# Assembly name: fPunPun2.1 # Organism name: Pungitius pungitius (ninespine stickleback) # Taxid: 134920 # BioSample: SAMEA11296545 # BioProject: PRJEB60134 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2023-04-08 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CASGFK01 # Assembly method: various # Genome coverage: 61x # Sequencing technology: PacBio,Arima2 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_949316345.1 # RefSeq assembly accession: GCF_949316345.1 # RefSeq assembly and GenBank assemblies identical: no # Linked assembly: GCA_949316245.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_949316344.1 GCF_949316344.1 Primary Assembly ## GCA_949316346.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OX438541.1 = NC_084900.1 Primary Assembly 35745030 na SUPER_2 assembled-molecule 2 Chromosome OX438542.1 = NC_084901.1 Primary Assembly 34228147 na SUPER_3 assembled-molecule 3 Chromosome OX438543.1 = NC_084902.1 Primary Assembly 30300527 na SUPER_4 assembled-molecule 4 Chromosome OX438544.1 = NC_084903.1 Primary Assembly 25922346 na SUPER_5 assembled-molecule 5 Chromosome OX438545.1 = NC_084904.1 Primary Assembly 24130299 na SUPER_6 assembled-molecule 6 Chromosome OX438546.1 = NC_084905.1 Primary Assembly 22601025 na SUPER_7 assembled-molecule 7 Chromosome OX438547.1 = NC_084906.1 Primary Assembly 21937541 na SUPER_8 assembled-molecule 8 Chromosome OX438548.1 = NC_084907.1 Primary Assembly 22486355 na SUPER_9 assembled-molecule 9 Chromosome OX438549.1 = NC_084908.1 Primary Assembly 21811056 na SUPER_10 assembled-molecule 10 Chromosome OX438550.1 = NC_084909.1 Primary Assembly 21005440 na SUPER_11 assembled-molecule 11 Chromosome OX438551.1 = NC_084910.1 Primary Assembly 20936075 na SUPER_12 assembled-molecule 12 Chromosome OX438552.1 = NC_084911.1 Primary Assembly 20223406 na SUPER_13 assembled-molecule 13 Chromosome OX438553.1 = NC_084912.1 Primary Assembly 19614491 na SUPER_14 assembled-molecule 14 Chromosome OX438554.1 = NC_084913.1 Primary Assembly 19551821 na SUPER_15 assembled-molecule 15 Chromosome OX438555.1 = NC_084914.1 Primary Assembly 19439896 na SUPER_16 assembled-molecule 16 Chromosome OX438556.1 = NC_084915.1 Primary Assembly 18952261 na SUPER_17 assembled-molecule 17 Chromosome OX438557.1 = NC_084916.1 Primary Assembly 18484708 na SUPER_18 assembled-molecule 18 Chromosome OX438558.1 = NC_084917.1 Primary Assembly 18068722 na SUPER_19 assembled-molecule 19 Chromosome OX438559.1 = NC_084918.1 Primary Assembly 16800118 na SUPER_20 assembled-molecule 20 Chromosome OX438560.1 = NC_084919.1 Primary Assembly 16732017 na SUPER_21 assembled-molecule 21 Chromosome OX438561.1 = NC_084920.1 Primary Assembly 16562394 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome CASGFK010000001.1 = NW_026909782.1 Primary Assembly 549560 na scaffold_142 unplaced-scaffold na na CASGFK010000002.1 = NW_026909783.1 Primary Assembly 17796 na scaffold_38 unplaced-scaffold na na CASGFK010000003.1 = NW_026909784.1 Primary Assembly 322000 na scaffold_128 unplaced-scaffold na na CASGFK010000004.1 = NW_026909785.1 Primary Assembly 20462 na scaffold_147 unplaced-scaffold na na CASGFK010000005.1 = NW_026909786.1 Primary Assembly 16975 na scaffold_180 unplaced-scaffold na na CASGFK010000006.1 = NW_026909787.1 Primary Assembly 2000 na scaffold_62 unplaced-scaffold na na CASGFK010000007.1 = NW_026909788.1 Primary Assembly 95775 na scaffold_167 unplaced-scaffold na na CASGFK010000008.1 = NW_026909789.1 Primary Assembly 13884 na scaffold_121 unplaced-scaffold na na CASGFK010000009.1 = NW_026909790.1 Primary Assembly 22749 na scaffold_162 unplaced-scaffold na na CASGFK010000010.1 = NW_026909791.1 Primary Assembly 14573 na scaffold_106 unplaced-scaffold na na CASGFK010000011.1 = NW_026909792.1 Primary Assembly 26629 na scaffold_83 unplaced-scaffold na na CASGFK010000012.1 = NW_026909793.1 Primary Assembly 45259 na scaffold_69 unplaced-scaffold na na CASGFK010000013.1 = NW_026909794.1 Primary Assembly 69432 na scaffold_80 unplaced-scaffold na na CASGFK010000014.1 = NW_026909795.1 Primary Assembly 50818 na scaffold_55 unplaced-scaffold na na CASGFK010000015.1 = NW_026909796.1 Primary Assembly 110000 na scaffold_136 unplaced-scaffold na na CASGFK010000016.1 = NW_026909797.1 Primary Assembly 19227 na scaffold_175 unplaced-scaffold na na CASGFK010000017.1 = NW_026909798.1 Primary Assembly 7948 na scaffold_76 unplaced-scaffold na na CASGFK010000018.1 = NW_026909799.1 Primary Assembly 55138 na scaffold_114 unplaced-scaffold na na CASGFK010000019.1 = NW_026909800.1 Primary Assembly 23830 na scaffold_74 unplaced-scaffold na na CASGFK010000020.1 = NW_026909801.1 Primary Assembly 59748 na scaffold_48 unplaced-scaffold na na CASGFK010000021.1 = NW_026909802.1 Primary Assembly 157000 na scaffold_169 unplaced-scaffold na na CASGFK010000022.1 = NW_026909803.1 Primary Assembly 12525 na scaffold_118 unplaced-scaffold na na CASGFK010000023.1 = NW_026909804.1 Primary Assembly 23187 na scaffold_85 unplaced-scaffold na na CASGFK010000024.1 = NW_026909805.1 Primary Assembly 43188 na scaffold_50 unplaced-scaffold na na CASGFK010000025.1 = NW_026909806.1 Primary Assembly 144000 na scaffold_111 unplaced-scaffold na na CASGFK010000026.1 = NW_026909807.1 Primary Assembly 24298 na scaffold_37 unplaced-scaffold na na CASGFK010000027.1 = NW_026909808.1 Primary Assembly 431789 na scaffold_149 unplaced-scaffold na na CASGFK010000028.1 = NW_026909809.1 Primary Assembly 16330 na scaffold_170 unplaced-scaffold na na CASGFK010000029.1 = NW_026909810.1 Primary Assembly 11110 na scaffold_143 unplaced-scaffold na na CASGFK010000030.1 = NW_026909811.1 Primary Assembly 17351 na scaffold_29 unplaced-scaffold na na CASGFK010000031.1 = NW_026909812.1 Primary Assembly 889921 na scaffold_96 unplaced-scaffold na na CASGFK010000032.1 = NW_026909813.1 Primary Assembly 34490 na scaffold_156 unplaced-scaffold na na CASGFK010000033.1 = NW_026909814.1 Primary Assembly 15349 na scaffold_53 unplaced-scaffold na na CASGFK010000034.1 = NW_026909815.1 Primary Assembly 128445 na scaffold_124 unplaced-scaffold na na CASGFK010000035.1 = NW_026909816.1 Primary Assembly 21278 na scaffold_163 unplaced-scaffold na na CASGFK010000036.1 = NW_026909817.1 Primary Assembly 14360 na scaffold_185 unplaced-scaffold na na CASGFK010000037.1 = NW_026909818.1 Primary Assembly 1000 na scaffold_94 unplaced-scaffold na na CASGFK010000038.1 = NW_026909819.1 Primary Assembly 35555 na scaffold_52 unplaced-scaffold na na CASGFK010000039.1 = NW_026909820.1 Primary Assembly 141679 na scaffold_134 unplaced-scaffold na na CASGFK010000040.1 = NW_026909821.1 Primary Assembly 19479 na scaffold_183 unplaced-scaffold na na CASGFK010000041.1 = NW_026909822.1 Primary Assembly 1000 na scaffold_165 unplaced-scaffold na na CASGFK010000042.1 = NW_026909823.1 Primary Assembly 14016 na scaffold_116 unplaced-scaffold na na CASGFK010000043.1 = NW_026909824.1 Primary Assembly 23270 na scaffold_98 unplaced-scaffold na na CASGFK010000044.1 = NW_026909825.1 Primary Assembly 32856 na scaffold_145 unplaced-scaffold na na CASGFK010000045.1 = NW_026909826.1 Primary Assembly 