# Assembly name: mSaiBol1.pri # Organism name: Saimiri boliviensis (Bolivian squirrel monkey) # Isolate: mSaiBol1 # Sex: male # Taxid: 27679 # BioSample: SAMN46760316 # BioProject: PRJNA1221990 # Submitter: Vertebrate Genomes Project # Date: 2025-03-12 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBLWOU01 # Assembly method: Hifiasm + Hi-C phasing v. 0.18.8 + galaxy1; yahs v. 1.2a.2 + galaxy1 # Expected final version: no # Genome coverage: 34.8x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 from mSaiBol1 # GenBank assembly accession: GCA_048565385.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_048565395.1 Primary Assembly ## GCA_048565405.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM109009.1 <> na Primary Assembly 302010752 na SUPER_2 assembled-molecule 2 Chromosome CM109010.1 <> na Primary Assembly 241270144 na SUPER_3 assembled-molecule 3 Chromosome CM109011.1 <> na Primary Assembly 181099931 na SUPER_4 assembled-molecule 4 Chromosome CM109012.1 <> na Primary Assembly 167606946 na SUPER_5 assembled-molecule 5 Chromosome CM109013.1 <> na Primary Assembly 156753114 na SUPER_6 assembled-molecule 6 Chromosome CM109014.1 <> na Primary Assembly 133896789 na SUPER_7 assembled-molecule 7 Chromosome CM109015.1 <> na Primary Assembly 129414808 na SUPER_8 assembled-molecule 8 Chromosome CM109016.1 <> na Primary Assembly 129217376 na SUPER_9 assembled-molecule 9 Chromosome CM109017.1 <> na Primary Assembly 127517855 na SUPER_10 assembled-molecule 10 Chromosome CM109018.1 <> na Primary Assembly 124232735 na SUPER_11 assembled-molecule 11 Chromosome CM109019.1 <> na Primary Assembly 123845091 na SUPER_12 assembled-molecule 12 Chromosome CM109020.1 <> na Primary Assembly 117451307 na SUPER_13 assembled-molecule 13 Chromosome CM109021.1 <> na Primary Assembly 114437647 na SUPER_14 assembled-molecule 14 Chromosome CM109022.1 <> na Primary Assembly 95953937 na SUPER_15 assembled-molecule 15 Chromosome CM109023.1 <> na Primary Assembly 92579294 na SUPER_16 assembled-molecule 16 Chromosome CM109024.1 <> na Primary Assembly 88606693 na SUPER_17 assembled-molecule 17 Chromosome CM109025.1 <> na Primary Assembly 72674001 na SUPER_18 assembled-molecule 18 Chromosome CM109026.1 <> na Primary Assembly 49473147 na SUPER_19 assembled-molecule 19 Chromosome CM109027.1 <> na Primary Assembly 46583126 na SUPER_20 assembled-molecule 20 Chromosome CM109028.1 <> na Primary Assembly 41966251 na SUPER_21 assembled-molecule 21 Chromosome CM109029.1 <> na Primary Assembly 37265639 na SUPER_X assembled-molecule X Chromosome CM109030.1 <> na Primary Assembly 137536605 na SUPER_Y assembled-molecule Y Chromosome CM109031.1 <> na Primary Assembly 23051282 na SUPER_1_unloc_4 unlocalized-scaffold 1 Chromosome JBLWOU010000032.1 <> na Primary Assembly 503447 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome JBLWOU010000039.1 <> na Primary Assembly 92414 na SUPER_1_unloc_3 unlocalized-scaffold 1 Chromosome JBLWOU010000041.1 <> na Primary Assembly 80644 na SUPER_1_unloc_2 unlocalized-scaffold 1 Chromosome JBLWOU010000042.1 <> na Primary Assembly 59381 na SUPER_2_unloc_4 unlocalized-scaffold 2 Chromosome JBLWOU010000033.1 <> na Primary Assembly 419539 na SUPER_2_unloc_1 unlocalized-scaffold 2 Chromosome JBLWOU010000044.1 <> na Primary Assembly 50916 na SUPER_2_unloc_2 unlocalized-scaffold 2 Chromosome JBLWOU010000049.1 <> na Primary Assembly 39434 na SUPER_2_unloc_3 unlocalized-scaffold 2 Chromosome JBLWOU010000052.1 <> na Primary Assembly 37946 na SUPER_3_unloc_3 unlocalized-scaffold 3 Chromosome JBLWOU010000037.1 <> na Primary Assembly 305942 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JBLWOU010000038.1 <> na Primary Assembly 223751 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome JBLWOU010000045.1 <> na Primary Assembly 48930 na SUPER_9_unloc_1 unlocalized-scaffold 9 Chromosome JBLWOU010000035.1 <> na Primary Assembly 335631 na SUPER_11_unloc_1 unlocalized-scaffold 11 Chromosome JBLWOU010000061.1 <> na Primary Assembly 23126 na SUPER_12_unloc_1 unlocalized-scaffold 12 Chromosome JBLWOU010000034.1 <> na Primary Assembly 367982 na SUPER_12_unloc_2 unlocalized-scaffold 12 Chromosome JBLWOU010000040.1 <> na Primary Assembly 83907 na SUPER_16_unloc_2 unlocalized-scaffold 16 Chromosome JBLWOU010000028.1 <> na Primary Assembly 1152570 na SUPER_16_unloc_1 unlocalized-scaffold 16 Chromosome JBLWOU010000030.1 <> na Primary Assembly 730796 na SUPER_16_unloc_3 unlocalized-scaffold 16 Chromosome JBLWOU010000036.1 <> na Primary Assembly 334849 na SUPER_19_unloc_1 unlocalized-scaffold 19 Chromosome JBLWOU010000025.1 <> na Primary Assembly 2725531 na SUPER_19_unloc_2 unlocalized-scaffold 19 Chromosome JBLWOU010000026.1 <> na Primary Assembly 1751286 na SUPER_19_unloc_4 unlocalized-scaffold 19 Chromosome JBLWOU010000027.1 <> na Primary Assembly 1562758 na SUPER_19_unloc_3 unlocalized-scaffold 19 Chromosome JBLWOU010000029.1 <> na Primary Assembly 1038801 na SUPER_19_unloc_5 unlocalized-scaffold 19 Chromosome JBLWOU010000031.1 <> na Primary Assembly 503604 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome JBLWOU010000055.1 <> na Primary Assembly 30380 na Scaffold_25 unplaced-scaffold na na JBLWOU010000043.1 <> na Primary Assembly 58760 na Scaffold_26 unplaced-scaffold na na JBLWOU010000046.1 <> na Primary Assembly 47041 na Scaffold_27 unplaced-scaffold na na JBLWOU010000047.1 <> na Primary Assembly 42685 na Scaffold_28 unplaced-scaffold na na JBLWOU010000048.1 <> na Primary Assembly 40124 na Scaffold_29 unplaced-scaffold na na JBLWOU010000050.1 <> na Primary Assembly 38672 na Scaffold_30 unplaced-scaffold na na JBLWOU010000051.1 <> na Primary Assembly 38591 na Scaffold_31 unplaced-scaffold na na JBLWOU010000053.1 <> na Primary Assembly 35328 na Scaffold_32 unplaced-scaffold na na JBLWOU010000054.1 <> na Primary Assembly 33654 na Scaffold_33 unplaced-scaffold na na JBLWOU010000056.1 <> na Primary Assembly 29222 na Scaffold_34 unplaced-scaffold na na JBLWOU010000057.1 <> na Primary Assembly 29003 na Scaffold_35 unplaced-scaffold na na JBLWOU010000058.1 <> na Primary Assembly 27538 na Scaffold_36 unplaced-scaffold na na JBLWOU010000059.1 <> na Primary Assembly 25343 na Scaffold_37 unplaced-scaffold na na JBLWOU010000060.1 <> na Primary Assembly 23902 na Scaffold_38 unplaced-scaffold na na JBLWOU010000062.1 <> na Primary Assembly 21229 na Scaffold_39 unplaced-scaffold na na JBLWOU010000063.1 <> na Primary Assembly 20841 na atg000004l_rotated assembled-molecule MT Mitochondrion CM109032.1 <> na non-nuclear 16472 na