# Assembly name: fCoiMys1.hap2 # Organism name: Coilia mystus (Osbeck's grenadier anchovy) # Infraspecific name: ecotype=Shantou # Isolate: fCoiMys1 # Sex: female # Taxid: 286537 # BioSample: SAMN46980313 # BioProject: PRJNA1229000 # Submitter: University of Copenhagen # Date: 2025-03-11 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLZWO01 # Assembly method: hifiasm v. 0.19.9; purge_dups v. 1.2.5; arima_mapping_pipeline v. 2019-08-02; yahs v. 1.2a.1 # Expected final version: yes # Genome coverage: 47.3x # Sequencing technology: PacBio HiFi; Hi-C # RefSeq category: Reference Genome # GenBank assembly accession: GCA_048544225.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_048544305.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_1 assembled-molecule 1 Chromosome CM108836.1 <> na Primary Assembly 39114416 na scaffold_6 assembled-molecule 2 Chromosome CM108837.1 <> na Primary Assembly 38197387 na scaffold_4 assembled-molecule 3 Chromosome CM108838.1 <> na Primary Assembly 36725188 na scaffold_2 assembled-molecule 4 Chromosome CM108839.1 <> na Primary Assembly 36274753 na scaffold_8 assembled-molecule 5 Chromosome CM108840.1 <> na Primary Assembly 36085422 na scaffold_5 assembled-molecule 6 Chromosome CM108841.1 <> na Primary Assembly 36055676 na scaffold_3 assembled-molecule 7 Chromosome CM108842.1 <> na Primary Assembly 35894600 na scaffold_12 assembled-molecule 8 Chromosome CM108843.1 <> na Primary Assembly 35488788 na scaffold_7 assembled-molecule 9 Chromosome CM108844.1 <> na Primary Assembly 35472929 na scaffold_9 assembled-molecule 10 Chromosome CM108845.1 <> na Primary Assembly 35291789 na scaffold_17 assembled-molecule 11 Chromosome CM108846.1 <> na Primary Assembly 34984248 na scaffold_21 assembled-molecule 12 Chromosome CM108847.1 <> na Primary Assembly 34692851 na scaffold_14 assembled-molecule 13 Chromosome CM108848.1 <> na Primary Assembly 34546749 na scaffold_11 assembled-molecule 14 Chromosome CM108849.1 <> na Primary Assembly 34519689 na scaffold_19 assembled-molecule 15 Chromosome CM108850.1 <> na Primary Assembly 34462937 na scaffold_10 assembled-molecule 16 Chromosome CM108851.1 <> na Primary Assembly 34307939 na scaffold_16 assembled-molecule 17 Chromosome CM108852.1 <> na Primary Assembly 33964012 na scaffold_13 assembled-molecule 18 Chromosome CM108853.1 <> na Primary Assembly 33458165 na scaffold_15 assembled-molecule 19 Chromosome CM108854.1 <> na Primary Assembly 32675015 na scaffold_20 assembled-molecule 20 Chromosome CM108855.1 <> na Primary Assembly 30878253 na scaffold_23 assembled-molecule 21 Chromosome CM108856.1 <> na Primary Assembly 29900257 na scaffold_22 assembled-molecule 22 Chromosome CM108857.1 <> na Primary Assembly 29318430 na scaffold_18 assembled-molecule 23 Chromosome CM108858.1 <> na Primary Assembly 29316485 na scaffold_24 assembled-molecule Z Chromosome CM108859.1 <> na Primary Assembly 45051600 na scaffold_132 unplaced-scaffold na na JBLZWO010000001.1 <> na Primary Assembly 104161 na scaffold_60 unplaced-scaffold na na JBLZWO010000002.1 <> na Primary Assembly 35095 na scaffold_153 unplaced-scaffold na na JBLZWO010000003.1 <> na Primary Assembly 96822 na scaffold_162 unplaced-scaffold na na JBLZWO010000004.1 <> na Primary Assembly 76140 na scaffold_81 unplaced-scaffold na na JBLZWO010000006.1 <> na Primary Assembly 24229 na scaffold_128 