# Assembly name: ASM6108353v1 # Organism name: Coturnix japonica (Japanese quail) # Isolate: JQ_muscle # Sex: female # Taxid: 93934 # BioSample: SAMN55867808 # BioProject: PRJNA1414791 # Submitter: Southwest University # Date: 2026-09-08 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: JBVQCR01 # Assembly method: hifiasm v. 19-JAN-2024; 3D DNA v. 19-JAN-2024 # Expected final version: Yes # Genome coverage: 291.0x # Sequencing technology: Illumina; Oxford Nanopore; PacBio Sequel # GenBank assembly accession: GCA_061083535.1 # ## Assembly-Unit names: ## Primary Assembly # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name chr1 assembled-molecule 1 Chromosome CM194566.1 <> na Primary Assembly 182557981 na chr2 assembled-molecule 2 Chromosome CM194567.1 <> na Primary Assembly 144030960 na chr3 assembled-molecule 3 Chromosome CM194568.1 <> na Primary Assembly 104270845 na chr4 assembled-molecule 4 Chromosome CM194569.1 <> na Primary Assembly 92296471 na chr5 assembled-molecule 5 Chromosome CM194570.1 <> na Primary Assembly 56775252 na chr6 assembled-molecule 6 Chromosome CM194571.1 <> na Primary Assembly 33203806 na chr7 assembled-molecule 7 Chromosome CM194572.1 <> na Primary Assembly 35324165 na chr8 assembled-molecule 8 Chromosome CM194573.1 <> na Primary Assembly 29005113 na chr9 assembled-molecule 9 Chromosome CM194574.1 <> na Primary Assembly 22808959 na chr10 assembled-molecule 10 Chromosome CM194575.1 <> na Primary Assembly 20782752 na chr11 assembled-molecule 11 Chromosome CM194576.1 <> na Primary Assembly 19078152 na chr12 assembled-molecule 12 Chromosome CM194577.1 <> na Primary Assembly 26127711 na chr13 assembled-molecule 13 Chromosome CM194578.1 <> na Primary Assembly 24313284 na chr14 assembled-molecule 14 Chromosome CM194579.1 <> na Primary Assembly 24771915 na chr15 assembled-molecule 15 Chromosome CM194580.1 <> na Primary Assembly 18853226 na chr16 assembled-molecule 16 Chromosome CM194581.1 <> na Primary Assembly 4041268 na chr17 assembled-molecule 17 Chromosome CM194582.1 <> na Primary Assembly 16922567 na chr18 assembled-molecule 18 Chromosome CM194583.1 <> na Primary Assembly 21827186 na chr19 assembled-molecule 19 Chromosome CM194584.1 <> na Primary Assembly 15995168 na chr20 assembled-molecule 20 Chromosome CM194585.1 <> na Primary Assembly 19907391 na chr21 assembled-molecule 21 Chromosome CM194586.1 <> na Primary Assembly 14053523 na chr22 assembled-molecule 22 Chromosome CM194587.1 <> na Primary Assembly 13690722 na chr23 assembled-molecule 23 Chromosome CM194588.1 <> na Primary Assembly 19243857 na chr24 assembled-molecule 24 Chromosome CM194589.1 <> na Primary Assembly 11392055 na chr25 assembled-molecule 25 Chromosome CM194590.1 <> na Primary Assembly 11312389 na chr26 assembled-molecule 26 Chromosome CM194591.1 <> na Primary Assembly 13586517 na chr27 assembled-molecule 27 Chromosome CM194592.1 <> na Primary Assembly 14969533 na chr28 assembled-molecule 28 Chromosome CM194593.1 <> na Primary Assembly 11817260 na chr29 assembled-molecule 29 Chromosome CM194594.1 <> na Primary Assembly 13436444 na chr30 assembled-molecule 30 Chromosome CM194595.1 <> na Primary Assembly 12736527 na chr31 assembled-molecule 31 Chromosome CM194596.1 <> na Primary Assembly 10318388 na chr32 assembled-molecule 32 Chromosome CM194597.1 <> na Primary Assembly 4413349 na chr33 assembled-molecule 33 Chromosome CM194598.1 <> na Primary Assembly 9680559 na chr34 assembled-molecule 34 Chromosome CM194599.1 <> na Primary Assembly 11763659 na chr35 assembled-molecule 35 Chromosome CM194600.1 <> na Primary Assembly 11806203 na chr36 assembled-molecule 