# Assembly name: jaMonCapi2.1 # Organism name: Montipora capitata (stony corals) # Taxid: 46704 # BioSample: SAMEA12815090 # BioProject: PRJEB59456 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2023-04-08 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CASBPP01 # Assembly method: various # Genome coverage: 52x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_949126865.1 # Linked assembly: GCA_949126885.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_949126864.1 Primary Assembly ## GCA_949126866.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OX421445.1 <> na Primary Assembly 67259869 na SUPER_2 assembled-molecule 2 Chromosome OX421446.1 <> na Primary Assembly 66624440 na SUPER_3 assembled-molecule 3 Chromosome OX421447.1 <> na Primary Assembly 65466317 na SUPER_4 assembled-molecule 4 Chromosome OX421448.1 <> na Primary Assembly 63882088 na SUPER_5 assembled-molecule 5 Chromosome OX421449.1 <> na Primary Assembly 54427358 na SUPER_6 assembled-molecule 6 Chromosome OX421450.1 <> na Primary Assembly 47608193 na SUPER_7 assembled-molecule 7 Chromosome OX421451.1 <> na Primary Assembly 46186267 na SUPER_8 assembled-molecule 8 Chromosome OX421452.1 <> na Primary Assembly 45683084 na SUPER_9 assembled-molecule 9 Chromosome OX421453.1 <> na Primary Assembly 43338559 na SUPER_10 assembled-molecule 10 Chromosome OX421454.1 <> na Primary Assembly 40290779 na SUPER_11 assembled-molecule 11 Chromosome OX421455.1 <> na Primary Assembly 38621353 na SUPER_12 assembled-molecule 12 Chromosome OX421456.1 <> na Primary Assembly 38220520 na SUPER_13 assembled-molecule 13 Chromosome OX421457.1 <> na Primary Assembly 34804181 na SUPER_14 assembled-molecule 14 Chromosome OX421458.1 <> na Primary Assembly 30825895 na SUPER_13_unloc_1 unlocalized-scaffold 13 Chromosome CASBPP010000001.1 <> na Primary Assembly 1004584 na scaffold_71 unplaced-scaffold na na CASBPP010000002.1 <> na Primary Assembly 58815 na scaffold_39 unplaced-scaffold na na CASBPP010000003.1 <> na Primary Assembly 106604 na scaffold_44 unplaced-scaffold na na CASBPP010000004.1 <> na Primary Assembly 96000 na scaffold_21 unplaced-scaffold na na CASBPP010000005.1 <> na Primary Assembly 278137 na scaffold_23 unplaced-scaffold na na CASBPP010000006.1 <> na Primary Assembly 253749 na scaffold_27 unplaced-scaffold na na CASBPP010000007.1 <> na Primary Assembly 164394 na scaffold_28 unplaced-scaffold na na CASBPP010000008.1 <> na Primary Assembly 159152 na scaffold_30 unplaced-scaffold na na CASBPP010000009.1 <> na Primary Assembly 155352 na scaffold_32 unplaced-scaffold na na CASBPP010000010.1 <> na Primary Assembly 139533 na scaffold_34 unplaced-scaffold na na CASBPP010000011.1 <> na Primary Assembly 127000 na scaffold_35 unplaced-scaffold na na CASBPP010000012.1 <> na Primary Assembly 125904 na scaffold_37 unplaced-scaffold na na CASBPP010000013.1 <> na Primary Assembly 109617 na scaffold_38 unplaced-scaffold na na CASBPP010000014.1 <> na Primary Assembly 108300 na scaffold_47 unplaced-scaffold na na CASBPP010000015.1 <> na Primary Assembly 89000 na scaffold_48 unplaced-scaffold na na CASBPP010000016.1 <> na Primary Assembly 88000 na scaffold_49 unplaced-scaffold na na CASBPP010000017.1 <> na Primary Assembly 87528 na scaffold_53 unplaced-scaffold na na CASBPP010000018.1 <> na Primary Assembly 83068 na scaffold_54 unplaced-scaffold na na CASBPP010000019.1 <> na Primary Assembly 81226 na scaffold_55 unplaced-scaffold na na CASBPP010000020.1 <> na Primary Assembly 79000 na scaffold_56 unplaced-scaffold na na CASBPP010000021.1 <> na Primary Assembly 78000 na scaffold_57 unplaced-scaffold na na CASBPP010000022.1 <> na Primary Assembly 76315 na scaffold_59 unplaced-scaffold na na CASBPP010000023.1 <> na Primary Assembly 73623 na scaffold_60 unplaced-scaffold na na CASBPP010000024.1 <> na Primary Assembly 72850 na scaffold_61 unplaced-scaffold na na CASBPP010000025.1 <> na Primary Assembly 71212 na scaffold_62 unplaced-scaffold na na CASBPP010000026.1 <> na Primary Assembly 70000 na scaffold_64 