17092 na scaffold_81 unplaced-scaffold na na CASGFK010000046.1 = NW_026909827.1 Primary Assembly 50465 na scaffold_158 unplaced-scaffold na na CASGFK010000047.1 = NW_026909828.1 Primary Assembly 15191 na scaffold_172 unplaced-scaffold na na CASGFK010000048.1 = NW_026909829.1 Primary Assembly 10266 na scaffold_151 unplaced-scaffold na na CASGFK010000049.1 = NW_026909830.1 Primary Assembly 16122 na scaffold_65 unplaced-scaffold na na CASGFK010000050.1 = NW_026909831.1 Primary Assembly 76225 na scaffold_104 unplaced-scaffold na na CASGFK010000051.1 = NW_026909832.1 Primary Assembly 28005 na scaffold_51 unplaced-scaffold na na CASGFK010000052.1 = NW_026909833.1 Primary Assembly 143764 na scaffold_108 unplaced-scaffold na na CASGFK010000053.1 = NW_026909834.1 Primary Assembly 24943 na scaffold_46 unplaced-scaffold na na CASGFK010000054.1 = NW_026909835.1 Primary Assembly 166000 na scaffold_97 unplaced-scaffold na na CASGFK010000055.1 = NW_026909836.1 Primary Assembly 33187 na scaffold_25 unplaced-scaffold na na CASGFK010000056.1 = NW_026909837.1 Primary Assembly 1247490 na scaffold_173 unplaced-scaffold na na CASGFK010000057.1 = NW_026909838.1 Primary Assembly 9777 na scaffold_154 unplaced-scaffold na na CASGFK010000058.1 = NW_026909839.1 Primary Assembly 15831 na scaffold_78 unplaced-scaffold na na CASGFK010000059.1 = NW_026909840.1 Primary Assembly 52110 na scaffold_126 unplaced-scaffold na na CASGFK010000060.1 = NW_026909841.1 Primary Assembly 21062 na scaffold_101 unplaced-scaffold na na CASGFK010000061.1 = NW_026909842.1 Primary Assembly 30703 na scaffold_60 unplaced-scaffold na na CASGFK010000062.1 = NW_026909843.1 Primary Assembly 105756 na scaffold_44 unplaced-scaffold na na CASGFK010000063.1 = NW_026909844.1 Primary Assembly 169000 na scaffold_89 unplaced-scaffold na na CASGFK010000064.1 = NW_026909845.1 Primary Assembly 37567 na scaffold_63 unplaced-scaffold na na CASGFK010000065.1 = NW_026909846.1 Primary Assembly 94494 na scaffold_131 unplaced-scaffold na na CASGFK010000066.1 = NW_026909847.1 Primary Assembly 20011 na scaffold_182 unplaced-scaffold na na CASGFK010000067.1 = NW_026909848.1 Primary Assembly 1000 na scaffold_34 unplaced-scaffold na na CASGFK010000068.1 = NW_026909849.1 Primary Assembly 572000 na scaffold_179 unplaced-scaffold na na CASGFK010000069.1 = NW_026909850.1 Primary Assembly 2000 na scaffold_140 unplaced-scaffold na na CASGFK010000070.1 = NW_026909851.1 Primary Assembly 18486 na scaffold_82 unplaced-scaffold na na CASGFK010000071.1 = NW_026909852.1 Primary Assembly 46044 na scaffold_187 unplaced-scaffold na na CASGFK010000072.1 = NW_026909853.1 Primary Assembly 1000 na scaffold_160 unplaced-scaffold na na CASGFK010000073.1 = NW_026909854.1 Primary Assembly 14811 na scaffold_138 unplaced-scaffold na na CASGFK010000074.1 = NW_026909855.1 Primary Assembly 19058 na scaffold_36 unplaced-scaffold na na CASGFK010000075.1 = NW_026909856.1 Primary Assembly 455000 na scaffold_161 unplaced-scaffold na na CASGFK010000076.1 = NW_026909857.1 Primary Assembly 14648 na scaffold_148 unplaced-scaffold na na CASGFK010000077.1 = NW_026909858.1 Primary Assembly 16944 na scaffold_88 unplaced-scaffold na na CASGFK010000078.1 = NW_026909859.1 Primary Assembly 39659 na scaffold_66 unplaced-scaffold na na CASGFK010000079.1 = NW_026909860.1 Primary Assembly 75000 na scaffold_127 unplaced-scaffold na na CASGFK010000080.1 = NW_026909861.1 Primary Assembly 20715 na scaffold_122 unplaced-scaffold na na CASGFK010000081.1 = NW_026909862.1 Primary Assembly 22292 na scaffold_119 