# Assembly name: mPteRuf1.hap1 # Organism name: Pteropus rufus (Malagasy flying fox) # Isolate: mPteRuf1 # Sex: female # Taxid: 196297 # BioSample: SAMN56339004 # BioProject: PRJNA1432113 # Submitter: Vertebrate Genomes Project # Date: 2026-03-27 # Assembly type: haploid (haplotype 1) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBWDIQ01 # Assembly method: Hifiasm + Hi-C phasing v. 0.25.0 + galaxy0; yahs v. 1.2a.2 + galaxy2 # Expected final version: No # Genome coverage: 78.7x # Sequencing technology: PacBio Revio HiFi; Arima Hi-C v2 # GenBank assembly accession: GCA_056363885.1 # Linked assembly: GCA_056363655.1 (haplotype 2) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_056364025.1 Primary Assembly ## GCA_056364035.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome CM150661.1 <> na Primary Assembly 189797532 na SUPER_2 assembled-molecule 2 Chromosome CM150662.1 <> na Primary Assembly 184111427 na SUPER_3 assembled-molecule 3 Chromosome CM150663.1 <> na Primary Assembly 182901848 na SUPER_4 assembled-molecule 4 Chromosome CM150664.1 <> na Primary Assembly 170474009 na SUPER_5 assembled-molecule 5 Chromosome CM150665.1 <> na Primary Assembly 131388757 na SUPER_6 assembled-molecule 6 Chromosome CM150666.1 <> na Primary Assembly 120032851 na SUPER_7 assembled-molecule 7 Chromosome CM150667.1 <> na Primary Assembly 119309519 na SUPER_8 assembled-molecule 8 Chromosome CM150668.1 <> na Primary Assembly 118754336 na SUPER_9 assembled-molecule 9 Chromosome CM150669.1 <> na Primary Assembly 112678363 na SUPER_10 assembled-molecule 10 Chromosome CM150670.1 <> na Primary Assembly 104674865 na SUPER_11 assembled-molecule 11 Chromosome CM150671.1 <> na Primary Assembly 99718655 na SUPER_12 assembled-molecule 12 Chromosome CM150672.1 <> na Primary Assembly 87736634 na SUPER_13 assembled-molecule 13 Chromosome CM150673.1 <> na Primary Assembly 71820585 na SUPER_14 assembled-molecule 14 Chromosome CM150674.1 <> na Primary Assembly 65811991 na SUPER_15 assembled-molecule 15 Chromosome CM150675.1 <> na Primary Assembly 50994562 na SUPER_16 assembled-molecule 16 Chromosome CM150676.1 <> na Primary Assembly 50435927 na SUPER_17 assembled-molecule 17 Chromosome CM150677.1 <> na Primary Assembly 29771855 na SUPER_18 assembled-molecule 18 Chromosome CM150678.1 <> na Primary Assembly 27211235 na SUPER_X assembled-molecule X Chromosome CM150679.1 <> na Primary Assembly 131355388 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome JBWDIQ010000080.1 <> na Primary Assembly 153357 na SUPER_5_unloc_1 unlocalized-scaffold 5 Chromosome JBWDIQ010000030.1 <> na Primary Assembly 650602 na SUPER_18_unloc_5 unlocalized-scaffold 18 Chromosome JBWDIQ010000028.1 <> na Primary Assembly 799750 na SUPER_18_unloc_4 unlocalized-scaffold 18 Chromosome JBWDIQ010000034.1 <> na Primary Assembly 598908 na SUPER_18_unloc_2 unlocalized-scaffold 18 Chromosome JBWDIQ010000036.1 <> na Primary Assembly 545910 na SUPER_18_unloc_3 unlocalized-scaffold 18 Chromosome JBWDIQ010000044.1 <> na Primary Assembly 360454 na SUPER_18_unloc_1 unlocalized-scaffold 18 Chromosome JBWDIQ010000054.1 <> na Primary Assembly 280140 na SUPER_18_unloc_6 unlocalized-scaffold 18 Chromosome JBWDIQ010000057.1 <> na Primary Assembly 274501 na SUPER_18_unloc_9 unlocalized-scaffold 18 Chromosome JBWDIQ010000063.1 <> na Primary Assembly 237534 na SUPER_18_unloc_8 unlocalized-scaffold 18 Chromosome JBWDIQ010000069.1 <> na Primary Assembly 202388 na SUPER_18_unloc_7 unlocalized-scaffold 18 