# Assembly name: mEleMax1.hap2 # Organism name: Elephas maximus indicus (Asiatic elephant) # Isolate: mEleMax1 # Sex: male # Taxid: 99487 # BioSample: SAMN29174328 # BioProject: PRJNA1247389 # Submitter: Leibniz Institute for Zoo and Wildlife Research # Date: 2025-08-11 # Assembly type: haploid (haplotype 2) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBNQWV01 # Assembly method: Hifiasm + Hi-C phasing v. 0.19.5; purge_dups v. 1.2.6; Bionano solve v. 3.3; yahs v. 1.2a.1 # Expected final version: yes # Genome coverage: 51x # Sequencing technology: PacBio Sequel II HiFi; Bionano optical mapping; Arima HiC # GenBank assembly accession: GCA_051911805.1 # Linked assembly: GCA_051911825.1 (haplotype 1) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_051911815.1 Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name hap2_chr_1 assembled-molecule 1 Chromosome CM123077.1 <> na Primary Assembly 242540316 na hap2_chr_2 assembled-molecule 2 Chromosome CM123078.1 <> na Primary Assembly 234471621 na hap2_chr_3 assembled-molecule 3 Chromosome CM123079.1 <> na Primary Assembly 209675643 na hap2_chr_4 assembled-molecule 4 Chromosome CM123080.1 <> na Primary Assembly 192570084 na hap2_chr_5 assembled-molecule 5 Chromosome CM123081.1 <> na Primary Assembly 168942159 na hap2_chr_6 assembled-molecule 6 Chromosome CM123082.1 <> na Primary Assembly 142860676 na hap2_chr_7 assembled-molecule 7 Chromosome CM123083.1 <> na Primary Assembly 131193967 na hap2_chr_8 assembled-molecule 8 Chromosome CM123084.1 <> na Primary Assembly 134135692 na hap2_chr_9 assembled-molecule 9 Chromosome CM123085.1 <> na Primary Assembly 125802197 na hap2_chr_10 assembled-molecule 10 Chromosome CM123086.1 <> na Primary Assembly 116290662 na hap2_chr_11 assembled-molecule 11 Chromosome CM123087.1 <> na Primary Assembly 110010710 na hap2_chr_12 assembled-molecule 12 Chromosome CM123088.1 <> na Primary Assembly 104898581 na hap2_chr_13 assembled-molecule 13 Chromosome CM123089.1 <> na Primary Assembly 96796778 na hap2_chr_14 assembled-molecule 14 Chromosome CM123090.1 <> na Primary Assembly 84883371 na hap2_chr_15 assembled-molecule 15 Chromosome CM123091.1 <> na Primary Assembly 92948618 na hap2_chr_16 assembled-molecule 16 Chromosome CM123092.1 <> na Primary Assembly 85267550 na hap2_chr_17 assembled-molecule 17 Chromosome CM123093.1 <> na Primary Assembly 88213608 na hap2_chr_18 assembled-molecule 18 Chromosome CM123094.1 <> na Primary Assembly 80300231 na hap2_chr_19 assembled-molecule 19 Chromosome CM123095.1 <> na Primary Assembly 82719204 na hap2_chr_20 assembled-molecule 20 Chromosome CM123096.1 <> na Primary Assembly 82835581 na hap2_chr_21 assembled-molecule 21 Chromosome CM123097.1 <> na Primary Assembly 81086902 na hap2_chr_22 assembled-molecule 22 Chromosome CM123098.1 <> na Primary Assembly 80740571 na hap2_chr_23 assembled-molecule 23 Chromosome CM123099.1 <> na Primary Assembly 78370265 na hap2_chr_24 assembled-molecule 24 Chromosome CM123100.1 <> na Primary Assembly 65267526 na hap2_chr_25 assembled-molecule 25 Chromosome CM123101.1 <> na Primary Assembly 66579184 na hap2_chr_26 assembled-molecule 26 Chromosome CM123102.1 <> na Primary Assembly 49409000 na hap2_chr_27 assembled-molecule 27 Chromosome CM123103.1 <> na Primary Assembly 40266998 na hap2_scaffold_100 unplaced-scaffold na na JBNQWV010000028.1 <> na Primary Assembly 551000 na hap2_scaffold_102 unplaced-scaffold na na JBNQWV010000029.1 <> na Primary Assembly 539446 na hap2_scaffold_104 unplaced-scaffold na na JBNQWV010000030.1 <> na Primary Assembly 538000 na hap2_scaffold_113 unplaced-scaffold na na JBNQWV010000031.1 <> na Primary Assembly 515167 na hap2_scaffold_122 unplaced-scaffold na na JBNQWV010000032.1 <> na Primary Assembly 62387 na hap2_scaffold_132 unplaced-scaffold na na JBNQWV010000033.1 <> na Primary Assembly 418000 na hap2_scaffold_138 unplaced-scaffold na na JBNQWV010000034.1 <> na Primary Assembly 392814 na hap2_scaffold_158 unplaced-scaffold na na JBNQWV010000035.1 <> na Primary Assembly 327000 na hap2_scaffold_161 unplaced-scaffold na na JBNQWV010000036.1 <> na Primary Assembly 305649 na hap2_scaffold_179 unplaced-scaffold na na JBNQWV010000037.1 <> na Primary Assembly 264102 na hap2_scaffold_191 unplaced-scaffold na na JBNQWV010000038.1 <> na Primary Assembly 248000 na hap2_scaffold_201 unplaced-scaffold na na JBNQWV010000039.1 <> na Primary Assembly 227832 na hap2_scaffold_204 unplaced-scaffold na na JBNQWV010000040.1 <> na Primary Assembly 221389 na hap2_scaffold_205 unplaced-scaffold na na JBNQWV010000041.1 <> na Primary Assembly 221000 na hap2_scaffold_221 unplaced-scaffold na na JBNQWV010000042.1 <> na Primary Assembly 187715 na hap2_scaffold_264 unplaced-scaffold na na JBNQWV010000043.1 <> na Primary Assembly 141651 na hap2_scaffold_265 unplaced-scaffold na na JBNQWV010000044.1 <> na Primary Assembly 141276 na hap2_scaffold_271 unplaced-scaffold na na JBNQWV010000045.1 <> na Primary Assembly 139000 na hap2_scaffold_280 unplaced-scaffold na na JBNQWV010000046.1 <> na Primary Assembly 135352 na hap2_scaffold_288 unplaced-scaffold na na JBNQWV010000047.1 <> na Primary Assembly 128329 na hap2_scaffold_32 unplaced-scaffold na na JBNQWV010000048.1 <> na Primary Assembly 2610227 na hap2_scaffold_33 unplaced-scaffold na na JBNQWV010000049.1 <> na Primary Assembly 1509037 na hap2_scaffold_364 unplaced-scaffold na na JBNQWV010000050.1 <> na Primary Assembly 87292 na hap2_scaffold_405 unplaced-scaffold na na JBNQWV010000051.1 <> na Primary Assembly 72300 na hap2_scaffold_41 unplaced-scaffold na na JBNQWV010000052.1 <> na Primary Assembly 2046207 na hap2_scaffold_412 unplaced-scaffold na na JBNQWV010000053.1 <> na Primary Assembly 71000 na hap2_scaffold_420 unplaced-scaffold na na JBNQWV010000054.1 <> na Primary Assembly 69000 na hap2_scaffold_421 unplaced-scaffold na na JBNQWV010000055.1 <> na Primary Assembly 16254 na hap2_scaffold_42 unplaced-scaffold na na JBNQWV010000056.1 <> na Primary