold_530 unplaced-scaffold na na JBLSAH010000109.1 <> na Primary Assembly 67582 na Scaffold_533 unplaced-scaffold na na JBLSAH010000111.1 <> na Primary Assembly 62919 na Scaffold_124 unplaced-scaffold na na JBLSAH010000112.1 <> na Primary Assembly 62780 na Scaffold_536 unplaced-scaffold na na JBLSAH010000114.1 <> na Primary Assembly 59131 na Scaffold_538 unplaced-scaffold na na JBLSAH010000116.1 <> na Primary Assembly 56537 na Scaffold_539 unplaced-scaffold na na JBLSAH010000117.1 <> na Primary Assembly 55963 na Scaffold_88 unplaced-scaffold na na JBLSAH010000118.1 <> na Primary Assembly 55397 na Scaffold_79 unplaced-scaffold na na JBLSAH010000119.1 <> na Primary Assembly 54422 na Scaffold_542 unplaced-scaffold na na JBLSAH010000120.1 <> na Primary Assembly 54205 na Scaffold_543 unplaced-scaffold na na JBLSAH010000121.1 <> na Primary Assembly 52348 na Scaffold_544 unplaced-scaffold na na JBLSAH010000122.1 <> na Primary Assembly 52035 na Scaffold_545 unplaced-scaffold na na JBLSAH010000123.1 <> na Primary Assembly 50999 na Scaffold_89 unplaced-scaffold na na JBLSAH010000124.1 <> na Primary Assembly 50237 na Scaffold_127 unplaced-scaffold na na JBLSAH010000125.1 <> na Primary Assembly 48043 na Scaffold_548 unplaced-scaffold na na JBLSAH010000126.1 <> na Primary Assembly 46055 na Scaffold_550 unplaced-scaffold na na JBLSAH010000128.1 <> na Primary Assembly 45446 na Scaffold_551 unplaced-scaffold na na JBLSAH010000129.1 <> na Primary Assembly 41232 na Scaffold_129 unplaced-scaffold na na JBLSAH010000130.1 <> na Primary Assembly 39017 na Scaffold_553 unplaced-scaffold na na JBLSAH010000131.1 <> na Primary Assembly 38368 na Scaffold_554 unplaced-scaffold na na JBLSAH010000132.1 <> na Primary Assembly 37396 na Scaffold_556 unplaced-scaffold na na JBLSAH010000134.1 <> na Primary Assembly 36638 na Scaffold_557 unplaced-scaffold na na JBLSAH010000135.1 <> na Primary Assembly 34990 na Scaffold_558 unplaced-scaffold na na JBLSAH010000136.1 <> na Primary Assembly 34948 na Scaffold_560 unplaced-scaffold na na JBLSAH010000137.1 <> na Primary Assembly 34456 na Scaffold_561 unplaced-scaffold na na JBLSAH010000138.1 <> na Primary Assembly 32633 na Scaffold_562 unplaced-scaffold na na JBLSAH010000139.1 <> na Primary Assembly 30640 na Scaffold_563 unplaced-scaffold na na JBLSAH010000140.1 <> na Primary Assembly 30627 na Scaffold_564 unplaced-scaffold na na JBLSAH010000141.1 <> na Primary Assembly 30048 na Scaffold_565 unplaced-scaffold na na JBLSAH010000142.1 <> na Primary Assembly 28252 na Scaffold_566 unplaced-scaffold na na JBLSAH010000143.1 <> na Primary Assembly 27950 na Scaffold_567 unplaced-scaffold na na JBLSAH010000144.1 <> na Primary Assembly 25200 na Scaffold_568 unplaced-scaffold na na JBLSAH010000145.1 <> na Primary Assembly 23854 na Scaffold_569 unplaced-scaffold na na JBLSAH010000146.1 <> na Primary Assembly 23669 na Scaffold_570 unplaced-scaffold na na JBLSAH010000147.1 <> na Primary Assembly 23241 na Scaffold_571 unplaced-scaffold na na JBLSAH010000148.1 <> na Primary Assembly 20768 na Scaffold_572 unplaced-scaffold na na JBLSAH010000149.1 <> na Primary Assembly 20069 na Scaffold_573 unplaced-scaffold na na JBLSAH010000150.1 <> na Primary Assembly 19646 na Scaffold_574 unplaced-scaffold na na JBLSAH010000151.1 <> na Primary Assembly 18424 na Scaffold_575 unplaced-scaffold na na JBLSAH010000152.1 <> na Primary Assembly 16910 na Scaffold_576 unplaced-scaffold na na JBLSAH010000153.1 <> na Primary Assembly 16872 na Scaffold_577 unplaced-scaffold na na JBLSAH010000154.1 <> na Primary Assembly 14881 na