# Assembly name: rPelSom1.pri # Organism name: Pelomedusa somalica (turtles) # Isolate: rPelSom1 # Sex: male # Taxid: 1488670 # BioSample: SAMN49883935 # BioProject: PRJNA1289187 # Submitter: Vertebrate Genomes Project # Date: 2025-07-14 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBPQGS01 # Assembly method: FALCON v. 1.8.1; FALCON-Unzip v. 1.3.7; purge_dups v. 1.2.3; Scaff10x v. 4.2; Bionano Solve v. 1.6.1; Salsa2 v. 2.3; Gap closing with gcpp v. 2.0.2; Polishing with 10x reads and freebayes v. 1.3.2; Hapcut2 v. git commit 1ee1d58; whatshap v. 1.6; freebayes v. 1.3.2 # Expected final version: no # Genome coverage: 84.0x # Sequencing technology: Pacbio CLR; Arima Hi-C; 10X-linked reads; Bionano optical mapping (Saphyr) # RefSeq category: Reference Genome # GenBank assembly accession: GCA_051311615.1 # Linked assembly: GCA_051311595.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051311705.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM119678.1 <> na Primary Assembly 333594792 na SUPER_2 assembled-molecule 2 Chromosome CM119679.1 <> na Primary Assembly 327048571 na SUPER_3 assembled-molecule 3 Chromosome CM119680.1 <> na Primary Assembly 245697084 na SUPER_4 assembled-molecule 4 Chromosome CM119681.1 <> na Primary Assembly 217994614 na SUPER_5 assembled-molecule 5 Chromosome CM119682.1 <> na Primary Assembly 179778511 na SUPER_6 assembled-molecule 6 Chromosome CM119683.1 <> na Primary Assembly 108305946 na SUPER_7 assembled-molecule 7 Chromosome CM119684.1 <> na Primary Assembly 73566112 na SUPER_8 assembled-molecule 8 Chromosome CM119685.1 <> na Primary Assembly 71921577 na SUPER_9 assembled-molecule 9 Chromosome CM119686.1 <> na Primary Assembly 68776599 na SUPER_10 assembled-molecule 10 Chromosome CM119687.1 <> na Primary Assembly 62611004 na SUPER_11 assembled-molecule 11 Chromosome CM119688.1 <> na Primary Assembly 62610824 na SUPER_12 assembled-molecule 12 Chromosome CM119689.1 <> na Primary Assembly 57652805 na SUPER_13 assembled-molecule 13 Chromosome CM119690.1 <> na Primary Assembly 28365965 na SUPER_14 assembled-molecule 14 Chromosome CM119691.1 <> na Primary Assembly 27409850 na SUPER_15 assembled-molecule 15 Chromosome CM119692.1 <> na Primary Assembly 27100424 na SUPER_16 assembled-molecule 16 Chromosome CM119693.1 <> na Primary Assembly 21220993 na SUPER_17 assembled-molecule 17 Chromosome CM119694.1 <> na Primary Assembly 18302327 na SUPER_18 assembled-molecule 18 Chromosome CM119695.1 <> na Primary Assembly 13143600 na manual_scaffold_19 unplaced-scaffold na na JBPQGS010000019.1 <> na Primary Assembly 288357 na manual_scaffold_20 unplaced-scaffold na na JBPQGS010000020.1 <> na Primary Assembly 282593 na manual_scaffold_21 unplaced-scaffold na na JBPQGS010000021.1 <> na Primary Assembly 264911 na manual_scaffold_22 unplaced-scaffold na na JBPQGS010000022.1 <> na Primary Assembly 195250 na manual_scaffold_23 unplaced-scaffold na na JBPQGS010000023.1 <> na Primary Assembly 143372 na manual_scaffold_24 unplaced-scaffold na na JBPQGS010000024.1 <> na Primary Assembly 137904 na manual_scaffold_25 unplaced-scaffold na na JBPQGS010000025.1 <> na Primary Assembly 131630 na manual_scaffold_26 unplaced-scaffold na na JBPQGS010000026.1 <> na Primary Assembly 128680 na manual_scaffold_27 unplaced-scaffold na na JBPQGS010000027.1 <> na Primary Assembly 106205 na manual_scaffold_28 unplaced-scaffold na na JBPQGS010000028.1 <> na Primary Assembly 105288 na manual_scaffold_29 unplaced-scaffold na na JBPQGS010000029.1 <> na Primary Assembly 104135 