unplaced-scaffold na na JBLZWO010000007.1 <> na Primary Assembly 99972 na scaffold_171 unplaced-scaffold na na JBLZWO010000008.1 <> na Primary Assembly 62664 na scaffold_111 unplaced-scaffold na na JBLZWO010000009.1 <> na Primary Assembly 130866 na scaffold_123 unplaced-scaffold na na JBLZWO010000011.1 <> na Primary Assembly 58476 na scaffold_177 unplaced-scaffold na na JBLZWO010000012.1 <> na Primary Assembly 62343 na scaffold_158 unplaced-scaffold na na JBLZWO010000013.1 <> na Primary Assembly 58542 na scaffold_117 unplaced-scaffold na na JBLZWO010000015.1 <> na Primary Assembly 191118 na scaffold_167 unplaced-scaffold na na JBLZWO010000018.1 <> na Primary Assembly 74046 na scaffold_99 unplaced-scaffold na na JBLZWO010000019.1 <> na Primary Assembly 1000 na scaffold_48 unplaced-scaffold na na JBLZWO010000021.1 <> na Primary Assembly 39571 na scaffold_137 unplaced-scaffold na na JBLZWO010000022.1 <> na Primary Assembly 67428 na scaffold_185 unplaced-scaffold na na JBLZWO010000023.1 <> na Primary Assembly 242752 na scaffold_78 unplaced-scaffold na na JBLZWO010000024.1 <> na Primary Assembly 26175 na scaffold_146 unplaced-scaffold na na JBLZWO010000025.1 <> na Primary Assembly 164606 na scaffold_184 unplaced-scaffold na na JBLZWO010000027.1 <> na Primary Assembly 136404 na scaffold_39 unplaced-scaffold na na JBLZWO010000029.1 <> na Primary Assembly 43384 na scaffold_58 unplaced-scaffold na na JBLZWO010000030.1 <> na Primary Assembly 35149 na scaffold_65 unplaced-scaffold na na JBLZWO010000031.1 <> na Primary Assembly 33578 na scaffold_103 unplaced-scaffold na na JBLZWO010000032.1 <> na Primary Assembly 1000 na scaffold_131 unplaced-scaffold na na JBLZWO010000033.1 <> na Primary Assembly 77883 na scaffold_25 unplaced-scaffold na na JBLZWO010000034.1 <> na Primary Assembly 6061296 na scaffold_108 unplaced-scaffold na na JBLZWO010000035.1 <> na Primary Assembly 94000 na scaffold_144 unplaced-scaffold na na JBLZWO010000036.1 <> na Primary Assembly 53527 na scaffold_54 unplaced-scaffold na na JBLZWO010000037.1 <> na Primary Assembly 37450 na scaffold_83 unplaced-scaffold na na JBLZWO010000038.1 <> na Primary Assembly 23233 na scaffold_161 unplaced-scaffold na na JBLZWO010000039.1 <> na Primary Assembly 78369 na scaffold_62 unplaced-scaffold na na JBLZWO010000040.1 <> na Primary Assembly 34221 na scaffold_172 unplaced-scaffold na na JBLZWO010000041.1 <> na Primary Assembly 67209 na scaffold_112 unplaced-scaffold na na JBLZWO010000042.1 <> na Primary Assembly 143000 na scaffold_44 unplaced-scaffold na na JBLZWO010000043.1 <> na Primary Assembly 40668 na scaffold_74 unplaced-scaffold na na JBLZWO010000044.1 <> na Primary Assembly 29977 na scaffold_186 unplaced-scaffold na na JBLZWO010000045.1 <> na Primary Assembly 147908 na scaffold_145 unplaced-scaffold na na JBLZWO010000046.1 <> na Primary Assembly 78418 na scaffold_160 unplaced-scaffold na na JBLZWO010000047.1 <> na Primary Assembly 87303 na scaffold_169 unplaced-scaffold na na JBLZWO010000048.1 <> na Primary Assembly 71639 na scaffold_143 unplaced-scaffold na na JBLZWO010000049.1 <> na Primary Assembly 69628 na scaffold_37 unplaced-scaffold na na JBLZWO010000050.1 <> na Primary Assembly 44658 na scaffold_31 unplaced-scaffold na na JBLZWO010000051.1 <> na Primary Assembly 48143 na scaffold_139 unplaced-scaffold na na JBLZWO010000052.1 <> na Primary