# Assembly name: Cochliomyia_hominivorax_M2_hap1_scaffolds # Organism name: Cochliomyia hominivorax (primary screw-worm) # Isolate: Jam-Pan-F1 # Sex: male # Taxid: 115425 # BioSample: SAMN48703011 # BioProject: PRJNA1237801 # Submitter: USDA-Agricultural Research Service, USA # Date: 2025-06-30 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBPFHT01 # Assembly method: HiFiASM v. 0.24.0-r702 # Expected final version: yes # Genome coverage: 121x # Sequencing technology: PacBio CCS # RefSeq category: Reference Genome # GenBank assembly accession: GCA_051144965.1 # Linked assembly: GCA_051144935.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051144985.1 Primary Assembly ## GCA_051144995.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Chromosome1 assembled-molecule 1 Chromosome CM118040.1 <> na Primary Assembly 109821322 na Chromosome2 assembled-molecule 2 Chromosome CM118041.1 <> na Primary Assembly 86714327 na Chromosome3 assembled-molecule 3 Chromosome CM118042.1 <> na Primary Assembly 85577150 na Chromosome4 assembled-molecule 4 Chromosome CM118043.1 <> na Primary Assembly 82113414 na Chromosome5 assembled-molecule 5 Chromosome CM118044.1 <> na Primary Assembly 78679067 na ChromosomeX assembled-molecule X Chromosome CM118045.1 <> na Primary Assembly 6963279 na ChromosomeY assembled-molecule Y Chromosome CM118046.1 <> na Primary Assembly 646995 na ctg00000063.1 unplaced-scaffold na na JBPFHT010000008.1 <> na Primary Assembly 351423 na ctg00000067.1 unplaced-scaffold na na JBPFHT010000009.1 <> na Primary Assembly 238535 na ctg00000071.1 unplaced-scaffold na na JBPFHT010000010.1 <> na Primary Assembly 204158 na ctg00000074.1 unplaced-scaffold na na JBPFHT010000011.1 <> na Primary Assembly 186725 na ctg00000075.1 unplaced-scaffold na na JBPFHT010000012.1 <> na Primary Assembly 173831 na ctg00000078.1 unplaced-scaffold na na JBPFHT010000013.1 <> na Primary Assembly 163518 na ctg00000080.1 unplaced-scaffold na na JBPFHT010000014.1 <> na Primary Assembly 156861 na ctg00000084.1 unplaced-scaffold na na JBPFHT010000015.1 <> na Primary Assembly 141923 na ctg00000085.1 unplaced-scaffold na na JBPFHT010000016.1 <> na Primary Assembly 122471 na ctg00000086.1 unplaced-scaffold na na JBPFHT010000017.1 <> na Primary Assembly 109201 na ctg00000089.1 unplaced-scaffold na na JBPFHT010000018.1 <> na Primary Assembly 98989 na ctg00000092.1 unplaced-scaffold na na JBPFHT010000019.1 <> na Primary Assembly 88718 na ctg00000093.1 unplaced-scaffold na na JBPFHT010000020.1 <> na Primary Assembly 85798 na ctg00000094.1 unplaced-scaffold na na JBPFHT010000021.1 <> na Primary Assembly 78059 na ctg00000096.1 unplaced-scaffold na na JBPFHT010000022.1 <> na Primary Assembly 74716 na ctg00000099.1 unplaced-scaffold na na JBPFHT010000023.1 <> na Primary Assembly 71345 na ctg00000100.1 unplaced-scaffold na na JBPFHT010000024.1 <> na Primary Assembly 69732 na ctg00000101.1 unplaced-scaffold na na JBPFHT010000025.1 <> na Primary Assembly 68886 na ctg00000102.1 unplaced-scaffold na na JBPFHT010000026.1 <> na Primary Assembly 66666 na ctg00000103.1 unplaced-scaffold na na JBPFHT010000027.1 <> na Primary Assembly 66231 na ctg00000104.1 unplaced-scaffold na na JBPFHT010000028.1 <> na Primary Assembly 65540 na ctg00000105.1 unplaced-scaffold na na JBPFHT010000029.1 <> na Primary Assembly 63010 na ctg00000106.1 unplaced-scaffold na na JBPFHT010000030.1 <> na Primary Assembly 62433 na ctg00000107.1 unplaced-scaffold na na JBPFHT010000031.1 <> na Primary Assembly 62332 na ctg00000109.1 unplaced-scaffold na na JBPFHT010000032.1 <> na Primary Assembly 61815 na ctg00000111.1 unplaced-scaffold na na JBPFHT010000033.1 <> na Primary Assembly 60417 na ctg00000112.1 unplaced-scaffold na na JBPFHT010000034.1 <> na Primary Assembly 60092 na ctg00000113.1 unplaced-scaffold na na JBPFHT010000035.1 <> na Primary Assembly 60042 na ctg00000114.1 unplaced-scaffold na na JBPFHT010000036.1 <> na Primary Assembly 60024 na ctg00000115.1 unplaced-scaffold na na JBPFHT010000037.1 <> na Primary Assembly 59708 na