# Assembly name: fTraTra1.2 # Organism name: Trachurus trachurus (Atlantic horse mackerel) # Taxid: 36212 # BioSample: SAMEA7524396 # BioProject: PRJEB42172 # Submitter: Wellcome Sanger Institute # Date: 2021-11-26 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAJIMH02 # Genome coverage: 105x # RefSeq category: Representative Genome # GenBank assembly accession: GCA_905171665.2 # Linked assembly: GCA_905171655.2 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_905171664.2 Primary Assembly ## GCA_905171666.2 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome LR991628.1 <> na Primary Assembly 40754244 na SUPER_2 assembled-molecule 2 Chromosome LR991651.1 <> na Primary Assembly 15468355 na SUPER_3 assembled-molecule 3 Chromosome LR991630.1 <> na Primary Assembly 40663798 na SUPER_4 assembled-molecule 4 Chromosome LR991635.1 <> na Primary Assembly 36093002 na SUPER_5 assembled-molecule 5 Chromosome LR991633.1 <> na Primary Assembly 36888734 na SUPER_6 assembled-molecule 6 Chromosome LR991634.1 <> na Primary Assembly 36283071 na SUPER_7 assembled-molecule 7 Chromosome LR991638.1 <> na Primary Assembly 35447499 na SUPER_8 assembled-molecule 8 Chromosome LR991642.1 <> na Primary Assembly 33049929 na SUPER_9 assembled-molecule 9 Chromosome LR991632.1 <> na Primary Assembly 37400736 na SUPER_10 assembled-molecule 10 Chromosome LR991631.1 <> na Primary Assembly 38572790 na SUPER_11 assembled-molecule 11 Chromosome LR991641.1 <> na Primary Assembly 33386963 na SUPER_12 assembled-molecule 12 Chromosome LR991645.1 <> na Primary Assembly 29584266 na SUPER_13 assembled-molecule 13 Chromosome LR991629.1 <> na Primary Assembly 40695139 na SUPER_14 assembled-molecule 14 Chromosome LR991640.1 <> na Primary Assembly 33713437 na SUPER_15 assembled-molecule 15 Chromosome LR991643.1 <> na Primary Assembly 31049438 na SUPER_16 assembled-molecule 16 Chromosome LR991639.1 <> na Primary Assembly 35009248 na SUPER_17 assembled-molecule 17 Chromosome LR991637.1 <> na Primary Assembly 35709794 na SUPER_18 assembled-molecule 18 Chromosome LR991646.1 <> na Primary Assembly 29245829 na SUPER_19 assembled-molecule 19 Chromosome LR991650.1 <> na Primary Assembly 25328826 na SUPER_20 assembled-molecule 20 Chromosome LR991648.1 <> na Primary Assembly 25462409 na SUPER_21 assembled-molecule 21 Chromosome LR991636.1 <> na Primary Assembly 35833567 na SUPER_22 assembled-molecule 22 Chromosome LR991644.1 <> na Primary Assembly 30602059 na SUPER_23 assembled-molecule 23 Chromosome LR991649.1 <> na Primary Assembly 25353499 na SUPER_24 assembled-molecule 24 Chromosome LR991647.1 <> na Primary Assembly 29127247 na contig1 unplaced-scaffold na na CAJIMH020000001.1 <> na Primary Assembly 348724 na contig2 unplaced-scaffold na na CAJIMH020000002.1 <> na Primary Assembly 290645 na contig3 unplaced-scaffold na na CAJIMH020000003.1 <> na Primary Assembly 267628 na contig4 unplaced-scaffold na na CAJIMH020000004.1 <> na Primary Assembly 249848 na contig5 unplaced-scaffold na na CAJIMH020000005.1 <> na Primary Assembly 201419 na contig6 unplaced-scaffold na na CAJIMH020000006.1 <> na Primary Assembly 198714 na contig7 unplaced-scaffold na na CAJIMH020000007.1 <> na Primary Assembly 194557 na contig8 unplaced-scaffold na na CAJIMH020000008.1 <> na Primary Assembly 188453 na contig9 unplaced-scaffold na na CAJIMH020000009.1 <> na Primary Assembly 173841 na contig10 unplaced-scaffold na na CAJIMH020000010.1 <> na Primary Assembly 167942 na contig11 unplaced-scaffold na na CAJIMH020000011.1 <> na Primary Assembly 153739 na contig12 unplaced-scaffold na na CAJIMH020000012.1 <> na Primary Assembly 139074 na contig13 unplaced-scaffold na na CAJIMH020000013.1 <> na Primary Assembly 135232 na contig14 unplaced-scaffold na na CAJIMH020000014.1 <> na Primary Assembly 132338 na contig15 unplaced-scaffold na na CAJIMH020000015.1 <> na Primary Assembly 132290 na contig16 unplaced-scaffold na na CAJIMH020000016.1 <> na Primary Assembly 119305 na contig17 unplaced-scaffold na na CAJIMH020000017.1 <> na Primary Assembly 116709 na contig18 unplaced-scaffold na na CAJIMH020000018.1 <> na Primary Assembly 112556 na contig19 unplaced-scaffold na na CAJIMH020000019.1 <> na Primary Assembly 112208 na contig20 unplaced-scaffold na na CAJIMH020000020.1 <> na Primary Assembly 112180 na contig21 unplaced-scaffold na na CAJIMH020000021.1 <> na Primary Assembly 110550 na contig22 unplaced-scaffold na na CAJIMH020000022.1 <> na Primary Assembly 108722 na contig23 unplaced-scaffold na na CAJIMH020000023.1 <> na Primary Assembly 107612 na contig24 unplaced-scaffold na na CAJIMH020000024.1 <> na Primary Assembly 106395 na contig25 unplaced-scaffold na na CAJIMH020000025.1 <> na Primary Assembly 104180 na contig26 unplaced-scaffold na na CAJIMH020000026.1 <> na Primary Assembly 101549 na contig27 unplaced-scaffold na na CAJIMH020000027.1 <> na Primary Assembly 101284 na contig28 unplaced-scaffold na na CAJIMH020000028.1 <> na Primary Assembly 99469 na contig29 unplaced-scaffold na na CAJIMH020000029.1 <> na Primary Assembly 98366 na contig30 unplaced-scaffold na na CAJIMH020000030.1 <> na Primary Assembly 96375 na contig31 unplaced-scaffold na na CAJIMH020000031.1 <> na Primary Assembly 95307 na contig32 unplaced-scaffold na na CAJIMH020000032.1 <> na Primary Assembly 94408 na contig33 unplaced-scaffold na na CAJIMH020000033.1 <> na Primary Assembly 93761 na contig34 unplaced-scaffold na na CAJIMH020000034.1 <> na Primary Assembly 93529 na contig35 unplaced-scaffold na na CAJIMH020000035.1 <> na Primary Assembly 90609 na contig36 unplaced-scaffold na na CAJIMH020000036.1 <> na Primary Assembly 90036 na contig37 unplaced-scaffold na na CAJIMH020000037.1 <> na Primary Assembly 88684 na contig38 unplaced-scaffold na na CAJIMH020000038.1 <> na Primary Assembly 88666 na contig39 unplaced-scaffold na na CAJIMH020000039.1 <> na Primary Assembly 79199 na contig40 unplaced-scaffold na na CAJIMH020000040.1 <> na Primary Assembly 79158 na contig41 unplaced-scaffold na na CAJIMH020000041.1 <> na Primary Assembly 78305 na contig42 unplaced-scaffold na na CAJIMH020000042.1 <> na Primary Assembly 77602 na contig43 unplaced-scaffold na na CAJIMH020000043.1 <> na Primary Assembly 76529 na contig44 unplaced-scaffold na na CAJIMH020000044.1 <> na Primary Assembly 73890 na contig45 unplaced-scaffold na na CAJIMH020000045.1 <> na Primary Assembly 74925 na contig46 unplaced-scaffold na na CAJIMH020000046.1 <> na Primary Assembly 72304 na contig47 unplaced-scaffold na na CAJIMH020000047.1 <> na Primary Assembly 70644 na contig48 unplaced-scaffold na na CAJIMH020000048.1 <> na Primary Assembly 68434 na contig49 unplaced-scaffold na na CAJIMH020000049.1 <> na