Chromosome JBWDIQ010000073.1 <> na Primary Assembly 171915 na SUPER_X_unloc_1 unlocalized-scaffold X Chromosome JBWDIQ010000055.1 <> na Primary Assembly 277832 na Scaffold_44 unplaced-scaffold na na JBWDIQ010000021.1 <> na Primary Assembly 5298815 na Scaffold_46 unplaced-scaffold na na JBWDIQ010000022.1 <> na Primary Assembly 1830983 na Scaffold_48 unplaced-scaffold na na JBWDIQ010000023.1 <> na Primary Assembly 1817308 na Scaffold_43 unplaced-scaffold na na JBWDIQ010000024.1 <> na Primary Assembly 1286827 na Scaffold_68 unplaced-scaffold na na JBWDIQ010000025.1 <> na Primary Assembly 1263414 na Scaffold_69 unplaced-scaffold na na JBWDIQ010000026.1 <> na Primary Assembly 1203927 na Scaffold_70 unplaced-scaffold na na JBWDIQ010000027.1 <> na Primary Assembly 816005 na Scaffold_83 unplaced-scaffold na na JBWDIQ010000029.1 <> na Primary Assembly 650791 na Scaffold_84 unplaced-scaffold na na JBWDIQ010000031.1 <> na Primary Assembly 635483 na Scaffold_61 unplaced-scaffold na na JBWDIQ010000032.1 <> na Primary Assembly 633210 na Scaffold_85 unplaced-scaffold na na JBWDIQ010000033.1 <> na Primary Assembly 628894 na Scaffold_63 unplaced-scaffold na na JBWDIQ010000035.1 <> na Primary Assembly 576388 na Scaffold_86 unplaced-scaffold na na JBWDIQ010000037.1 <> na Primary Assembly 525506 na Scaffold_101 unplaced-scaffold na na JBWDIQ010000038.1 <> na Primary Assembly 490565 na Scaffold_102 unplaced-scaffold na na JBWDIQ010000039.1 <> na Primary Assembly 486531 na Scaffold_62 unplaced-scaffold na na JBWDIQ010000040.1 <> na Primary Assembly 485990 na Scaffold_73 unplaced-scaffold na na JBWDIQ010000041.1 <> na Primary Assembly 467870 na Scaffold_60 unplaced-scaffold na na JBWDIQ010000042.1 <> na Primary Assembly 452615 na Scaffold_42 unplaced-scaffold na na JBWDIQ010000043.1 <> na Primary Assembly 394653 na Scaffold_76 unplaced-scaffold na na JBWDIQ010000045.1 <> na Primary Assembly 345959 na Scaffold_94 unplaced-scaffold na na JBWDIQ010000046.1 <> na Primary Assembly 338634 na Scaffold_103 unplaced-scaffold na na JBWDIQ010000047.1 <> na Primary Assembly 334005 na Scaffold_105 unplaced-scaffold na na JBWDIQ010000048.1 <> na Primary Assembly 322811 na Scaffold_106 unplaced-scaffold na na JBWDIQ010000049.1 <> na Primary Assembly 321054 na Scaffold_64 unplaced-scaffold na na JBWDIQ010000050.1 <> na Primary Assembly 316501 na Scaffold_87 unplaced-scaffold na na JBWDIQ010000051.1 <> na Primary Assembly 294241 na Scaffold_89 unplaced-scaffold na na JBWDIQ010000052.1 <> na Primary Assembly 293177 na Scaffold_113 unplaced-scaffold na na JBWDIQ010000053.1 <> na Primary Assembly 282228 na Scaffold_107 unplaced-scaffold na na JBWDIQ010000056.1 <> na Primary Assembly 276158 na Scaffold_77 unplaced-scaffold na na JBWDIQ010000058.1 <> na Primary Assembly 260600 na Scaffold_78 unplaced-scaffold na na JBWDIQ010000059.1 <> na Primary Assembly 256699 na Scaffold_79 unplaced-scaffold na na JBWDIQ010000060.1 <> na Primary Assembly 253738 na Scaffold_100 unplaced-scaffold na na JBWDIQ010000061.1 <> na Primary Assembly 253069 na Scaffold_114 unplaced-scaffold na na JBWDIQ010000062.1 <> na Primary Assembly 239186 na Scaffold_65 unplaced-scaffold na na JBWDIQ010000064.1 <> na Primary Assembly 234063 na Scaffold_75 unplaced-scaffold na na JBWDIQ010000065.1 <> na Primary Assembly 227982 na Scaffold_116 unplaced-scaffold na na JBWDIQ010000066.1 <> na Primary Assembly 217962 na Scaffold_117 unplaced-scaffold na na JBWDIQ010000067.1 <> na Primary Assembly 208555 na