na manual_scaffold_30 unplaced-scaffold na na JBPQGS010000030.1 <> na Primary Assembly 94066 na manual_scaffold_31 unplaced-scaffold na na JBPQGS010000031.1 <> na Primary Assembly 89079 na manual_scaffold_32 unplaced-scaffold na na JBPQGS010000032.1 <> na Primary Assembly 86337 na manual_scaffold_33 unplaced-scaffold na na JBPQGS010000033.1 <> na Primary Assembly 83426 na manual_scaffold_35 unplaced-scaffold na na JBPQGS010000034.1 <> na Primary Assembly 82502 na manual_scaffold_34 unplaced-scaffold na na JBPQGS010000035.1 <> na Primary Assembly 82356 na manual_scaffold_36 unplaced-scaffold na na JBPQGS010000036.1 <> na Primary Assembly 77131 na manual_scaffold_37 unplaced-scaffold na na JBPQGS010000037.1 <> na Primary Assembly 65301 na manual_scaffold_38 unplaced-scaffold na na JBPQGS010000038.1 <> na Primary Assembly 60931 na manual_scaffold_39 unplaced-scaffold na na JBPQGS010000039.1 <> na Primary Assembly 60511 na manual_scaffold_40 unplaced-scaffold na na JBPQGS010000040.1 <> na Primary Assembly 59161 na manual_scaffold_41 unplaced-scaffold na na JBPQGS010000041.1 <> na Primary Assembly 58874 na manual_scaffold_42 unplaced-scaffold na na JBPQGS010000042.1 <> na Primary Assembly 58099 na manual_scaffold_43 unplaced-scaffold na na JBPQGS010000043.1 <> na Primary Assembly 55994 na manual_scaffold_44 unplaced-scaffold na na JBPQGS010000044.1 <> na Primary Assembly 55324 na manual_scaffold_45 unplaced-scaffold na na JBPQGS010000045.1 <> na Primary Assembly 53022 na manual_scaffold_46 unplaced-scaffold na na JBPQGS010000046.1 <> na Primary Assembly 51319 na manual_scaffold_47 unplaced-scaffold na na JBPQGS010000047.1 <> na Primary Assembly 50339 na manual_scaffold_51 unplaced-scaffold na na JBPQGS010000048.1 <> na Primary Assembly 50026 na manual_scaffold_49 unplaced-scaffold na na JBPQGS010000049.1 <> na Primary Assembly 50010 na manual_scaffold_50 unplaced-scaffold na na JBPQGS010000050.1 <> na Primary Assembly 50003 na manual_scaffold_48 unplaced-scaffold na na JBPQGS010000051.1 <> na Primary Assembly 49998 na manual_scaffold_52 unplaced-scaffold na na JBPQGS010000052.1 <> na Primary Assembly 48784 na manual_scaffold_53 unplaced-scaffold na na JBPQGS010000053.1 <> na Primary Assembly 47745 na manual_scaffold_54 unplaced-scaffold na na JBPQGS010000054.1 <> na Primary Assembly 45402 na manual_scaffold_55 unplaced-scaffold na na JBPQGS010000055.1 <> na Primary Assembly 44684 na manual_scaffold_56 unplaced-scaffold na na JBPQGS010000056.1 <> na Primary Assembly 40034 na manual_scaffold_57 unplaced-scaffold na na JBPQGS010000057.1 <> na Primary Assembly 29210 na manual_scaffold_58 unplaced-scaffold na na JBPQGS010000058.1 <> na Primary Assembly 27776 na manual_scaffold_59 unplaced-scaffold na na JBPQGS010000059.1 <> na Primary Assembly 26503 na manual_scaffold_60 unplaced-scaffold na na JBPQGS010000060.1 <> na Primary Assembly 25183 na manual_scaffold_61 unplaced-scaffold na na JBPQGS010000061.1 <> na Primary Assembly 24075 na manual_scaffold_62 unplaced-scaffold na na JBPQGS010000062.1 <> na Primary Assembly 22580 na manual_scaffold_63 unplaced-scaffold na na JBPQGS010000063.1 <> na Primary Assembly 22298 na manual_scaffold_64 unplaced-scaffold na na JBPQGS010000064.1 <> na Primary Assembly 18220 na manual_scaffold_65 unplaced-scaffold na na JBPQGS010000065.1 <> na Primary Assembly 17320 na manual_scaffold_66 unplaced-scaffold na na JBPQGS010000066.1 <> na Primary Assembly 1910 na manual_scaffold_67 unplaced-scaffold na na JBPQGS010000067.1 <> na Primary Assembly 840 na