# Assembly name: SynTyp1_v1.hap2 # Organism name: Syngnathus typhle (broad-nosed pipefish) # Isolate: SK-2024d # Taxid: 161592 # BioSample: SAMN36735486 # BioProject: PRJNA1148217 # Submitter: University of Copenhagen # Date: 2025-03-03 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLUSS01 # Assembly method: Hifiasm v. 0.19; purge_dups v. 1.2.5; yahs v. 1.2a.1; samba v. 4.1.0 # Expected final version: yes # Genome coverage: 60x # Sequencing technology: HiFi; HiC # GenBank assembly accession: GCA_048301605.1 # Linked assembly: GCA_048301445.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_048301655.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM107643.1 <> na Primary Assembly 28862979 na chr2 assembled-molecule 2 Chromosome CM107644.1 <> na Primary Assembly 27475402 na chr3 assembled-molecule 3 Chromosome CM107645.1 <> na Primary Assembly 22192473 na chr4 assembled-molecule 4 Chromosome CM107646.1 <> na Primary Assembly 21105607 na chr5 assembled-molecule 5 Chromosome CM107647.1 <> na Primary Assembly 18447318 na chr6 assembled-molecule 6 Chromosome CM107648.1 <> na Primary Assembly 18280294 na chr7 assembled-molecule 7 Chromosome CM107649.1 <> na Primary Assembly 17392482 na chr8 assembled-molecule 8 Chromosome CM107650.1 <> na Primary Assembly 15395927 na chr9 assembled-molecule 9 Chromosome CM107651.1 <> na Primary Assembly 15334330 na chr10 assembled-molecule 10 Chromosome CM107652.1 <> na Primary Assembly 14875047 na chr11 assembled-molecule 11 Chromosome CM107653.1 <> na Primary Assembly 14248494 na chr12 assembled-molecule 12 Chromosome CM107654.1 <> na Primary Assembly 13131816 na chr13 assembled-molecule 13 Chromosome CM107655.1 <> na Primary Assembly 13493969 na chr14 assembled-molecule 14 Chromosome CM107656.1 <> na Primary Assembly 12654113 na chr15 assembled-molecule 15 Chromosome CM107657.1 <> na Primary Assembly 12331856 na chr16 assembled-molecule 16 Chromosome CM107658.1 <> na Primary Assembly 10762931 na chr17 assembled-molecule 17 Chromosome CM107659.1 <> na Primary Assembly 10679387 na chr18 assembled-molecule 18 Chromosome CM107660.1 <> na Primary Assembly 8947397 na chr19 assembled-molecule 19 Chromosome CM107661.1 <> na Primary Assembly 9336205 na chr20 assembled-molecule 20 Chromosome CM107662.1 <> na Primary Assembly 8919424 na chr21 assembled-molecule 21 Chromosome CM107663.1 <> na Primary Assembly 7575787 na chr22 assembled-molecule 22 Chromosome CM107664.1 <> na Primary Assembly 6931975 na scaffold_61 unplaced-scaffold na na JBLUSS010000001.1 <> na Primary Assembly 219527 na scaffold_92 unplaced-scaffold na na JBLUSS010000002.1 <> na Primary Assembly 112802 na scaffold_111 unplaced-scaffold na na JBLUSS010000003.1 <> na Primary Assembly 53980 na scaffold_110 unplaced-scaffold na na JBLUSS010000004.1 <> na Primary Assembly 55000 na scaffold_96 unplaced-scaffold na na JBLUSS010000005.1 <> na Primary Assembly 89000 na scaffold_58 unplaced-scaffold na na JBLUSS010000006.1 <> na Primary Assembly 226971 na scaffold_108 unplaced-scaffold na na JBLUSS010000008.1 <> na Primary Assembly 57678 na scaffold_72 unplaced-scaffold na na JBLUSS010000010.1 <> na Primary Assembly 171150 na scaffold_42 unplaced-scaffold na na JBLUSS010000011.1 <> na Primary Assembly 364676 na scaffold_46 unplaced-scaffold na na JBLUSS010000014.1 <> na Primary Assembly 328702 na scaffold_39 unplaced-scaffold na na JBLUSS010000015.1 <> na Primary Assembly 515305 na scaffold_89 unplaced-scaffold na na JBLUSS010000016.1 <> na Primary Assembly 128727 na scaffold_76 unplaced-scaffold na na JBLUSS010000017.1 <> na Primary Assembly 162595 na scaffold_66 unplaced-scaffold na na JBLUSS010000018.1 <> na Primary Assembly 190615 na scaffold_55 unplaced-scaffold na na JBLUSS010000020.1 <> na Primary Assembly 250972 na scaffold_120 unplaced-scaffold