ctg00000116.1 unplaced-scaffold na na JBPFHT010000038.1 <> na Primary Assembly 57371 na ctg00000117.1 unplaced-scaffold na na JBPFHT010000039.1 <> na Primary Assembly 57143 na ctg00000118.1 unplaced-scaffold na na JBPFHT010000040.1 <> na Primary Assembly 55249 na ctg00000119.1 unplaced-scaffold na na JBPFHT010000041.1 <> na Primary Assembly 54242 na ctg00000120.1 unplaced-scaffold na na JBPFHT010000042.1 <> na Primary Assembly 53571 na ctg00000124.1 unplaced-scaffold na na JBPFHT010000043.1 <> na Primary Assembly 49686 na ctg00000128.1 unplaced-scaffold na na JBPFHT010000044.1 <> na Primary Assembly 49058 na ctg00000129.1 unplaced-scaffold na na JBPFHT010000045.1 <> na Primary Assembly 48709 na ctg00000130.1 unplaced-scaffold na na JBPFHT010000046.1 <> na Primary Assembly 47984 na ctg00000131.1 unplaced-scaffold na na JBPFHT010000047.1 <> na Primary Assembly 47533 na ctg00000132.1 unplaced-scaffold na na JBPFHT010000048.1 <> na Primary Assembly 47401 na ctg00000133.1 unplaced-scaffold na na JBPFHT010000049.1 <> na Primary Assembly 47105 na ctg00000134.1 unplaced-scaffold na na JBPFHT010000050.1 <> na Primary Assembly 47028 na ctg00000135.1 unplaced-scaffold na na JBPFHT010000051.1 <> na Primary Assembly 46928 na ctg00000136.1 unplaced-scaffold na na JBPFHT010000052.1 <> na Primary Assembly 46727 na ctg00000137.1 unplaced-scaffold na na JBPFHT010000053.1 <> na Primary Assembly 46539 na ctg00000138.1 unplaced-scaffold na na JBPFHT010000054.1 <> na Primary Assembly 45785 na ctg00000139.1 unplaced-scaffold na na JBPFHT010000055.1 <> na Primary Assembly 45647 na ctg00000141.1 unplaced-scaffold na na JBPFHT010000056.1 <> na Primary Assembly 44936 na ctg00000143.1 unplaced-scaffold na na JBPFHT010000057.1 <> na Primary Assembly 43980 na ctg00000145.1 unplaced-scaffold na na JBPFHT010000058.1 <> na Primary Assembly 41886 na ctg00000146.1 unplaced-scaffold na na JBPFHT010000059.1 <> na Primary Assembly 41707 na ctg00000147.1 unplaced-scaffold na na JBPFHT010000060.1 <> na Primary Assembly 41163 na ctg00000148.1 unplaced-scaffold na na JBPFHT010000061.1 <> na Primary Assembly 40961 na ctg00000151.1 unplaced-scaffold na na JBPFHT010000062.1 <> na Primary Assembly 39212 na ctg00000153.1 unplaced-scaffold na na JBPFHT010000063.1 <> na Primary Assembly 35969 na ctg00000155.1 unplaced-scaffold na na JBPFHT010000064.1 <> na Primary Assembly 34944 na ctg00000156.1 unplaced-scaffold na na JBPFHT010000065.1 <> na Primary Assembly 33980 na ctg00000157.1 unplaced-scaffold na na JBPFHT010000066.1 <> na Primary Assembly 33855 na ctg00000158.1 unplaced-scaffold na na JBPFHT010000067.1 <> na Primary Assembly 33758 na ctg00000159.1 unplaced-scaffold na na JBPFHT010000068.1 <> na Primary Assembly 33722 na ctg00000160.1 unplaced-scaffold na na JBPFHT010000069.1 <> na Primary Assembly 33530 na ctg00000161.1 unplaced-scaffold na na JBPFHT010000070.1 <> na Primary Assembly 33138 na ctg00000162.1 unplaced-scaffold na na JBPFHT010000071.1 <> na Primary Assembly 33083 na ctg00000163.1 unplaced-scaffold na na JBPFHT010000072.1 <> na Primary Assembly 32017 na ctg00000164.1 unplaced-scaffold na na JBPFHT010000073.1 <> na Primary Assembly 31758 na ctg00000165.1 unplaced-scaffold na na JBPFHT010000074.1 <> na Primary Assembly 31630 na ctg00000166.1 unplaced-scaffold na na JBPFHT010000075.1 <> na Primary Assembly 31615 na ctg00000168.1 unplaced-scaffold na na JBPFHT010000076.1 <> na Primary Assembly 29125 na ctg00000169.1 unplaced-scaffold na na JBPFHT010000077.1 <> na Primary Assembly 29089 na ctg00000170.1 unplaced-scaffold na na JBPFHT010000078.1 <> na Primary Assembly 25924 na ctg00000173.1 unplaced-scaffold na na JBPFHT010000079.1 <> na Primary Assembly 23512 na ctg00000174.1 unplaced-scaffold na na JBPFHT010000080.1 <> na Primary Assembly 23089 na ctg00000175.1 unplaced-scaffold na na JBPFHT010000081.1 <> na Primary Assembly 22224 na ctg00000176.1 unplaced-scaffold na na JBPFHT010000082.1 <> na Primary Assembly 19815 na Mitogenome assembled-molecule MT Mitochondrion CM118047.1 <> na non-nuclear 16023 na