36 Chromosome CM194601.1 <> na Primary Assembly 12821569 na chr37 assembled-molecule 37 Chromosome CM194602.1 <> na Primary Assembly 2464768 na chr38 assembled-molecule 38 Chromosome CM194603.1 <> na Primary Assembly 10781120 na chrW assembled-molecule W Chromosome CM194604.1 <> na Primary Assembly 29481818 na chrZ assembled-molecule Z Chromosome CM194605.1 <> na Primary Assembly 82921969 na HiC_scaffold_41 unplaced-scaffold na na JBVQCR010000041.1 <> na Primary Assembly 4628787 na HiC_scaffold_42 unplaced-scaffold na na JBVQCR010000042.1 <> na Primary Assembly 6606614 na HiC_scaffold_43 unplaced-scaffold na na JBVQCR010000043.1 <> na Primary Assembly 1480482 na HiC_scaffold_44 unplaced-scaffold na na JBVQCR010000044.1 <> na Primary Assembly 103836 na HiC_scaffold_45 unplaced-scaffold na na JBVQCR010000045.1 <> na Primary Assembly 533108 na HiC_scaffold_46 unplaced-scaffold na na JBVQCR010000046.1 <> na Primary Assembly 64576 na HiC_scaffold_47 unplaced-scaffold na na JBVQCR010000047.1 <> na Primary Assembly 2266415 na HiC_scaffold_48 unplaced-scaffold na na JBVQCR010000048.1 <> na Primary Assembly 859706 na HiC_scaffold_49 unplaced-scaffold na na JBVQCR010000049.1 <> na Primary Assembly 40889 na HiC_scaffold_50 unplaced-scaffold na na JBVQCR010000050.1 <> na Primary Assembly 462196 na HiC_scaffold_51 unplaced-scaffold na na JBVQCR010000051.1 <> na Primary Assembly 654098 na HiC_scaffold_52 unplaced-scaffold na na JBVQCR010000052.1 <> na Primary Assembly 80586 na HiC_scaffold_53 unplaced-scaffold na na JBVQCR010000053.1 <> na Primary Assembly 172168 na HiC_scaffold_54 unplaced-scaffold na na JBVQCR010000054.1 <> na Primary Assembly 851259 na HiC_scaffold_55 unplaced-scaffold na na JBVQCR010000055.1 <> na Primary Assembly 42164 na HiC_scaffold_56 unplaced-scaffold na na JBVQCR010000056.1 <> na Primary Assembly 189567 na HiC_scaffold_57 unplaced-scaffold na na JBVQCR010000057.1 <> na Primary Assembly 41228 na HiC_scaffold_58 unplaced-scaffold na na JBVQCR010000058.1 <> na Primary Assembly 673978 na HiC_scaffold_59 unplaced-scaffold na na JBVQCR010000059.1 <> na Primary Assembly 85240 na HiC_scaffold_60 unplaced-scaffold na na JBVQCR010000060.1 <> na Primary Assembly 283188 na HiC_scaffold_61 unplaced-scaffold na na JBVQCR010000061.1 <> na Primary Assembly 269577 na HiC_scaffold_62 unplaced-scaffold na na JBVQCR010000062.1 <> na Primary Assembly 102254 na HiC_scaffold_63 unplaced-scaffold na na JBVQCR010000063.1 <> na Primary Assembly 110689 na HiC_scaffold_64 unplaced-scaffold na na JBVQCR010000064.1 <> na Primary Assembly 1270434 na HiC_scaffold_65 unplaced-scaffold na na JBVQCR010000065.1 <> na Primary Assembly 28583 na HiC_scaffold_66 unplaced-scaffold na na JBVQCR010000066.1 <> na Primary Assembly 59398 na HiC_scaffold_67 unplaced-scaffold na na JBVQCR010000067.1 <> na Primary Assembly 25905 na HiC_scaffold_68 unplaced-scaffold na na JBVQCR010000068.1 <> na Primary Assembly 26221 na HiC_scaffold_69 unplaced-scaffold na na JBVQCR010000069.1 <> na Primary Assembly 33926 na HiC_scaffold_70 unplaced-scaffold na na JBVQCR010000070.1 <> na Primary Assembly 47685 na HiC_scaffold_71 unplaced-scaffold na na JBVQCR010000071.1 <> na Primary Assembly 22828 na HiC_scaffold_72 unplaced-scaffold na na JBVQCR010000072.1 <> na Primary Assembly 25415 na HiC_scaffold_73 unplaced-scaffold na na JBVQCR010000073.1 <> na Primary Assembly 9830988 na HiC_scaffold_74 unplaced-scaffold na na JBVQCR010000074.1 <> na Primary Assembly 688740 na HiC_scaffold_75 unplaced-scaffold na na JBVQCR010000075.1 <> na Primary Assembly 64987 na HiC_scaffold_76 unplaced-scaffold na na JBVQCR010000076.1 <> na Primary Assembly 43399 na HiC_scaffold_77 unplaced-scaffold na na JBVQCR010000077.1 <> na Primary Assembly 62543 na HiC_scaffold_78 unplaced-scaffold na na JBVQCR010000078.1 <> na Primary Assembly 2000 na HiC_scaffold_79 unplaced-scaffold na na JBVQCR010000079.1 <> na Primary Assembly 90312 na HiC_scaffold_80 unplaced-scaffold na na JBVQCR010000080.1 <> na Primary Assembly 5000 na HiC_scaffold_81 unplaced-scaffold na na JBVQCR010000081.1 <> na Primary Assembly 288914 na HiC_scaffold_82 unplaced-scaffold na na JBVQCR010000082.1 <> na Primary Assembly 3530224 na HiC_scaffold_83 unplaced-scaffold na na JBVQCR010000083.1 <> na Primary Assembly 24941 na HiC_scaffold_84 unplaced-scaffold na na JBVQCR010000084.1 <> na Primary Assembly 68480 na HiC_scaffold_85 unplaced-scaffold na na JBVQCR010000085.1 <> na Primary Assembly 50221 na HiC_scaffold_86 unplaced-scaffold na na JBVQCR010000086.1 <> na Primary Assembly 5000 na HiC_scaffold_87 unplaced-scaffold na na JBVQCR010000087.1 <> na Primary Assembly 115450 na HiC_scaffold_88 unplaced-scaffold na na JBVQCR010000088.1 <> na Primary Assembly 312605 na HiC_scaffold_89 unplaced-scaffold na na JBVQCR010000089.1 <> na Primary Assembly 745775 na HiC_scaffold_90 unplaced-scaffold na na JBVQCR010000090.1 <> na Primary Assembly 433699 na HiC_scaffold_91 unplaced-scaffold na na JBVQCR010000091.1 <> na Primary Assembly 846385 na HiC_scaffold_92 unplaced-scaffold na na JBVQCR010000092.1 <> na Primary Assembly 1077983 na HiC_scaffold_93 unplaced-scaffold na na JBVQCR010000093.1 <> na Primary Assembly 702751 na HiC_scaffold_94 unplaced-scaffold na na JBVQCR010000094.1 <> na Primary Assembly 451914 na HiC_scaffold_95 unplaced-scaffold na na JBVQCR010000095.1 <> na Primary Assembly 720212 na HiC_scaffold_96 unplaced-scaffold na na JBVQCR010000096.1 <> na Primary Assembly 110250 na HiC_scaffold_97 unplaced-scaffold na na JBVQCR010000097.1 <> na Primary Assembly 494405 na HiC_scaffold_98 unplaced-scaffold na na JBVQCR010000098.1 <> na Primary Assembly 65361 na HiC_scaffold_99 unplaced-scaffold na na JBVQCR010000099.1 <> na Primary Assembly 221917 na HiC_scaffold_100 unplaced-scaffold na na JBVQCR010000100.1 <> na Primary Assembly 881722 na HiC_scaffold_101 unplaced-scaffold na na JBVQCR010000101.1 <> na Primary Assembly 426027 na HiC_scaffold_102 unplaced-scaffold na na JBVQCR010000102.1 <> na Primary Assembly 249414 na HiC_scaffold_103 unplaced-scaffold na na JBVQCR010000103.1 <> na Primary Assembly 164257 na HiC_scaffold_104 unplaced-scaffold na na JBVQCR010000104.1 <> na Primary Assembly 345264 na HiC_scaffold_105 unplaced-scaffold na na JBVQCR010000105.1 <> na Primary Assembly 65519 na HiC_scaffold_106 unplaced-scaffold na na JBVQCR010000106.1 <> na Primary Assembly 30889 na HiC_scaffold_107 unplaced-scaffold na na JBVQCR010000107.1 <> na Primary Assembly 130863 na HiC_scaffold_108 unplaced-scaffold na na JBVQCR010000108.1 <> na Primary Assembly 103030 na HiC_scaffold_109 unplaced-scaffold na na JBVQCR010000109.1 <> na Primary Assembly 30869 na HiC_scaffold_110 unplaced-scaffold na na JBVQCR010000110.1 <> na Primary Assembly 287929 na HiC_scaffold_111 unplaced-scaffold na na JBVQCR010000111.1 <> na Primary Assembly 106786 na HiC_scaffold_112 unplaced-scaffold na na JBVQCR010000112.1 <> na Primary Assembly 13935 na HiC_scaffold_113 unplaced-scaffold na na JBVQCR010000113.1 <> na Primary Assembly 60307 na HiC_scaffold_114 unplaced-scaffold na na JBVQCR010000114.1 <> na Primary Assembly 25106 na HiC_scaffold_115 unplaced-scaffold na na JBVQCR010000115.1 <> na Primary Assembly 16106 na HiC_scaffold_116 unplaced-scaffold na