# Assembly name: fChaAug3.hap2 # Organism name: Chaetodon auriga (threadfin butterflyfish) # Isolate: fChaAug3 # Sex: male # Taxid: 39042 # BioSample: SAMN48779023 # BioProject: PRJNA1269100 # Submitter: Vertebrate Genomes Project # Date: 2025-06-26 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBONTO01 # Assembly method: Hifiasm + Hi-C phasing v. 0.20.0 + galaxy0; yahs v. 1.2a.2 + galaxy2 # Expected final version: no # Genome coverage: 99.2x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_051107495.1 # Linked assembly: GCA_051107435.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051107515.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM117796.1 <> na Primary Assembly 34542235 na SUPER_2 assembled-molecule 2 Chromosome CM117797.1 <> na Primary Assembly 31283253 na SUPER_3 assembled-molecule 3 Chromosome CM117798.1 <> na Primary Assembly 30599556 na SUPER_4 assembled-molecule 4 Chromosome CM117799.1 <> na Primary Assembly 30578279 na SUPER_5 assembled-molecule 5 Chromosome CM117800.1 <> na Primary Assembly 29915147 na SUPER_6 assembled-molecule 6 Chromosome CM117801.1 <> na Primary Assembly 29286162 na SUPER_7 assembled-molecule 7 Chromosome CM117802.1 <> na Primary Assembly 28599929 na SUPER_8 assembled-molecule 8 Chromosome CM117803.1 <> na Primary Assembly 29219898 na SUPER_9 assembled-molecule 9 Chromosome CM117804.1 <> na Primary Assembly 29279163 na SUPER_10 assembled-molecule 10 Chromosome CM117805.1 <> na Primary Assembly 28190230 na SUPER_11 assembled-molecule 11 Chromosome CM117806.1 <> na Primary Assembly 27314691 na SUPER_12 assembled-molecule 12 Chromosome CM117807.1 <> na Primary Assembly 26989190 na SUPER_13 assembled-molecule 13 Chromosome CM117808.1 <> na Primary Assembly 26785124 na SUPER_14 assembled-molecule 14 Chromosome CM117809.1 <> na Primary Assembly 26369482 na SUPER_15 assembled-molecule 15 Chromosome CM117810.1 <> na Primary Assembly 25325789 na SUPER_16 assembled-molecule 16 Chromosome CM117811.1 <> na Primary Assembly 24463642 na SUPER_17 assembled-molecule 17 Chromosome CM117812.1 <> na Primary Assembly 24569333 na SUPER_18 assembled-molecule 18 Chromosome CM117813.1 <> na Primary Assembly 24055579 na SUPER_19 assembled-molecule 19 Chromosome CM117814.1 <> na Primary Assembly 23764400 na SUPER_20 assembled-molecule 20 Chromosome CM117815.1 <> na Primary Assembly 23083763 na SUPER_21 assembled-molecule 21 Chromosome CM117816.1 <> na Primary Assembly 23029747 na SUPER_22 assembled-molecule 22 Chromosome CM117817.1 <> na Primary Assembly 20156102 na SUPER_23 assembled-molecule 23 Chromosome CM117818.1 <> na Primary Assembly 18981758 na SUPER_24 assembled-molecule 24 Chromosome CM117819.1 <> na Primary Assembly 18963983 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome JBONTO010000066.1 <> na Primary Assembly 65764 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JBONTO010000035.1 <> na Primary Assembly 278055 na Scaffold_216 unplaced-scaffold na na JBONTO010000025.1 <> na Primary Assembly 828987 na Scaffold_209 unplaced-scaffold na na JBONTO010000026.1 <> na Primary Assembly 464188 na Scaffold_226 unplaced-scaffold na na JBONTO010000027.1 <> na Primary Assembly 459124 na Scaffold_130 unplaced-scaffold na na JBONTO010000028.1 <> na Primary Assembly 404495 na Scaffold_143 unplaced-scaffold na na JBONTO010000029.1 <> na Primary Assembly 357769 na Scaffold_167 unplaced-scaffold na na JBONTO010000030.1 <> na Primary Assembly 352733 na Scaffold_169 unplaced-scaffold na na JBONTO010000031.1 <> na Primary Assembly 352173 na Scaffold_224 unplaced-scaffold na na JBONTO010000032.1 <> na Primary Assembly 317102 na Scaffold_206 unplaced-scaffold na na JBONTO010000033.1 <> na Primary Assembly 285654 na Scaffold_186 unplaced-scaffold na na JBONTO010000034.1 <> na Primary Assembly 285058 na Scaffold_144 unplaced-scaffold na na JBONTO010000036.1 <> na