track assembly longLabel Assembly shortLabel Assembly visibility pack colorByStrand 150,100,30 230,170,40 color 150,100,30 altColor 230,170,40 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.assembly.bb type bigBed 6 html html/GCA_905319855.2_mCanLor1.2.assembly searchIndex name searchTrix ixIxx/GCA_905319855.2_mCanLor1.2.assembly.ix url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: group map track cytoBandIdeo shortLabel Chromosome Band (Ideogram) longLabel Ideogram for Orientation group map visibility dense type bigBed 4 + bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.cytoBand.bb track gc5Base shortLabel GC Percent longLabel GC Percent in 5-Base Windows group map visibility full autoScale Off maxHeightPixels 128:36:16 graphTypeDefault Bar gridDefault OFF windowingFunction Mean color 0,0,0 altColor 128,128,128 viewLimits 30:70 type bigWig 0 100 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.gc5Base.bw html html/GCA_905319855.2_mCanLor1.2.gc5Base track tanDups shortLabel Tandem Dups longLabel Paired identical sequences compositeTrack on visibility hide type bigBed 12 group map html html/GCA_905319855.2_mCanLor1.2.tanDups track gapOverlap parent tanDups on shortLabel Gap Overlaps longLabel Paired exactly identical sequence on each side of a gap bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.gapOverlap.bb type bigBed 12 track tandemDups parent tanDups on shortLabel Tandem Dups longLabel Paired exactly identical sequence survey over entire genome assembly bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.tandemDups.bb type bigBed 12 track repeatMasker shortLabel RepeatMasker longLabel RepeatMasker Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.rmsk.bb xrefDataUrl bbi/GCA_905319855.2_mCanLor1.2.rmsk.align.bb maxWindowToDraw 5000000 html html/GCA_905319855.2_mCanLor1.2.repeatMasker track repeatModeler shortLabel RepeatModeler longLabel RepeatModeler Repetitive Elements type bigRmsk 9 + visibility pack group varRep bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.rModel.bb xrefDataUrl bbi/GCA_905319855.2_mCanLor1.2.rModel.align.bb maxWindowToDraw 5000000 html html/GCA_905319855.2_mCanLor1.2.repeatModeler track simpleRepeat shortLabel Simple Repeats longLabel Simple Tandem Repeats by TRF group varRep visibility dense type bigBed 4 + bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.simpleRepeat.bb html html/GCA_905319855.2_mCanLor1.2.simpleRepeat track cpgIslands compositeTrack on shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) group regulation visibility pack type bigBed 4 + html html/GCA_905319855.2_mCanLor1.2.cpgIslands track cpgIslandExt parent cpgIslands off shortLabel CpG Islands longLabel CpG Islands (Islands < 300 Bases are Light Green) type bigBed 4 + priority 1 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.cpgIslandExt.bb track cpgIslandExtUnmasked parent cpgIslands on shortLabel Unmasked CpG longLabel CpG Islands on All Sequence (Islands < 300 Bases are Light Green) type bigBed 4 + priority 2 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.cpgIslandExtUnmasked.bb track windowMasker shortLabel WM + SDust longLabel Genomic Intervals Masked by WindowMasker + SDust group varRep visibility dense type bigBed 3 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.windowMasker.bb html html/GCA_905319855.2_mCanLor1.2.windowMasker track allGaps shortLabel All Gaps longLabel All gaps of unknown nucleotides (N's), including AGP annotated gaps group map visibility dense type bigBed 3 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.allGaps.bb html html/GCA_905319855.2_mCanLor1.2.allGaps track augustus shortLabel Augustus longLabel Augustus Gene Predictions group genes visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.augustus.bb html html/GCA_905319855.2_mCanLor1.2.augustus track xenoRefGene shortLabel RefSeq mRNAs longLabel RefSeq mRNAs mapped to this