na JBVQCR010000116.1 <> na Primary Assembly 79378 na HiC_scaffold_117 unplaced-scaffold na na JBVQCR010000117.1 <> na Primary Assembly 38958 na HiC_scaffold_118 unplaced-scaffold na na JBVQCR010000118.1 <> na Primary Assembly 47630 na HiC_scaffold_119 unplaced-scaffold na na JBVQCR010000119.1 <> na Primary Assembly 60634 na HiC_scaffold_120 unplaced-scaffold na na JBVQCR010000120.1 <> na Primary Assembly 15097 na HiC_scaffold_121 unplaced-scaffold na na JBVQCR010000121.1 <> na Primary Assembly 15332 na HiC_scaffold_122 unplaced-scaffold na na JBVQCR010000122.1 <> na Primary Assembly 18925 na HiC_scaffold_123 unplaced-scaffold na na JBVQCR010000123.1 <> na Primary Assembly 23710 na HiC_scaffold_124 unplaced-scaffold na na JBVQCR010000124.1 <> na Primary Assembly 17074 na HiC_scaffold_125 unplaced-scaffold na na JBVQCR010000125.1 <> na Primary Assembly 12645 na HiC_scaffold_126 unplaced-scaffold na na JBVQCR010000126.1 <> na Primary Assembly 16540 na HiC_scaffold_127 unplaced-scaffold na na JBVQCR010000127.1 <> na Primary Assembly 11768 na HiC_scaffold_128 unplaced-scaffold na na JBVQCR010000128.1 <> na Primary Assembly 11516 na HiC_scaffold_129 unplaced-scaffold na na JBVQCR010000129.1 <> na Primary Assembly 22798 na HiC_scaffold_130 unplaced-scaffold na na JBVQCR010000130.1 <> na Primary Assembly 33461 na HiC_scaffold_131 unplaced-scaffold na na JBVQCR010000131.1 <> na Primary Assembly 51285 na HiC_scaffold_132 unplaced-scaffold na na JBVQCR010000132.1 <> na Primary Assembly 19833 na HiC_scaffold_133 unplaced-scaffold na na JBVQCR010000133.1 <> na Primary Assembly 22889 na HiC_scaffold_134 unplaced-scaffold na na JBVQCR010000134.1 <> na Primary Assembly 19137 na HiC_scaffold_135 unplaced-scaffold na na JBVQCR010000135.1 <> na Primary Assembly 7116150 na HiC_scaffold_136 unplaced-scaffold na na JBVQCR010000136.1 <> na Primary Assembly 53672 na HiC_scaffold_137 unplaced-scaffold na na JBVQCR010000137.1 <> na Primary Assembly 7393941 na HiC_scaffold_138 unplaced-scaffold na na JBVQCR010000138.1 <> na Primary Assembly 6120101 na HiC_scaffold_139 unplaced-scaffold na na JBVQCR010000139.1 <> na Primary Assembly 46797 na HiC_scaffold_140 unplaced-scaffold na na JBVQCR010000140.1 <> na Primary Assembly 75438 na HiC_scaffold_141 unplaced-scaffold na na JBVQCR010000141.1 <> na Primary Assembly 5323886 na HiC_scaffold_142 unplaced-scaffold na na JBVQCR010000142.1 <> na Primary Assembly 37278 na HiC_scaffold_143 unplaced-scaffold na na JBVQCR010000143.1 <> na Primary Assembly 361608 na HiC_scaffold_144 unplaced-scaffold na na JBVQCR010000144.1 <> na Primary Assembly 5262888 na HiC_scaffold_145 unplaced-scaffold na na JBVQCR010000145.1 <> na Primary Assembly 9482569 na HiC_scaffold_146 unplaced-scaffold na na JBVQCR010000146.1 <> na Primary Assembly 41815 na HiC_scaffold_147 unplaced-scaffold na na JBVQCR010000147.1 <> na Primary Assembly 176752 na HiC_scaffold_148 unplaced-scaffold na na JBVQCR010000148.1 <> na Primary Assembly 119063 na HiC_scaffold_149 unplaced-scaffold na na JBVQCR010000149.1 <> na Primary Assembly 169261 na HiC_scaffold_150 unplaced-scaffold na na JBVQCR010000150.1 <> na Primary Assembly 316483 na HiC_scaffold_151 unplaced-scaffold na na JBVQCR010000151.1 <> na Primary Assembly 170728 na HiC_scaffold_152 unplaced-scaffold na na JBVQCR010000152.1 <> na Primary Assembly 358242 na HiC_scaffold_153 unplaced-scaffold na na JBVQCR010000153.1 <> na Primary Assembly 160618 na HiC_scaffold_154 unplaced-scaffold na na JBVQCR010000154.1 <> na Primary Assembly 168765 na HiC_scaffold_155 unplaced-scaffold na na JBVQCR010000155.1 <> na Primary Assembly 103609 na