na na JBLUSS010000021.1 <> na Primary Assembly 38262 na scaffold_121 unplaced-scaffold na na JBLUSS010000022.1 <> na Primary Assembly 33543 na scaffold_91 unplaced-scaffold na na JBLUSS010000023.1 <> na Primary Assembly 116448 na scaffold_62 unplaced-scaffold na na JBLUSS010000024.1 <> na Primary Assembly 216715 na scaffold_83 unplaced-scaffold na na JBLUSS010000025.1 <> na Primary Assembly 136345 na scaffold_33 unplaced-scaffold na na JBLUSS010000026.1 <> na Primary Assembly 675931 na scaffold_37 unplaced-scaffold na na JBLUSS010000027.1 <> na Primary Assembly 578057 na scaffold_87 unplaced-scaffold na na JBLUSS010000028.1 <> na Primary Assembly 131615 na scaffold_106 unplaced-scaffold na na JBLUSS010000029.1 <> na Primary Assembly 64000 na scaffold_41 unplaced-scaffold na na JBLUSS010000030.1 <> na Primary Assembly 369151 na scaffold_105 unplaced-scaffold na na JBLUSS010000031.1 <> na Primary Assembly 64044 na scaffold_84 unplaced-scaffold na na JBLUSS010000032.1 <> na Primary Assembly 134151 na scaffold_71 unplaced-scaffold na na JBLUSS010000033.1 <> na Primary Assembly 173821 na scaffold_34 unplaced-scaffold na na JBLUSS010000034.1 <> na Primary Assembly 665752 na scaffold_88 unplaced-scaffold na na JBLUSS010000035.1 <> na Primary Assembly 129819 na scaffold_38 unplaced-scaffold na na JBLUSS010000036.1 <> na Primary Assembly 525907 na scaffold_126 unplaced-scaffold na na JBLUSS010000038.1 <> na Primary Assembly 1000 na scaffold_125 unplaced-scaffold na na JBLUSS010000039.1 <> na Primary Assembly 22810 na scaffold_59 unplaced-scaffold na na JBLUSS010000040.1 <> na Primary Assembly 224000 na scaffold_118 unplaced-scaffold na na JBLUSS010000041.1 <> na Primary Assembly 41000 na scaffold_100 unplaced-scaffold na na JBLUSS010000042.1 <> na Primary Assembly 79614 na scaffold_101 unplaced-scaffold na na JBLUSS010000044.1 <> na Primary Assembly 77532 na scaffold_60 unplaced-scaffold na na JBLUSS010000045.1 <> na Primary Assembly 223353 na scaffold_70 unplaced-scaffold na na JBLUSS010000048.1 <> na Primary Assembly 175001 na scaffold_115 unplaced-scaffold na na JBLUSS010000049.1 <> na Primary Assembly 51523 na scaffold_53 unplaced-scaffold na na JBLUSS010000051.1 <> na Primary Assembly 288633 na scaffold_40 unplaced-scaffold na na JBLUSS010000053.1 <> na Primary Assembly 423037 na scaffold_116 unplaced-scaffold na na JBLUSS010000054.1 <> na Primary Assembly 50000 na scaffold_26 unplaced-scaffold na na JBLUSS010000055.1 <> na Primary Assembly 1068827 na scaffold_35 unplaced-scaffold na na JBLUSS010000056.1 <> na Primary Assembly 616315 na scaffold_85 unplaced-scaffold na na JBLUSS010000057.1 <> na Primary Assembly 132514 na scaffold_90 unplaced-scaffold na na JBLUSS010000059.1 <> na Primary Assembly 126804 na scaffold_54 unplaced-scaffold na na JBLUSS010000060.1 <> na Primary Assembly 254230 na scaffold_57 unplaced-scaffold na na JBLUSS010000062.1 <> na Primary Assembly 230741 na scaffold_47 unplaced-scaffold na na JBLUSS010000063.1 <> na Primary Assembly 326332 na scaffold_28 unplaced-scaffold na na JBLUSS010000064.1 <> na Primary Assembly 1009000 na scaffold_77 unplaced-scaffold na na JBLUSS010000065.1 <> na Primary Assembly 155000 na scaffold_93 unplaced-scaffold na na JBLUSS010000066.1 <> na Primary Assembly 107171 na scaffold_44 unplaced-scaffold na na JBLUSS010000067.1 <> na Primary Assembly 361633 na scaffold_107 unplaced-scaffold na na JBLUSS010000068.1 <> na Primary Assembly 58444 na scaffold_81 unplaced-scaffold na na JBLUSS010000069.1 <> na Primary Assembly 145921 na scaffold_31 unplaced-scaffold na na JBLUSS010000070.1 <> na Primary Assembly 824485 na scaffold_74 unplaced-scaffold na na JBLUSS010000071.1 <> na Primary Assembly 165911 na scaffold_97 unplaced-scaffold na na JBLUSS010000072.1 <> na Primary Assembly 88256 na scaffold_109 