Assembly 1771803 na hap2_scaffold_423 unplaced-scaffold na na JBNQWV010000057.1 <> na Primary Assembly 68828 na hap2_scaffold_43 unplaced-scaffold na na JBNQWV010000058.1 <> na Primary Assembly 2072922 na hap2_scaffold_443 unplaced-scaffold na na JBNQWV010000059.1 <> na Primary Assembly 60495 na hap2_scaffold_45 unplaced-scaffold na na JBNQWV010000060.1 <> na Primary Assembly 1819144 na hap2_scaffold_460 unplaced-scaffold na na JBNQWV010000061.1 <> na Primary Assembly 55458 na hap2_scaffold_46 unplaced-scaffold na na JBNQWV010000062.1 <> na Primary Assembly 1808166 na hap2_scaffold_469 unplaced-scaffold na na JBNQWV010000063.1 <> na Primary Assembly 51000 na hap2_scaffold_48 unplaced-scaffold na na JBNQWV010000064.1 <> na Primary Assembly 1724529 na hap2_scaffold_488 unplaced-scaffold na na JBNQWV010000065.1 <> na Primary Assembly 41194 na hap2_scaffold_490 unplaced-scaffold na na JBNQWV010000066.1 <> na Primary Assembly 39007 na hap2_scaffold_500 unplaced-scaffold na na JBNQWV010000067.1 <> na Primary Assembly 35176 na hap2_scaffold_517 unplaced-scaffold na na JBNQWV010000068.1 <> na Primary Assembly 27575 na hap2_scaffold_529 unplaced-scaffold na na JBNQWV010000069.1 <> na Primary Assembly 22953 na hap2_scaffold_53 unplaced-scaffold na na JBNQWV010000070.1 <> na Primary Assembly 1382569 na hap2_scaffold_550 unplaced-scaffold na na JBNQWV010000071.1 <> na Primary Assembly 15448 na hap2_scaffold_551 unplaced-scaffold na na JBNQWV010000072.1 <> na Primary Assembly 15075 na hap2_scaffold_56 unplaced-scaffold na na JBNQWV010000073.1 <> na Primary Assembly 1054457 na hap2_scaffold_57a unplaced-scaffold na na JBNQWV010000074.1 <> na Primary Assembly 541779 na hap2_scaffold_61 unplaced-scaffold na na JBNQWV010000075.1 <> na Primary Assembly 1136228 na hap2_scaffold_63 unplaced-scaffold na na JBNQWV010000076.1 <> na Primary Assembly 1079662 na hap2_scaffold_64 unplaced-scaffold na na JBNQWV010000077.1 <> na Primary Assembly 1067775 na hap2_scaffold_65 unplaced-scaffold na na JBNQWV010000078.1 <> na Primary Assembly 411032 na hap2_scaffold_67 unplaced-scaffold na na JBNQWV010000079.1 <> na Primary Assembly 978120 na hap2_scaffold_70 unplaced-scaffold na na JBNQWV010000080.1 <> na Primary Assembly 876338 na hap2_scaffold_71 unplaced-scaffold na na JBNQWV010000081.1 <> na Primary Assembly 873628 na hap2_scaffold_75 unplaced-scaffold na na JBNQWV010000082.1 <> na Primary Assembly 754000 na hap2_scaffold_78 unplaced-scaffold na na JBNQWV010000083.1 <> na Primary Assembly 709709 na hap2_scaffold_79 unplaced-scaffold na na JBNQWV010000084.1 <> na Primary Assembly 707453 na hap2_scaffold_81 unplaced-scaffold na na JBNQWV010000085.1 <> na Primary Assembly 675091 na hap2_scaffold_88 unplaced-scaffold na na JBNQWV010000086.1 <> na Primary Assembly 634374 na hap2_scaffold_8a unplaced-scaffold na na JBNQWV010000087.1 <> na Primary Assembly 1847031 na hap2_scaffold_95 unplaced-scaffold na na JBNQWV010000088.1 <> na Primary Assembly 572660 na