# Assembly name:  rPodUni1.pri
# Organism name:  Podocnemis unifilis (yellow-spotted Amazon River turtle)
# Isolate:  rPodUni1
# Sex:  male
# Taxid:          227871
# BioSample:      SAMN47848212
# BioProject:     PRJNA1248030
# Submitter:      Vertebrate Genomes Project
# Date:           2025-04-29
# Assembly type:  haploid (principal pseudohaplotype of diploid)
# Release type:   major
# Assembly level: Chromosome
# Genome representation: full
# WGS project:    JBNCFJ01
# Assembly method: FALCON v. 1.8.1; FALCON-Unzip v. 1.3.7; purge_dups v. 1.2.3; Scaff10x v. 4.2; Bionano Solve v. 1.6.1; Salsa2 v. 2.3; Gap closing with gcpp v. 2.0.2; Polishing with 10x reads and freebayes v. 1.3.2; Hapcut2 v. git commit 1ee1d58; whatshap v. 1.6; freebayes v. 1.3.2
# Expected final version: no
# Genome coverage: 66.0x
# Sequencing technology: PacBio CLR; Arima Hi-C; 10X-linked reads; Bionano optical mapping (Saphyr)
# RefSeq category: Reference Genome
# GenBank assembly accession: GCA_050000005.1
# Linked assembly: GCA_050000025.1 (alternate pseudohaplotype of diploid)
#
## Assembly-Units:
## GenBank Unit Accession	RefSeq Unit Accession	Assembly-Unit name
## GCA_050000015.1		Primary Assembly
#
# Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by
# unlocalized scaffolds.
# Unplaced scaffolds are listed at the end.
# RefSeq is equal or derived from GenBank object.
#
# Sequence-Name	Sequence-Role	Assigned-Molecule	Assigned-Molecule-Location/Type	GenBank-Accn	Relationship	RefSeq-Accn	Assembly-Unit	Sequence-Length	UCSC-style-name
SUPER_1	assembled-molecule	1	Chromosome	CM113745.1	<>	na	Primary Assembly	315283406	na
SUPER_2	assembled-molecule	2	Chromosome	CM113746.1	<>	na	Primary Assembly	238870614	na
SUPER_3	assembled-molecule	3	Chromosome	CM113747.1	<>	na	Primary Assembly	200588803	na
SUPER_4	assembled-molecule	4	Chromosome	CM113748.1	<>	na	Primary Assembly	127302738	na
SUPER_5	assembled-molecule	5	Chromosome	CM113749.1	<>	na	Primary Assembly	118569001	na
SUPER_6	assembled-molecule	6	Chromosome	CM113750.1	<>	na	Primary Assembly	112827270	na
SUPER_7	assembled-molecule	7	Chromosome	CM113751.1	<>	na	Primary Assembly	79110631	na
SUPER_8	assembled-molecule	8	Chromosome	CM113752.1	<>	na	Primary Assembly	63372439	na
SUPER_9	assembled-molecule	9	Chromosome	CM113753.1	<>	na	Primary Assembly	56615500	na
SUPER_10	assembled-molecule	10	Chromosome	CM113754.1	<>	na	Primary Assembly	55513303	na
SUPER_11	assembled-molecule	11	Chromosome	CM113755.1	<>	na	Primary Assembly	52076113	na
SUPER_12	assembled-molecule	12	Chromosome	CM113756.1	<>	na	Primary Assembly	43164653	na
SUPER_13	assembled-molecule	13	Chromosome	CM113757.1	<>	na	Primary Assembly	39161240	na
SUPER_14	assembled-molecule	14	Chromosome	CM113758.1	<>	na	Primary Assembly	38714119	na
SUPER_15	unplaced-scaffold	na	na	JBNCFJ010000015.1	<>	na	Primary Assembly	36796036	na
SUPER_16	unplaced-scaffold	na	na	JBNCFJ010000016.1	<>	na	Primary Assembly	32413555	na
SUPER_17	unplaced-scaffold	na	na	JBNCFJ010000017.1	<>	na	Primary Assembly	28322544	na
SUPER_18	unplaced-scaffold	na	na	JBNCFJ010000018.1	<>	na	Primary Assembly	26490949	na
SUPER_19	unplaced-scaffold	na	na	JBNCFJ010000019.1	<>	na	Primary Assembly	22937368	na
SUPER_20	unplaced-scaffold	na	na	JBNCFJ010000020.1	<>	na	Primary Assembly	21853369	na
SUPER_21	unplaced-scaffold	na	na	JBNCFJ010000021.1	<>	na	Primary Assembly	21519961	na
SUPER_22	unplaced-scaffold	na	na	JBNCFJ010000022.1	<>	na	Primary Assembly	19647601	na
SUPER_23	unplaced-scaffold	na	na	JBNCFJ010000023.1	<>	na	Primary Assembly	16412197	na
SUPER_24	unplaced-scaffold	na	na	JBNCFJ010000024.1	<>	na	Primary Assembly	15957747	na
SUPER_25	unplaced-scaffold	na	na	JBNCFJ010000025.1	<>	na	Primary Assembly	14153171	na
SUPER_26	unplaced-scaffold	na	na	JBNCFJ010000026.1	<>	na	Primary Assembly	13881925	na
SUPER_27	unplaced-scaffold	na	na	JBNCFJ010000027.1	<>	na	Primary Assembly	13550576	na
SUPER_28	unplaced-scaffold	na	na	JBNCFJ010000028.1	<>	na	Primary Assembly	12866920	na
SUPER_29	unplaced-scaffold	na	na	JBNCFJ010000029.1	<>	na	Primary Assembly	10993530	na
manual_scaffold_30	unplaced-scaffold	na	na	JBNCFJ010000030.1	<>	na	Primary Assembly	262744	na
manual_scaffold_31	unplaced-scaffold	na	na	JBNCFJ010000031.1	<>	na	Primary Assembly	134738	na
manual_scaffold_32	unplaced-scaffold	na	na	JBNCFJ010000032.1	<>	na	Primary Assembly	91194	na
manual_scaffold_33	unplaced-scaffold	na	na	JBNCFJ010000033.1	<>	na	Primary Assembly	68732	na
manual_scaffold_34	unplaced-scaffold	na	na	JBNCFJ010000034.1	<>	na	Primary Assembly	50186	na
manual_scaffold_35	unplaced-scaffold	na	na	JBNCFJ010000035.1	<>	na	Primary Assembly	50009	na
manual_scaffold_36	unplaced-scaffold	na	na	JBNCFJ010000036.1	<>	na	Primary Assembly	47682	na
manual_scaffold_37	unplaced-scaffold	na	na	JBNCFJ010000037.1	<>	na	Primary Assembly	46399	na
manual_scaffold_38	unplaced-scaffold	na	na	JBNCFJ010000038.1	<>	na	Primary Assembly	31843	na
manual_scaffold_39	unplaced-scaffold	na	na	JBNCFJ010000039.1	<>	na	Primary Assembly	11854	na