Assembly 77699 na scaffold_130 unplaced-scaffold na na JBLZWO010000053.1 <> na Primary Assembly 80338 na scaffold_106 unplaced-scaffold na na JBLZWO010000054.1 <> na Primary Assembly 84667 na scaffold_97 unplaced-scaffold na na JBLZWO010000055.1 <> na Primary Assembly 1000 na scaffold_91 unplaced-scaffold na na JBLZWO010000056.1 <> na Primary Assembly 7000 na scaffold_105 unplaced-scaffold na na JBLZWO010000058.1 <> na Primary Assembly 85822 na scaffold_70 unplaced-scaffold na na JBLZWO010000059.1 <> na Primary Assembly 32110 na scaffold_40 unplaced-scaffold na na JBLZWO010000060.1 <> na Primary Assembly 42966 na scaffold_183 unplaced-scaffold na na JBLZWO010000062.1 <> na Primary Assembly 55218 na scaffold_50 unplaced-scaffold na na JBLZWO010000063.1 <> na Primary Assembly 38815 na scaffold_104 unplaced-scaffold na na JBLZWO010000064.1 <> na Primary Assembly 1000 na scaffold_148 unplaced-scaffold na na JBLZWO010000065.1 <> na Primary Assembly 151514 na scaffold_124 unplaced-scaffold na na JBLZWO010000067.1 <> na Primary Assembly 67000 na scaffold_156 unplaced-scaffold na na JBLZWO010000068.1 <> na Primary Assembly 96454 na scaffold_89 unplaced-scaffold na na JBLZWO010000069.1 <> na Primary Assembly 16512 na scaffold_52 unplaced-scaffold na na JBLZWO010000070.1 <> na Primary Assembly 37826 na scaffold_64 unplaced-scaffold na na JBLZWO010000072.1 <> na Primary Assembly 34044 na scaffold_28 unplaced-scaffold na na JBLZWO010000073.1 <> na Primary Assembly 49027 na scaffold_42 unplaced-scaffold na na JBLZWO010000074.1 <> na Primary Assembly 41895 na scaffold_72 unplaced-scaffold na na JBLZWO010000075.1 <> na Primary Assembly 30581 na scaffold_125 unplaced-scaffold na na JBLZWO010000076.1 <> na Primary Assembly 54000 na scaffold_55 unplaced-scaffold na na JBLZWO010000077.1 <> na Primary Assembly 36817 na scaffold_96 unplaced-scaffold na na JBLZWO010000078.1 <> na Primary Assembly 2000 na scaffold_68 unplaced-scaffold na na JBLZWO010000079.1 <> na Primary Assembly 32839 na scaffold_126 unplaced-scaffold na na JBLZWO010000081.1 <> na Primary Assembly 55000 na scaffold_154 unplaced-scaffold na na JBLZWO010000082.1 <> na Primary Assembly 108239 na scaffold_93 unplaced-scaffold na na JBLZWO010000083.1 <> na Primary Assembly 3000 na scaffold_119 unplaced-scaffold na na JBLZWO010000084.1 <> na Primary Assembly 169559 na scaffold_110 unplaced-scaffold na na JBLZWO010000085.1 <> na Primary Assembly 49156 na scaffold_45 unplaced-scaffold na na JBLZWO010000086.1 <> na Primary Assembly 28109 na scaffold_179 unplaced-scaffold na na JBLZWO010000087.1 <> na Primary Assembly 59953 na scaffold_36 unplaced-scaffold na na JBLZWO010000088.1 <> na Primary Assembly 45186 na scaffold_170 unplaced-scaffold na na JBLZWO010000089.1 <> na Primary Assembly 68931 na scaffold_75 unplaced-scaffold na na JBLZWO010000090.1 <> na Primary Assembly 28828 na scaffold_155 unplaced-scaffold na na JBLZWO010000091.1 <> na Primary Assembly 107709 na scaffold_33 unplaced-scaffold na na JBLZWO010000093.1 <> na Primary Assembly 46028 na scaffold_88 unplaced-scaffold na na JBLZWO010000094.1 <> na Primary Assembly 19195 na scaffold_32 unplaced-scaffold na na JBLZWO010000095.1 <> na Primary Assembly 46124 na scaffold_109 unplaced-scaffold na na JBLZWO010000096.1 <> na Primary Assembly 107000 na scaffold_181 unplaced-scaffold na na JBLZWO010000097.1 <> na Primary Assembly 59188 na scaffold_100 unplaced-scaffold na na JBLZWO010000098.1 <> na Primary Assembly 1000 na scaffold_147 unplaced-scaffold na na JBLZWO010000099.1 <> na Primary Assembly 164078 na scaffold_92 unplaced-scaffold na na JBLZWO010000100.1 <> na Primary Assembly 3000 na scaffold_136 unplaced-scaffold na na JBLZWO010000101.1 <> na Primary Assembly 153654 na scaffold_29 unplaced-scaffold na na JBLZWO010000102.1 <> na Primary Assembly 48795 na scaffold_166 unplaced-scaffold na na JBLZWO010000104.1 <> na Primary Assembly 75056 na scaffold_43 unplaced-scaffold na na JBLZWO010000105.1 <> na Primary Assembly 41023 na scaffold_73 unplaced-scaffold na na JBLZWO010000106.1 <> na Primary Assembly 30275 na scaffold_187 unplaced-scaffold na na JBLZWO010000107.1 <> na Primary Assembly 50457 na scaffold_135 unplaced-scaffold na na JBLZWO010000108.1 <> na Primary Assembly 316139 na scaffold_76 unplaced-scaffold na na JBLZWO010000109.1 <> na Primary Assembly 28572 na scaffold_165 unplaced-scaffold na na JBLZWO010000110.1 <> na Primary Assembly 75000 na scaffold_46 unplaced-scaffold na na JBLZWO010000111.1 <> na Primary Assembly 40058 na scaffold_35 unplaced-scaffold na na JBLZWO010000112.1 <> na Primary Assembly 45565 na scaffold_69 unplaced-scaffold na na JBLZWO010000113.1 <> na Primary Assembly 32692 na scaffold_84 unplaced-scaffold na na JBLZWO010000114.1 <> na Primary Assembly 21513 na scaffold_164 unplaced-scaffold na na JBLZWO010000115.1 <> na Primary Assembly 76272 na scaffold_53 unplaced-scaffold na na JBLZWO010000118.1 <> na Primary Assembly 37763 na scaffold_141 unplaced-scaffold na na JBLZWO010000119.1 <> na Primary Assembly 522534 na scaffold_134 unplaced-scaffold na na JBLZWO010000120.1 <> na Primary Assembly 87038 na scaffold_95 unplaced-scaffold na na JBLZWO010000121.1 <> na Primary Assembly 2000 na scaffold_56 unplaced-scaffold na na JBLZWO010000122.1 <> na Primary Assembly 36219 na scaffold_114 unplaced-scaffold na na JBLZWO010000123.1 <> na Primary Assembly 322000 na scaffold_174 unplaced-scaffold na na JBLZWO010000124.1 <> na Primary Assembly 66413 na scaffold_57 unplaced-scaffold na na JBLZWO010000126.1 <> na Primary Assembly 36004 na scaffold_51 unplaced-scaffold na na JBLZWO010000128.1 <> na Primary Assembly 38057 na scaffold_41 unplaced-scaffold na na JBLZWO010000129.1 <> na Primary Assembly 42249 na scaffold_142 unplaced-scaffold na na JBLZWO010000130.1 <> na Primary Assembly 75860 na scaffold_71 unplaced-scaffold na na JBLZWO010000131.1 <> na Primary Assembly 30589 na scaffold_115 unplaced-scaffold na na JBLZWO010000132.1 <> na Primary Assembly 303410 na scaffold_175 unplaced-scaffold na na JBLZWO010000133.1 <> na Primary Assembly 55835 na scaffold_77 unplaced-scaffold na na JBLZWO010000134.1 <> na Primary Assembly 27968 na scaffold_159 unplaced-scaffold na na JBLZWO010000135.1 <> na Primary Assembly 50384 na scaffold_150 unplaced-scaffold na na JBLZWO010000136.1 <> na Primary Assembly 117836 na scaffold_47 unplaced-scaffold na na JBLZWO010000137.1 <> na Primary Assembly 39943 na scaffold_182 unplaced-scaffold na na JBLZWO010000138.1 <> na Primary Assembly 57399 na scaffold_116 unplaced-scaffold na na JBLZWO010000139.1 <> na Primary Assembly 191244 na scaffold_90 unplaced-scaffold na na JBLZWO010000140.1 <> na Primary Assembly 15290 na scaffold_176 unplaced-scaffold