Primary Assembly 65915 na contig50 unplaced-scaffold na na CAJIMH020000050.1 <> na Primary Assembly 65112 na contig51 unplaced-scaffold na na CAJIMH020000051.1 <> na Primary Assembly 63883 na contig52 unplaced-scaffold na na CAJIMH020000052.1 <> na Primary Assembly 62391 na contig53 unplaced-scaffold na na CAJIMH020000053.1 <> na Primary Assembly 62290 na contig54 unplaced-scaffold na na CAJIMH020000054.1 <> na Primary Assembly 62510 na contig55 unplaced-scaffold na na CAJIMH020000055.1 <> na Primary Assembly 60621 na contig56 unplaced-scaffold na na CAJIMH020000056.1 <> na Primary Assembly 59952 na contig57 unplaced-scaffold na na CAJIMH020000057.1 <> na Primary Assembly 58667 na contig58 unplaced-scaffold na na CAJIMH020000058.1 <> na Primary Assembly 57176 na contig59 unplaced-scaffold na na CAJIMH020000059.1 <> na Primary Assembly 57052 na contig60 unplaced-scaffold na na CAJIMH020000060.1 <> na Primary Assembly 56724 na contig61 unplaced-scaffold na na CAJIMH020000061.1 <> na Primary Assembly 56191 na contig62 unplaced-scaffold na na CAJIMH020000062.1 <> na Primary Assembly 55119 na contig63 unplaced-scaffold na na CAJIMH020000063.1 <> na Primary Assembly 54578 na contig64 unplaced-scaffold na na CAJIMH020000064.1 <> na Primary Assembly 54063 na contig65 unplaced-scaffold na na CAJIMH020000065.1 <> na Primary Assembly 53918 na contig66 unplaced-scaffold na na CAJIMH020000066.1 <> na Primary Assembly 46342 na contig67 unplaced-scaffold na na CAJIMH020000067.1 <> na Primary Assembly 53790 na contig68 unplaced-scaffold na na CAJIMH020000068.1 <> na Primary Assembly 51701 na contig69 unplaced-scaffold na na CAJIMH020000069.1 <> na Primary Assembly 51516 na contig70 unplaced-scaffold na na CAJIMH020000070.1 <> na Primary Assembly 51142 na contig71 unplaced-scaffold na na CAJIMH020000071.1 <> na Primary Assembly 50290 na contig72 unplaced-scaffold na na CAJIMH020000072.1 <> na Primary Assembly 49778 na contig73 unplaced-scaffold na na CAJIMH020000073.1 <> na Primary Assembly 48866 na contig74 unplaced-scaffold na na CAJIMH020000074.1 <> na Primary Assembly 46869 na contig75 unplaced-scaffold na na CAJIMH020000075.1 <> na Primary Assembly 46225 na contig76 unplaced-scaffold na na CAJIMH020000076.1 <> na Primary Assembly 45989 na contig77 unplaced-scaffold na na CAJIMH020000077.1 <> na Primary Assembly 45691 na contig78 unplaced-scaffold na na CAJIMH020000078.1 <> na Primary Assembly 43581 na contig79 unplaced-scaffold na na CAJIMH020000079.1 <> na Primary Assembly 43488 na contig80 unplaced-scaffold na na CAJIMH020000080.1 <> na Primary Assembly 43561 na contig81 unplaced-scaffold na na CAJIMH020000081.1 <> na Primary Assembly 43128 na contig82 unplaced-scaffold na na CAJIMH020000082.1 <> na Primary Assembly 43095 na contig83 unplaced-scaffold na na CAJIMH020000083.1 <> na Primary Assembly 42685 na contig84 unplaced-scaffold na na CAJIMH020000084.1 <> na Primary Assembly 41429 na contig85 unplaced-scaffold na na CAJIMH020000085.1 <> na Primary Assembly 41331 na contig86 unplaced-scaffold na na CAJIMH020000086.1 <> na Primary Assembly 41511 na contig87 unplaced-scaffold na na CAJIMH020000087.1 <> na Primary Assembly 41128 na contig88 unplaced-scaffold na na CAJIMH020000088.1 <> na Primary Assembly 41165 na contig89 unplaced-scaffold na na CAJIMH020000089.1 <> na Primary Assembly 40735 na contig90 