assembly group rna visibility pack color 180,0,0 type bigGenePred bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.xenoRefGene.bb url https://www.ncbi.nlm.nih.gov/nuccore/$$ urlLabel NCBI Nucleotide database: labelFields name,geneName,geneName2 defaultLabelFields geneName searchIndex name searchTrix ixIxx/GCA_905319855.2_mCanLor1.2.xenoRefGene.ix html html/GCA_905319855.2_mCanLor1.2.xenoRefGene track ensGene shortLabel Ensembl genes longLabel Ensembl genes 2022_01 group genes priority 40 visibility pack color 150,0,0 itemRgb on type bigGenePred bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.ensGene.bb searchTrix ixIxx/GCA_905319855.2_mCanLor1.2.ensGene.ix searchIndex name labelFields name,name2 defaultLabelFields name2 baseColorUseCds given baseColorDefault genomicCodons labelSeperator " " html html/GCA_905319855.2_mCanLor1.2.ensGene ############################################################################## # GCF_000002285.5 - gray wolf - Canis lupus - taxId: 9612 ############################################################################## track chainNetGCF_000002285.5 compositeTrack on shortLabel gray wolf Chain/Net longLabel gray wolf (2021-03-26), Chain and Net Alignments subGroup1 view Views chain=Chain net=Net dragAndDrop subTracks visibility hide group compGeno priority 100.1 color 0,0,0 altColor 100,50,0 type bed 3 sortOrder view=+ otherDb GCF_000002285.5 html html/GCA_905319855.2_mCanLor1.2.chainNet track chainNetGCF_000002285.5Viewchain shortLabel Chain view chain visibility pack parent chainNetGCF_000002285.5 spectrum on track chainGCF_000002285.5 parent chainNetGCF_000002285.5Viewchain subGroups view=chain shortLabel gray wolf Chain longLabel gray wolf (2021-03-26) Chained Alignments type bigChain GCF_000002285.5 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.chainGCF_000002285.5.bb linkDataUrl bbi/GCA_905319855.2_mCanLor1.2.chainGCF_000002285.5Link.bb priority 1 track chainSynGCF_000002285.5 parent chainNetGCF_000002285.5Viewchain subGroups view=chain shortLabel gray wolf synChain longLabel gray wolf (2021-03-26) Syntenic Chained Alignments type bigChain GCF_000002285.5 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.chainSynGCF_000002285.5.bb linkDataUrl bbi/GCA_905319855.2_mCanLor1.2.chainSynGCF_000002285.5Link.bb priority 2 track chainRBestGCF_000002285.5 parent chainNetGCF_000002285.5Viewchain subGroups view=chain shortLabel gray wolf rbChain longLabel gray wolf (2021-03-26) Reciprocal Best Chained Alignments type bigChain GCF_000002285.5 bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.chainRBestGCF_000002285.5.bb linkDataUrl bbi/GCA_905319855.2_mCanLor1.2.chainRBestGCF_000002285.5Link.bb priority 3 track mafNetGCF_000002285.5Viewnet shortLabel Net view net visibility full parent chainNetGCF_000002285.5 track netGCF_000002285.5 parent mafNetGCF_000002285.5Viewnet subGroups view=net shortLabel gray wolf net longLabel gray wolf (2021-03-26) Net Alignment type bigMaf bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.GCF_000002285.5.net.bb summary bbi/GCA_905319855.2_mCanLor1.2.GCF_000002285.5.net.summary.bb speciesOrder GCF_000002285.5 priority 4 track synNetGCF_000002285.5 parent mafNetGCF_000002285.5Viewnet subGroups view=net shortLabel gray wolf synNet longLabel gray wolf (2021-03-26) Syntenic Net Alignment type bigMaf bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.GCF_000002285.5.synNet.bb summary bbi/GCA_905319855.2_mCanLor1.2.GCF_000002285.5.synNet.summary.bb speciesOrder GCF_000002285.5 priority 5 track rbestNetGCF_000002285.5 parent mafNetGCF_000002285.5Viewnet subGroups view=net shortLabel gray wolf rbestNet longLabel gray wolf (2021-03-26) Reciprocal Best Net Alignment type bigMaf bigDataUrl bbi/GCA_905319855.2_mCanLor1.2.GCF_000002285.5.rbestNet.bb summary bbi/GCA_905319855.2_mCanLor1.2.GCF_000002285.5.rbestNet.summary.bb speciesOrder GCF_000002285.5 priority 6