na na JBLZWO010000141.1 <> na Primary Assembly 62725 na scaffold_129 unplaced-scaffold na na JBLZWO010000142.1 <> na Primary Assembly 100745 na scaffold_120 unplaced-scaffold na na JBLZWO010000143.1 <> na Primary Assembly 57000 na scaffold_30 unplaced-scaffold na na JBLZWO010000144.1 <> na Primary Assembly 48296 na scaffold_66 unplaced-scaffold na na JBLZWO010000145.1 <> na Primary Assembly 33339 na scaffold_98 unplaced-scaffold na na JBLZWO010000146.1 <> na Primary Assembly 1000 na scaffold_49 unplaced-scaffold na na JBLZWO010000147.1 <> na Primary Assembly 39072 na scaffold_102 unplaced-scaffold na na JBLZWO010000148.1 <> na Primary Assembly 1000 na scaffold_63 unplaced-scaffold na na JBLZWO010000149.1 <> na Primary Assembly 34065 na scaffold_82 unplaced-scaffold na na JBLZWO010000151.1 <> na Primary Assembly 23810 na scaffold_38 unplaced-scaffold na na JBLZWO010000152.1 <> na Primary Assembly 43981 na scaffold_59 unplaced-scaffold na na JBLZWO010000153.1 <> na Primary Assembly 35118 na scaffold_121 unplaced-scaffold na na JBLZWO010000154.1 <> na Primary Assembly 56054 na scaffold_178 unplaced-scaffold na na JBLZWO010000155.1 <> na Primary Assembly 60508 na scaffold_157 unplaced-scaffold na na JBLZWO010000156.1 <> na Primary Assembly 93161 na scaffold_118 unplaced-scaffold na na JBLZWO010000158.1 <> na Primary Assembly 170000 na scaffold_173 unplaced-scaffold na na JBLZWO010000159.1 <> na Primary Assembly 67068 na scaffold_34 unplaced-scaffold na na JBLZWO010000160.1 <> na Primary Assembly 45612 na scaffold_113 unplaced-scaffold na na JBLZWO010000161.1 <> na Primary Assembly 143000 na scaffold_151 unplaced-scaffold na na JBLZWO010000162.1 <> na Primary Assembly 115773 na scaffold_127 unplaced-scaffold na na JBLZWO010000164.1 <> na Primary Assembly 60071 na scaffold_94 unplaced-scaffold na na JBLZWO010000165.1 <> na Primary Assembly 2000 na scaffold_85 unplaced-scaffold na na JBLZWO010000166.1 <> na Primary Assembly 20000 na scaffold_26 unplaced-scaffold na na JBLZWO010000167.1 <> na Primary Assembly 54154 na scaffold_107 unplaced-scaffold na na JBLZWO010000169.1 <> na Primary Assembly 93000 na scaffold_27 unplaced-scaffold na na JBLZWO010000170.1 <> na Primary Assembly 50075 na scaffold_152 unplaced-scaffold na na JBLZWO010000171.1 <> na Primary Assembly 111503 na scaffold_163 unplaced-scaffold na na JBLZWO010000172.1 <> na Primary Assembly 77062 na scaffold_149 unplaced-scaffold na na JBLZWO010000173.1 <> na Primary Assembly 127732 na scaffold_140 unplaced-scaffold na na JBLZWO010000174.1 <> na Primary Assembly 197710 na scaffold_133 unplaced-scaffold na na JBLZWO010000175.1 <> na Primary Assembly 102654 na scaffold_138 unplaced-scaffold na na JBLZWO010000176.1 <> na Primary Assembly 494305 na scaffold_101 unplaced-scaffold na na JBLZWO010000177.1 <> na Primary Assembly 1000 na scaffold_180 unplaced-scaffold na na JBLZWO010000178.1 <> na Primary Assembly 59278 na scaffold_168 unplaced-scaffold na na JBLZWO010000180.1 <> na Primary Assembly 72507 na scaffold_80 unplaced-scaffold na na JBLZWO010000181.1 <> na Primary Assembly 24249 na scaffold_61 unplaced-scaffold na na JBLZWO010000182.1 <> na Primary Assembly 34567 na scaffold_67 unplaced-scaffold na na JBLZWO010000183.1 <> na Primary Assembly 33294 na scaffold_122 unplaced-scaffold na na JBLZWO010000184.1 <> na Primary Assembly 59000 na