Primary Assembly 274911 na Scaffold_150 unplaced-scaffold na na JBONTO010000037.1 <> na Primary Assembly 267398 na Scaffold_137 unplaced-scaffold na na JBONTO010000038.1 <> na Primary Assembly 262260 na Scaffold_239 unplaced-scaffold na na JBONTO010000039.1 <> na Primary Assembly 259110 na Scaffold_149 unplaced-scaffold na na JBONTO010000040.1 <> na Primary Assembly 212463 na Scaffold_138 unplaced-scaffold na na JBONTO010000041.1 <> na Primary Assembly 209947 na Scaffold_146 unplaced-scaffold na na JBONTO010000042.1 <> na Primary Assembly 192979 na Scaffold_242 unplaced-scaffold na na JBONTO010000043.1 <> na Primary Assembly 189982 na Scaffold_147 unplaced-scaffold na na JBONTO010000044.1 <> na Primary Assembly 154613 na Scaffold_163 unplaced-scaffold na na JBONTO010000045.1 <> na Primary Assembly 149868 na Scaffold_151 unplaced-scaffold na na JBONTO010000046.1 <> na Primary Assembly 133609 na Scaffold_183 unplaced-scaffold na na JBONTO010000047.1 <> na Primary Assembly 124016 na Scaffold_247 unplaced-scaffold na na JBONTO010000048.1 <> na Primary Assembly 122874 na Scaffold_172 unplaced-scaffold na na JBONTO010000049.1 <> na Primary Assembly 115106 na Scaffold_140 unplaced-scaffold na na JBONTO010000050.1 <> na Primary Assembly 108574 na Scaffold_184 unplaced-scaffold na na JBONTO010000051.1 <> na Primary Assembly 105102 na Scaffold_173 unplaced-scaffold na na JBONTO010000052.1 <> na Primary Assembly 97018 na Scaffold_232 unplaced-scaffold na na JBONTO010000053.1 <> na Primary Assembly 96800 na Scaffold_123 unplaced-scaffold na na JBONTO010000054.1 <> na Primary Assembly 96755 na Scaffold_237 unplaced-scaffold na na JBONTO010000055.1 <> na Primary Assembly 92685 na Scaffold_157 unplaced-scaffold na na JBONTO010000056.1 <> na Primary Assembly 91926 na Scaffold_159 unplaced-scaffold na na JBONTO010000057.1 <> na Primary Assembly 80465 na Scaffold_180 unplaced-scaffold na na JBONTO010000058.1 <> na Primary Assembly 80459 na Scaffold_170 unplaced-scaffold na na JBONTO010000059.1 <> na Primary Assembly 77536 na Scaffold_231 unplaced-scaffold na na JBONTO010000060.1 <> na Primary Assembly 75633 na Scaffold_230 unplaced-scaffold na na JBONTO010000061.1 <> na Primary Assembly 74398 na Scaffold_246 unplaced-scaffold na na JBONTO010000062.1 <> na Primary Assembly 73641 na Scaffold_129 unplaced-scaffold na na JBONTO010000063.1 <> na Primary Assembly 71928 na Scaffold_160 unplaced-scaffold na na JBONTO010000064.1 <> na Primary Assembly 68135 na Scaffold_177 unplaced-scaffold na na JBONTO010000065.1 <> na Primary Assembly 67911 na Scaffold_128 unplaced-scaffold na na JBONTO010000067.1 <> na Primary Assembly 61364 na Scaffold_127 unplaced-scaffold na na JBONTO010000068.1 <> na Primary Assembly 56196 na Scaffold_126 unplaced-scaffold na na JBONTO010000069.1 <> na Primary Assembly 52753 na Scaffold_125 unplaced-scaffold na na JBONTO010000070.1 <> na Primary Assembly 52208 na Scaffold_236 unplaced-scaffold na na JBONTO010000071.1 <> na Primary Assembly 51165 na Scaffold_113 unplaced-scaffold na na JBONTO010000072.1 <> na Primary Assembly 45313 na Scaffold_122 unplaced-scaffold na na JBONTO010000073.1 <> na Primary Assembly 42014 na Scaffold_121 unplaced-scaffold na na JBONTO010000074.1 <> na Primary Assembly 40604 na Scaffold_120 unplaced-scaffold na na JBONTO010000075.1 <> na Primary Assembly 40297 na Scaffold_119 unplaced-scaffold na na JBONTO010000076.1 <> na Primary Assembly 38813 na Scaffold_118 unplaced-scaffold na na JBONTO010000077.1 <> na Primary Assembly 36477 na Scaffold_117 unplaced-scaffold na na JBONTO010000078.1 <> na Primary Assembly 35674 na Scaffold_116 unplaced-scaffold na na JBONTO010000079.1 <> na Primary Assembly 33486 na Scaffold_115 unplaced-scaffold na na JBONTO010000080.1 <> na Primary Assembly 32444 na Scaffold_114 unplaced-scaffold na na JBONTO010000081.1 <> na Primary Assembly 19270 na