unplaced-scaffold na na CASGFK010000082.1 = NW_026909863.1 Primary Assembly 23038 na scaffold_130 unplaced-scaffold na na CASGFK010000083.1 = NW_026909864.1 Primary Assembly 20169 na scaffold_141 unplaced-scaffold na na CASGFK010000084.1 = NW_026909865.1 Primary Assembly 18288 na scaffold_33 unplaced-scaffold na na CASGFK010000085.1 = NW_026909866.1 Primary Assembly 608000 na scaffold_168 unplaced-scaffold na na CASGFK010000086.1 = NW_026909867.1 Primary Assembly 12917 na scaffold_40 unplaced-scaffold na na CASGFK010000087.1 = NW_026909868.1 Primary Assembly 228000 na scaffold_64 unplaced-scaffold na na CASGFK010000088.1 = NW_026909869.1 Primary Assembly 88693 na scaffold_100 unplaced-scaffold na na CASGFK010000089.1 = NW_026909870.1 Primary Assembly 31097 na scaffold_113 unplaced-scaffold na na CASGFK010000090.1 = NW_026909871.1 Primary Assembly 24078 na scaffold_91 unplaced-scaffold na na CASGFK010000091.1 = NW_026909872.1 Primary Assembly 36368 na scaffold_155 unplaced-scaffold na na CASGFK010000092.1 = NW_026909873.1 Primary Assembly 15633 na scaffold_79 unplaced-scaffold na na CASGFK010000093.1 = NW_026909874.1 Primary Assembly 51000 na scaffold_72 unplaced-scaffold na na CASGFK010000094.1 = NW_026909875.1 Primary Assembly 62828 na scaffold_186 unplaced-scaffold na na CASGFK010000095.1 = NW_026909876.1 Primary Assembly 1000 na scaffold_57 unplaced-scaffold na na CASGFK010000096.1 = NW_026909877.1 Primary Assembly 109202 na scaffold_150 unplaced-scaffold na na CASGFK010000097.1 = NW_026909878.1 Primary Assembly 16189 na scaffold_117 unplaced-scaffold na na CASGFK010000098.1 = NW_026909879.1 Primary Assembly 23206 na scaffold_112 unplaced-scaffold na na CASGFK010000099.1 = NW_026909880.1 Primary Assembly 24140 na scaffold_87 unplaced-scaffold na na CASGFK010000100.1 = NW_026909881.1 Primary Assembly 39809 na scaffold_129 unplaced-scaffold na na CASGFK010000101.1 = NW_026909882.1 Primary Assembly 20192 na scaffold_105 unplaced-scaffold na na CASGFK010000102.1 = NW_026909883.1 Primary Assembly 27890 na scaffold_164 unplaced-scaffold na na CASGFK010000103.1 = NW_026909884.1 Primary Assembly 14124 na scaffold_135 unplaced-scaffold na na CASGFK010000104.1 = NW_026909885.1 Primary Assembly 19377 na scaffold_24 unplaced-scaffold na na CASGFK010000105.1 = NW_026909886.1 Primary Assembly 1291544 na scaffold_176 unplaced-scaffold na na CASGFK010000106.1 = NW_026909887.1 Primary Assembly 7086 na scaffold_58 unplaced-scaffold na na CASGFK010000107.1 = NW_026909888.1 Primary Assembly 106078 na scaffold_123 unplaced-scaffold na na CASGFK010000108.1 = NW_026909889.1 Primary Assembly 21620 na scaffold_92 unplaced-scaffold na na CASGFK010000109.1 = NW_026909890.1 Primary Assembly 36182 na scaffold_144 unplaced-scaffold na na CASGFK010000110.1 = NW_026909891.1 Primary Assembly 17200 na scaffold_71 unplaced-scaffold na na CASGFK010000111.1 = NW_026909892.1 Primary Assembly 65365 na scaffold_26 unplaced-scaffold na na CASGFK010000112.1 = NW_026909893.1 Primary Assembly 1083967 na scaffold_99 unplaced-scaffold na na CASGFK010000113.1 = NW_026909894.1 Primary Assembly 31198 na scaffold_28 unplaced-scaffold na na CASGFK010000114.1 = NW_026909895.1 Primary Assembly 945505 na scaffold_93 unplaced-scaffold na na CASGFK010000115.1 = NW_026909896.1 Primary Assembly 35849 na scaffold_54 unplaced-scaffold na na CASGFK010000116.1 = NW_026909897.1 Primary Assembly 117406 na scaffold_125 unplaced-scaffold na na CASGFK010000117.1 = NW_026909898.1 Primary Assembly 21161 na scaffold_56 unplaced-scaffold na na CASGFK010000118.1 = NW_026909899.1 Primary Assembly 109027 na scaffold_109 unplaced-scaffold na na CASGFK010000119.1 = NW_026909900.1 Primary Assembly 24729 na scaffold_184 unplaced-scaffold na na CASGFK010000120.1 = NW_026909901.1 Primary Assembly 1000 na scaffold_75 unplaced-scaffold na na CASGFK010000121.1 = NW_026909902.1 Primary Assembly 58031 na scaffold_133 unplaced-scaffold na na CASGFK010000122.1 = NW_026909903.1 Primary Assembly 19504 na scaffold_157 unplaced-scaffold na na CASGFK010000123.1 = NW_026909904.1 Primary Assembly 15278 na scaffold_103 unplaced-scaffold na na CASGFK010000124.1 = NW_026909905.1 Primary Assembly 28464 na scaffold_139 unplaced-scaffold na na CASGFK010000125.1 = NW_026909906.1 Primary Assembly 18822 na scaffold_110 unplaced-scaffold na na CASGFK010000126.1 = NW_026909907.1 Primary Assembly 24616 na scaffold_171 unplaced-scaffold na na CASGFK010000127.1 = NW_026909908.1 Primary Assembly 10391 na scaffold_152 unplaced-scaffold na na CASGFK010000128.1 = NW_026909909.1 Primary Assembly 16103 na scaffold_31 unplaced-scaffold na na CASGFK010000129.1 = NW_026909910.1 Primary Assembly 754083 na scaffold_67 unplaced-scaffold na na CASGFK010000130.1 = NW_026909911.1 Primary Assembly 74193 na scaffold_178 unplaced-scaffold na na CASGFK010000131.1 = NW_026909912.1 Primary Assembly 5903 na scaffold_90 unplaced-scaffold na na CASGFK010000132.1 = NW_026909913.1 Primary Assembly 37509 na scaffold_166 unplaced-scaffold na na CASGFK010000133.1 = NW_026909914.1 Primary Assembly 13989 na scaffold_102 unplaced-scaffold na na CASGFK010000134.1 = NW_026909915.1 Primary Assembly 30233 na scaffold_174 unplaced-scaffold na na CASGFK010000135.1 = NW_026909916.1 Primary Assembly 9761 na scaffold_107 unplaced-scaffold na na CASGFK010000136.1 = NW_026909917.1 Primary Assembly 26353 na scaffold_73 unplaced-scaffold na na CASGFK010000137.1 = NW_026909918.1 Primary Assembly 61000 na scaffold_153 unplaced-scaffold na na CASGFK010000138.1 = NW_026909919.1 Primary Assembly 15915 na scaffold_42 unplaced-scaffold na na CASGFK010000139.1 = NW_026909920.1 Primary Assembly 215475 na scaffold_115 unplaced-scaffold na na CASGFK010000140.1 = NW_026909921.1 Primary Assembly 23449 na scaffold_95 unplaced-scaffold na na CASGFK010000141.1 = NW_026909922.1 Primary Assembly 34539 na scaffold_146 unplaced-scaffold na na CASGFK010000142.1 = NW_026909923.1 Primary Assembly 16984 na scaffold_49 unplaced-scaffold na na CASGFK010000143.1 = NW_026909924.1 Primary Assembly 151000 na scaffold_84 unplaced-scaffold na na CASGFK010000144.1 = NW_026909925.1 Primary Assembly 45255 na scaffold_188 unplaced-scaffold na na CASGFK010000145.1 = NW_026909926.1 Primary Assembly 1000 na scaffold_120 unplaced-scaffold na na CASGFK010000146.1 = NW_026909927.1 Primary Assembly 22887 na scaffold_159 unplaced-scaffold na na CASGFK010000147.1 = NW_026909928.1 Primary Assembly 15152 na scaffold_70 unplaced-scaffold na na CASGFK010000148.1 = NW_026909929.1 Primary Assembly 67034 na scaffold_137 unplaced-scaffold na na CASGFK010000149.1 = NW_026909930.1 Primary Assembly 19218 na scaffold_86 unplaced-scaffold na na CASGFK010000150.1 = NW_026909931.1 Primary Assembly 42838 na scaffold_68 unplaced-scaffold na na CASGFK010000151.1 = NW_026909932.1 Primary Assembly 72321 na scaffold_181 unplaced-scaffold na na CASGFK010000152.1 = NW_026909933.1 Primary Assembly 2000 na scaffold_132 unplaced-scaffold na na CASGFK010000153.1 = NW_026909934.1 Primary Assembly 19973 na scaffold_MT_1 assembled-molecule MT Mitochondrion OX438562.1 <> na non-nuclear 16574 na