Scaffold_81 unplaced-scaffold na na JBWDIQ010000068.1 <> na Primary Assembly 202934 na Scaffold_80 unplaced-scaffold na na JBWDIQ010000070.1 <> na Primary Assembly 188033 na Scaffold_52 unplaced-scaffold na na JBWDIQ010000071.1 <> na Primary Assembly 177472 na Scaffold_122 unplaced-scaffold na na JBWDIQ010000072.1 <> na Primary Assembly 175408 na Scaffold_96 unplaced-scaffold na na JBWDIQ010000074.1 <> na Primary Assembly 168513 na Scaffold_126 unplaced-scaffold na na JBWDIQ010000075.1 <> na Primary Assembly 164572 na Scaffold_128 unplaced-scaffold na na JBWDIQ010000076.1 <> na Primary Assembly 157203 na Scaffold_129 unplaced-scaffold na na JBWDIQ010000077.1 <> na Primary Assembly 155859 na Scaffold_49 unplaced-scaffold na na JBWDIQ010000078.1 <> na Primary Assembly 155667 na Scaffold_130 unplaced-scaffold na na JBWDIQ010000079.1 <> na Primary Assembly 155080 na Scaffold_131 unplaced-scaffold na na JBWDIQ010000081.1 <> na Primary Assembly 151601 na Scaffold_132 unplaced-scaffold na na JBWDIQ010000082.1 <> na Primary Assembly 148753 na Scaffold_51 unplaced-scaffold na na JBWDIQ010000083.1 <> na Primary Assembly 145447 na Scaffold_134 unplaced-scaffold na na JBWDIQ010000084.1 <> na Primary Assembly 143825 na Scaffold_99 unplaced-scaffold na na JBWDIQ010000085.1 <> na Primary Assembly 143637 na Scaffold_135 unplaced-scaffold na na JBWDIQ010000086.1 <> na Primary Assembly 140401 na Scaffold_53 unplaced-scaffold na na JBWDIQ010000087.1 <> na Primary Assembly 138331 na Scaffold_59 unplaced-scaffold na na JBWDIQ010000088.1 <> na Primary Assembly 138055 na Scaffold_136 unplaced-scaffold na na JBWDIQ010000089.1 <> na Primary Assembly 135723 na Scaffold_137 unplaced-scaffold na na JBWDIQ010000090.1 <> na Primary Assembly 131728 na Scaffold_138 unplaced-scaffold na na JBWDIQ010000091.1 <> na Primary Assembly 128456 na Scaffold_139 unplaced-scaffold na na JBWDIQ010000092.1 <> na Primary Assembly 127610 na Scaffold_58 unplaced-scaffold na na JBWDIQ010000093.1 <> na Primary Assembly 117520 na Scaffold_142 unplaced-scaffold na na JBWDIQ010000094.1 <> na Primary Assembly 113526 na Scaffold_143 unplaced-scaffold na na JBWDIQ010000095.1 <> na Primary Assembly 113123 na Scaffold_39 unplaced-scaffold na na JBWDIQ010000096.1 <> na Primary Assembly 111566 na Scaffold_50 unplaced-scaffold na na JBWDIQ010000097.1 <> na Primary Assembly 110859 na Scaffold_144 unplaced-scaffold na na JBWDIQ010000098.1 <> na Primary Assembly 107777 na Scaffold_40 unplaced-scaffold na na JBWDIQ010000099.1 <> na Primary Assembly 103914 na Scaffold_146 unplaced-scaffold na na JBWDIQ010000100.1 <> na Primary Assembly 103818 na Scaffold_147 unplaced-scaffold na na JBWDIQ010000101.1 <> na Primary Assembly 103804 na Scaffold_189 unplaced-scaffold na na JBWDIQ010000102.1 <> na Primary Assembly 103387 na Scaffold_149 unplaced-scaffold na na JBWDIQ010000103.1 <> na Primary Assembly 98846 na Scaffold_41 unplaced-scaffold na na JBWDIQ010000104.1 <> na Primary Assembly 97772 na Scaffold_150 unplaced-scaffold na na JBWDIQ010000105.1 <> na Primary Assembly 96308 na Scaffold_183 unplaced-scaffold na na JBWDIQ010000106.1 <> na Primary Assembly 95860 na Scaffold_56 unplaced-scaffold na na JBWDIQ010000107.1 <> na Primary Assembly 92685 na Scaffold_195 unplaced-scaffold na na JBWDIQ010000108.1 <> na Primary Assembly 92388 na Scaffold_196 unplaced-scaffold na na JBWDIQ010000109.1 <> na Primary Assembly 89808 na Scaffold_154 unplaced-scaffold na na JBWDIQ010000110.1 <> na Primary Assembly 89799 