unplaced-scaffold na na JBLUSS010000073.1 <> na Primary Assembly 55000 na scaffold_69 unplaced-scaffold na na JBLUSS010000074.1 <> na Primary Assembly 176974 na scaffold_50 unplaced-scaffold na na JBLUSS010000076.1 <> na Primary Assembly 308428 na scaffold_94 unplaced-scaffold na na JBLUSS010000077.1 <> na Primary Assembly 97889 na scaffold_43 unplaced-scaffold na na JBLUSS010000078.1 <> na Primary Assembly 361697 na scaffold_73 unplaced-scaffold na na JBLUSS010000079.1 <> na Primary Assembly 166208 na scaffold_104 unplaced-scaffold na na JBLUSS010000081.1 <> na Primary Assembly 64237 na scaffold_102 unplaced-scaffold na na JBLUSS010000082.1 <> na Primary Assembly 74649 na scaffold_63 unplaced-scaffold na na JBLUSS010000083.1 <> na Primary Assembly 216594 na scaffold_82 unplaced-scaffold na na JBLUSS010000084.1 <> na Primary Assembly 142924 na scaffold_32 unplaced-scaffold na na JBLUSS010000085.1 <> na Primary Assembly 687219 na scaffold_79 unplaced-scaffold na na JBLUSS010000086.1 <> na Primary Assembly 152476 na scaffold_25 unplaced-scaffold na na JBLUSS010000087.1 <> na Primary Assembly 1081357 na scaffold_86 unplaced-scaffold na na JBLUSS010000088.1 <> na Primary Assembly 131935 na scaffold_36 unplaced-scaffold na na JBLUSS010000089.1 <> na Primary Assembly 609015 na scaffold_49 unplaced-scaffold na na JBLUSS010000090.1 <> na Primary Assembly 310791 na scaffold_103 unplaced-scaffold na na JBLUSS010000091.1 <> na Primary Assembly 66318 na scaffold_64 unplaced-scaffold na na JBLUSS010000092.1 <> na Primary Assembly 199632 na scaffold_67 unplaced-scaffold na na JBLUSS010000093.1 <> na Primary Assembly 188000 na scaffold_99 unplaced-scaffold na na JBLUSS010000094.1 <> na Primary Assembly 80214 na scaffold_114 unplaced-scaffold na na JBLUSS010000096.1 <> na Primary Assembly 52000 na scaffold_51 unplaced-scaffold na na JBLUSS010000097.1 <> na Primary Assembly 305195 na scaffold_95 unplaced-scaffold na na JBLUSS010000098.1 <> na Primary Assembly 97000 na scaffold_119 unplaced-scaffold na na JBLUSS010000099.1 <> na Primary Assembly 40911 na scaffold_68 unplaced-scaffold na na JBLUSS010000100.1 <> na Primary Assembly 179125 na scaffold_122 unplaced-scaffold na na JBLUSS010000101.1 <> na Primary Assembly 30055 na scaffold_80 unplaced-scaffold na na JBLUSS010000102.1 <> na Primary Assembly 150126 na scaffold_30 unplaced-scaffold na na JBLUSS010000103.1 <> na Primary Assembly 955162 na scaffold_45 unplaced-scaffold na na JBLUSS010000105.1 <> na Primary Assembly 334940 na scaffold_75 unplaced-scaffold na na JBLUSS010000106.1 <> na Primary Assembly 164377 na scaffold_29 unplaced-scaffold na na JBLUSS010000107.1 <> na Primary Assembly 990000 na scaffold_123 unplaced-scaffold na na JBLUSS010000108.1 <> na Primary Assembly 26244 na scaffold_65 unplaced-scaffold na na JBLUSS010000109.1 <> na Primary Assembly 195247 na scaffold_98 unplaced-scaffold na na JBLUSS010000111.1 <> na Primary Assembly 81404 na scaffold_56 unplaced-scaffold na na JBLUSS010000112.1 <> na Primary Assembly 239000 na scaffold_52 unplaced-scaffold na na JBLUSS010000114.1 <> na Primary Assembly 289663 na scaffold_23 unplaced-scaffold na na JBLUSS010000115.1 <> na Primary Assembly 1372375 na scaffold_124 unplaced-scaffold na na JBLUSS010000118.1 <> na Primary Assembly 25873 na scaffold_113 unplaced-scaffold na na JBLUSS010000119.1 <> na Primary Assembly 53000 na scaffold_27 unplaced-scaffold na na JBLUSS010000120.1 <> na Primary Assembly 1043242 na scaffold_78 unplaced-scaffold na na JBLUSS010000121.1 <> na Primary Assembly 152732 na scaffold_48 unplaced-scaffold na na JBLUSS010000122.1 <> na Primary Assembly 313801 na scaffold_24 unplaced-scaffold na na JBLUSS010000123.1 <> na Primary Assembly 1338041 na scaffold_112 unplaced-scaffold na na JBLUSS010000125.1 <> na Primary Assembly 53054 na