unplaced-scaffold na na CASBPP010000027.1 <> na Primary Assembly 67000 na scaffold_65 unplaced-scaffold na na CASBPP010000028.1 <> na Primary Assembly 63685 na scaffold_69 unplaced-scaffold na na CASBPP010000029.1 <> na Primary Assembly 60537 na scaffold_72 unplaced-scaffold na na CASBPP010000030.1 <> na Primary Assembly 58000 na scaffold_73 unplaced-scaffold na na CASBPP010000031.1 <> na Primary Assembly 57546 na scaffold_77 unplaced-scaffold na na CASBPP010000032.1 <> na Primary Assembly 56000 na scaffold_78 unplaced-scaffold na na CASBPP010000033.1 <> na Primary Assembly 55510 na scaffold_82 unplaced-scaffold na na CASBPP010000034.1 <> na Primary Assembly 53576 na scaffold_83 unplaced-scaffold na na CASBPP010000035.1 <> na Primary Assembly 53268 na scaffold_85 unplaced-scaffold na na CASBPP010000036.1 <> na Primary Assembly 52000 na scaffold_99 unplaced-scaffold na na CASBPP010000037.1 <> na Primary Assembly 38038 na scaffold_100 unplaced-scaffold na na CASBPP010000038.1 <> na Primary Assembly 37937 na scaffold_102 unplaced-scaffold na na CASBPP010000039.1 <> na Primary Assembly 36803 na scaffold_108 unplaced-scaffold na na CASBPP010000040.1 <> na Primary Assembly 33658 na scaffold_113 unplaced-scaffold na na CASBPP010000041.1 <> na Primary Assembly 32781 na scaffold_117 unplaced-scaffold na na CASBPP010000042.1 <> na Primary Assembly 31296 na scaffold_118 unplaced-scaffold na na CASBPP010000043.1 <> na Primary Assembly 31163 na scaffold_122 unplaced-scaffold na na CASBPP010000044.1 <> na Primary Assembly 30463 na scaffold_126 unplaced-scaffold na na CASBPP010000045.1 <> na Primary Assembly 28643 na scaffold_129 unplaced-scaffold na na CASBPP010000046.1 <> na Primary Assembly 27958 na scaffold_131 unplaced-scaffold na na CASBPP010000047.1 <> na Primary Assembly 26749 na scaffold_132 unplaced-scaffold na na CASBPP010000048.1 <> na Primary Assembly 26622 na scaffold_139 unplaced-scaffold na na CASBPP010000049.1 <> na Primary Assembly 24993 na scaffold_140 unplaced-scaffold na na CASBPP010000050.1 <> na Primary Assembly 24924 na scaffold_142 unplaced-scaffold na na CASBPP010000051.1 <> na Primary Assembly 24660 na scaffold_143 unplaced-scaffold na na CASBPP010000052.1 <> na Primary Assembly 24579 na scaffold_144 unplaced-scaffold na na CASBPP010000053.1 <> na Primary Assembly 24202 na scaffold_145 unplaced-scaffold na na CASBPP010000054.1 <> na Primary Assembly 23970 na scaffold_147 unplaced-scaffold na na CASBPP010000055.1 <> na Primary Assembly 23715 na scaffold_148 unplaced-scaffold na na CASBPP010000056.1 <> na Primary Assembly 23579 na scaffold_150 unplaced-scaffold na na CASBPP010000057.1 <> na Primary Assembly 23509 na scaffold_151 unplaced-scaffold na na CASBPP010000058.1 <> na Primary Assembly 23438 na scaffold_152 unplaced-scaffold na na CASBPP010000059.1 <> na Primary Assembly 23390 na scaffold_153 unplaced-scaffold na na CASBPP010000060.1 <> na Primary Assembly 23286 na scaffold_156 unplaced-scaffold na na CASBPP010000061.1 <> na Primary Assembly 22849 na scaffold_159 unplaced-scaffold na na CASBPP010000062.1 <> na Primary Assembly 22315 na scaffold_160 unplaced-scaffold na na CASBPP010000063.1 <> na Primary Assembly 22231 na scaffold_162 unplaced-scaffold na na CASBPP010000064.1 <> na Primary Assembly 21863 na scaffold_164 unplaced-scaffold na na CASBPP010000065.1 <> na Primary Assembly 21498 na scaffold_165 unplaced-scaffold na na CASBPP010000066.1 <> na Primary Assembly 21383 na scaffold_166 unplaced-scaffold na na CASBPP010000067.1 <> na Primary Assembly 21310 na scaffold_167 unplaced-scaffold na na CASBPP010000068.1 <> na Primary Assembly 21224 na scaffold_168 unplaced-scaffold na na CASBPP010000069.1 <> na Primary Assembly 21143 na scaffold_170 unplaced-scaffold na na CASBPP010000070.1 <> na Primary Assembly 20975 na scaffold_173 unplaced-scaffold na na CASBPP010000071.1 <> na Primary Assembly 20864 na scaffold_174 unplaced-scaffold na na CASBPP010000072.1 <> na Primary Assembly 20756 na scaffold_175 unplaced-scaffold na na CASBPP010000073.1 <> na Primary Assembly 20719 na scaffold_176 unplaced-scaffold na na CASBPP010000074.1 <> na Primary Assembly 20666 na scaffold_177 unplaced-scaffold na na CASBPP010000075.1 <> na Primary Assembly 20584 na scaffold_178 unplaced-scaffold na na CASBPP010000076.1 <> na Primary Assembly 20475 na scaffold_179 unplaced-scaffold na na CASBPP010000077.1 <> na Primary Assembly 20422 na scaffold_183 unplaced-scaffold na na CASBPP010000078.1 <> na Primary Assembly 19969 na scaffold_185 unplaced-scaffold na na CASBPP010000079.1 <> na Primary Assembly 19863 na scaffold_188 unplaced-scaffold na na CASBPP010000080.1 <> na Primary Assembly 19493 na scaffold_194 unplaced-scaffold na na CASBPP010000081.1 <> na Primary Assembly 18707 na scaffold_198 unplaced-scaffold na na CASBPP010000082.1 <> na Primary Assembly 18398 na scaffold_199 unplaced-scaffold na na CASBPP010000083.1 <> na Primary Assembly 18218 na scaffold_201 unplaced-scaffold na na CASBPP010000084.1 <> na Primary Assembly 18062 na scaffold_203 unplaced-scaffold na na CASBPP010000085.1 <> na Primary Assembly 17939 na scaffold_204 unplaced-scaffold na na CASBPP010000086.1 <> na Primary Assembly 17731 na scaffold_208 unplaced-scaffold na na CASBPP010000087.1 <> na Primary Assembly 17437 na scaffold_209 unplaced-scaffold na na CASBPP010000088.1 <> na Primary Assembly 17188 na scaffold_210 unplaced-scaffold na na CASBPP010000089.1 <> na Primary Assembly 17185 na scaffold_215 unplaced-scaffold na na CASBPP010000090.1 <> na Primary Assembly 16967 na scaffold_216 unplaced-scaffold na na CASBPP010000091.1 <> na Primary Assembly 16899 na scaffold_218 unplaced-scaffold na na CASBPP010000092.1 <> na Primary Assembly 16698 na scaffold_220 unplaced-scaffold na na CASBPP010000093.1 <> na Primary Assembly 16646 na scaffold_222 unplaced-scaffold na na CASBPP010000094.1 <> na Primary Assembly 16525 na scaffold_223 unplaced-scaffold na na CASBPP010000095.1 <> na Primary Assembly 16455 na scaffold_229 unplaced-scaffold na na CASBPP010000096.1 <> na Primary Assembly 16081 na scaffold_234 unplaced-scaffold na na CASBPP010000097.1 <> na Primary Assembly 15871 na scaffold_235 unplaced-scaffold na na CASBPP010000098.1 <> na Primary Assembly 15663 na scaffold_243 unplaced-scaffold na na CASBPP010000099.1 <> na Primary Assembly 14768 na scaffold_247 unplaced-scaffold na na CASBPP010000100.1 <> na Primary Assembly 14419 na scaffold_251 unplaced-scaffold na na CASBPP010000101.1 <> na Primary Assembly 14055 na scaffold_254 unplaced-scaffold na na CASBPP010000102.1 <> na Primary Assembly 13630 na scaffold_273 unplaced-scaffold na na CASBPP010000103.1 <> na Primary Assembly 11947 na scaffold_289 unplaced-scaffold na na CASBPP010000104.1 <> na Primary Assembly 11235 na scaffold_303 unplaced-scaffold na na CASBPP010000105.1 <> na Primary Assembly 9944 na scaffold_307 unplaced-scaffold na na CASBPP010000106.1 <> na Primary Assembly 9733 na scaffold_328 unplaced-scaffold na na CASBPP010000107.1 <> na Primary Assembly 7862 na scaffold_191 unplaced-scaffold na na CASBPP010000108.1 <> na Primary Assembly 19049 na scaffold_207 unplaced-scaffold na na CASBPP010000109.1 <> na Primary Assembly 17463 na scaffold_217 unplaced-scaffold na na CASBPP010000110.1 <> na Primary Assembly 16842 na scaffold_228 unplaced-scaffold na na CASBPP010000111.1 <> na Primary Assembly 16170 na scaffold_242 unplaced-scaffold na na CASBPP010000112.1 <> na Primary Assembly 14769 na scaffold_249 unplaced-scaffold na na CASBPP010000113.1 <> na Primary Assembly 14389 na scaffold_267 unplaced-scaffold na na CASBPP010000114.1 <> na Primary Assembly 12607 na scaffold_277 unplaced-scaffold na na CASBPP010000115.1 <> na Primary Assembly 11825 na scaffold_301 unplaced-scaffold na na CASBPP010000116.1 <> na Primary Assembly 9960 na scaffold_304 unplaced-scaffold na na CASBPP010000117.1 <> na Primary Assembly 9907 na scaffold_326 unplaced-scaffold na na CASBPP010000118.1 <> na Primary Assembly 8000 na scaffold_MT_1 assembled-molecule MT Mitochondrion OX421459.1 <> na non-nuclear 17868 na