na Scaffold_155 unplaced-scaffold na na JBWDIQ010000111.1 <> na Primary Assembly 89770 na Scaffold_156 unplaced-scaffold na na JBWDIQ010000112.1 <> na Primary Assembly 89727 na Scaffold_200 unplaced-scaffold na na JBWDIQ010000113.1 <> na Primary Assembly 86969 na Scaffold_158 unplaced-scaffold na na JBWDIQ010000114.1 <> na Primary Assembly 82809 na Scaffold_159 unplaced-scaffold na na JBWDIQ010000115.1 <> na Primary Assembly 80860 na Scaffold_161 unplaced-scaffold na na JBWDIQ010000116.1 <> na Primary Assembly 77955 na Scaffold_215 unplaced-scaffold na na JBWDIQ010000117.1 <> na Primary Assembly 76947 na Scaffold_239 unplaced-scaffold na na JBWDIQ010000118.1 <> na Primary Assembly 74081 na Scaffold_163 unplaced-scaffold na na JBWDIQ010000119.1 <> na Primary Assembly 73828 na Scaffold_165 unplaced-scaffold na na JBWDIQ010000120.1 <> na Primary Assembly 69682 na Scaffold_242 unplaced-scaffold na na JBWDIQ010000121.1 <> na Primary Assembly 69428 na Scaffold_169 unplaced-scaffold na na JBWDIQ010000122.1 <> na Primary Assembly 63404 na Scaffold_244 unplaced-scaffold na na JBWDIQ010000123.1 <> na Primary Assembly 62996 na Scaffold_245 unplaced-scaffold na na JBWDIQ010000124.1 <> na Primary Assembly 58310 na Scaffold_172 unplaced-scaffold na na JBWDIQ010000125.1 <> na Primary Assembly 57533 na Scaffold_247 unplaced-scaffold na na JBWDIQ010000126.1 <> na Primary Assembly 57386 na Scaffold_248 unplaced-scaffold na na JBWDIQ010000127.1 <> na Primary Assembly 53398 na Scaffold_250 unplaced-scaffold na na JBWDIQ010000128.1 <> na Primary Assembly 51937 na Scaffold_251 unplaced-scaffold na na JBWDIQ010000129.1 <> na Primary Assembly 51858 na Scaffold_174 unplaced-scaffold na na JBWDIQ010000130.1 <> na Primary Assembly 51569 na Scaffold_253 unplaced-scaffold na na JBWDIQ010000131.1 <> na Primary Assembly 47906 na Scaffold_175 unplaced-scaffold na na JBWDIQ010000132.1 <> na Primary Assembly 47867 na Scaffold_255 unplaced-scaffold na na JBWDIQ010000133.1 <> na Primary Assembly 46715 na Scaffold_176 unplaced-scaffold na na JBWDIQ010000134.1 <> na Primary Assembly 45772 na Scaffold_177 unplaced-scaffold na na JBWDIQ010000135.1 <> na Primary Assembly 45021 na Scaffold_178 unplaced-scaffold na na JBWDIQ010000136.1 <> na Primary Assembly 43206 na Scaffold_233 unplaced-scaffold na na JBWDIQ010000137.1 <> na Primary Assembly 42200 na Scaffold_179 unplaced-scaffold na na JBWDIQ010000138.1 <> na Primary Assembly 41545 na Scaffold_228 unplaced-scaffold na na JBWDIQ010000139.1 <> na Primary Assembly 38048 na Scaffold_229 unplaced-scaffold na na JBWDIQ010000140.1 <> na Primary Assembly 35770 na Scaffold_230 unplaced-scaffold na na JBWDIQ010000141.1 <> na Primary Assembly 33385 na Scaffold_231 unplaced-scaffold na na JBWDIQ010000142.1 <> na Primary Assembly 30466 na Scaffold_232 unplaced-scaffold na na JBWDIQ010000143.1 <> na Primary Assembly 29479 na Scaffold_181 unplaced-scaffold na na JBWDIQ010000144.1 <> na Primary Assembly 25450 na Scaffold_234 unplaced-scaffold na na JBWDIQ010000145.1 <> na Primary Assembly 25345 na Scaffold_235 unplaced-scaffold na na JBWDIQ010000146.1 <> na Primary Assembly 25344 na Scaffold_236 unplaced-scaffold na na JBWDIQ010000147.1 <> na Primary Assembly 21199 na Scaffold_237 unplaced-scaffold na na JBWDIQ010000148.1 <> na Primary Assembly 20910 na Scaffold_182 unplaced-scaffold na na JBWDIQ010000149.1 <> na Primary Assembly 16845 na atg000029l_rotated assembled-molecule MT Mitochondrion CM150680.1 <> na non-nuclear 16765 na