unplaced-scaffold na na CAJIMH020000090.1 <> na Primary Assembly 39543 na contig91 unplaced-scaffold na na CAJIMH020000091.1 <> na Primary Assembly 38965 na contig92 unplaced-scaffold na na CAJIMH020000092.1 <> na Primary Assembly 38663 na contig93 unplaced-scaffold na na CAJIMH020000093.1 <> na Primary Assembly 38565 na contig94 unplaced-scaffold na na CAJIMH020000094.1 <> na Primary Assembly 37383 na contig95 unplaced-scaffold na na CAJIMH020000095.1 <> na Primary Assembly 37228 na contig96 unplaced-scaffold na na CAJIMH020000096.1 <> na Primary Assembly 36497 na contig97 unplaced-scaffold na na CAJIMH020000097.1 <> na Primary Assembly 35406 na contig98 unplaced-scaffold na na CAJIMH020000098.1 <> na Primary Assembly 35435 na contig99 unplaced-scaffold na na CAJIMH020000099.1 <> na Primary Assembly 35093 na contig100 unplaced-scaffold na na CAJIMH020000100.1 <> na Primary Assembly 34932 na contig101 unplaced-scaffold na na CAJIMH020000101.1 <> na Primary Assembly 35015 na contig102 unplaced-scaffold na na CAJIMH020000102.1 <> na Primary Assembly 34568 na contig103 unplaced-scaffold na na CAJIMH020000103.1 <> na Primary Assembly 34416 na contig104 unplaced-scaffold na na CAJIMH020000104.1 <> na Primary Assembly 33988 na contig105 unplaced-scaffold na na CAJIMH020000105.1 <> na Primary Assembly 33186 na contig106 unplaced-scaffold na na CAJIMH020000106.1 <> na Primary Assembly 32578 na contig107 unplaced-scaffold na na CAJIMH020000107.1 <> na Primary Assembly 31926 na contig108 unplaced-scaffold na na CAJIMH020000108.1 <> na Primary Assembly 31669 na contig109 unplaced-scaffold na na CAJIMH020000109.1 <> na Primary Assembly 31052 na contig110 unplaced-scaffold na na CAJIMH020000110.1 <> na Primary Assembly 30086 na contig111 unplaced-scaffold na na CAJIMH020000111.1 <> na Primary Assembly 29089 na contig112 unplaced-scaffold na na CAJIMH020000112.1 <> na Primary Assembly 28740 na contig113 unplaced-scaffold na na CAJIMH020000113.1 <> na Primary Assembly 28713 na contig114 unplaced-scaffold na na CAJIMH020000114.1 <> na Primary Assembly 28269 na contig115 unplaced-scaffold na na CAJIMH020000115.1 <> na Primary Assembly 27400 na contig116 unplaced-scaffold na na CAJIMH020000116.1 <> na Primary Assembly 26972 na contig117 unplaced-scaffold na na CAJIMH020000117.1 <> na Primary Assembly 26919 na contig118 unplaced-scaffold na na CAJIMH020000118.1 <> na Primary Assembly 26297 na contig119 unplaced-scaffold na na CAJIMH020000119.1 <> na Primary Assembly 23073 na contig120 unplaced-scaffold na na CAJIMH020000120.1 <> na Primary Assembly 22818 na contig121 unplaced-scaffold na na CAJIMH020000121.1 <> na Primary Assembly 22680 na contig122 unplaced-scaffold na na CAJIMH020000122.1 <> na Primary Assembly 18133 na contig123 unplaced-scaffold na na CAJIMH020000123.1 <> na Primary Assembly 17600 na contig124 unplaced-scaffold na na CAJIMH020000124.1 <> na Primary Assembly 11117 na contig125 unplaced-scaffold na na CAJIMH020000125.1 <> na Primary Assembly 9798 na contig126 unplaced-scaffold na na CAJIMH020000126.1 <> na Primary Assembly 247025 na contig127 unplaced-scaffold na na CAJIMH020000127.1 <> na Primary Assembly 526359 na contig128 unplaced-scaffold na na CAJIMH020000128.1 <> na Primary Assembly 477214 na scaffold_MT assembled-molecule MT Mitochondrion LR991652.1 <> na non-nuclear 16561 na