# Assembly name: fSquCep2.1 # Organism name: Squalius cephalus (European chub) # Taxid: 8284 # BioSample: SAMEA11296547 # BioProject: PRJEB60239 # Submitter: WELLCOME SANGER INSTITUTE # Date: 2023-04-08 # Assembly type: haploid (principal pseudohaplotype of diploid) # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CASGGZ01 # Assembly method: various # Genome coverage: 46x # Sequencing technology: PacBio,Arima2 # GenBank assembly accession: GCA_949319135.1 # Linked assembly: GCA_949319155.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_949319134.1 Primary Assembly ## GCA_949319136.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OX439247.1 <> na Primary Assembly 70742303 na SUPER_2 assembled-molecule 2 Chromosome OX439248.1 <> na Primary Assembly 64824395 na SUPER_3 assembled-molecule 3 Chromosome OX439249.1 <> na Primary Assembly 61783970 na SUPER_4 assembled-molecule 4 Chromosome OX439250.1 <> na Primary Assembly 55872136 na SUPER_5 assembled-molecule 5 Chromosome OX439251.1 <> na Primary Assembly 51321259 na SUPER_6 assembled-molecule 6 Chromosome OX439252.1 <> na Primary Assembly 49162881 na SUPER_7 assembled-molecule 7 Chromosome OX439253.1 <> na Primary Assembly 48073428 na SUPER_8 assembled-molecule 8 Chromosome OX439254.1 <> na Primary Assembly 47495150 na SUPER_9 assembled-molecule 9 Chromosome OX439255.1 <> na Primary Assembly 46137648 na SUPER_10 assembled-molecule 10 Chromosome OX439256.1 <> na Primary Assembly 45672686 na SUPER_11 assembled-molecule 11 Chromosome OX439257.1 <> na Primary Assembly 41795634 na SUPER_12 assembled-molecule 12 Chromosome OX439258.1 <> na Primary Assembly 39777222 na SUPER_13 assembled-molecule 13 Chromosome OX439259.1 <> na Primary Assembly 39398959 na SUPER_14 assembled-molecule 14 Chromosome OX439260.1 <> na Primary Assembly 38208450 na SUPER_15 assembled-molecule 15 Chromosome OX439261.1 <> na Primary Assembly 38168245 na SUPER_16 assembled-molecule 16 Chromosome OX439262.1 <> na Primary Assembly 37593234 na SUPER_17 assembled-molecule 17 Chromosome OX439263.1 <> na Primary Assembly 37306196 na SUPER_18 assembled-molecule 18 Chromosome OX439264.1 <> na Primary Assembly 37242670 na SUPER_19 assembled-molecule 19 Chromosome OX439265.1 <> na Primary Assembly 37113640 na SUPER_20 assembled-molecule 20 Chromosome OX439266.1 <> na Primary Assembly 36001966 na SUPER_21 assembled-molecule 21 Chromosome OX439267.1 <> na Primary Assembly 35998302 na SUPER_22 assembled-molecule 22 Chromosome OX439268.1 <> na Primary Assembly 33754728 na SUPER_23 assembled-molecule 23 Chromosome OX439269.1 <> na Primary Assembly 32572997 na SUPER_24 assembled-molecule 24 Chromosome OX439270.1 <> na Primary Assembly 31982984 na SUPER_25 assembled-molecule 25 Chromosome OX439271.1 <> na Primary Assembly 31211700 na scaffold_130 unplaced-scaffold na na CASGGZ010000001.1 <> na Primary Assembly 26791 na scaffold_114 unplaced-scaffold na na CASGGZ010000002.1 <> na Primary Assembly 57000 na scaffold_123 unplaced-scaffold na na CASGGZ010000003.1 <> na Primary Assembly 41810 na scaffold_106 unplaced-scaffold na na CASGGZ010000004.1 <> na Primary Assembly 70920 na scaffold_83 unplaced-scaffold na na CASGGZ010000005.1 <> na Primary Assembly 137448 na scaffold_117 unplaced-scaffold na na CASGGZ010000006.1 <> na Primary Assembly 55881 na scaffold_45 unplaced-scaffold na na CASGGZ010000007.1 <> na Primary Assembly 952330 na scaffold_92 unplaced-scaffold na na CASGGZ010000008.1 <> na Primary Assembly 91746 na scaffold_87 unplaced-scaffold na na CASGGZ010000009.1 <> na Primary Assembly 119322 na scaffold_72 unplaced-scaffold na na CASGGZ010000010.1 <> na Primary Assembly 239000 na scaffold_91 unplaced-scaffold na na CASGGZ010000011.1 <> na Primary Assembly 98455 na scaffold_127 unplaced-scaffold na na CASGGZ010000012.1 <> na Primary Assembly 34440 na scaffold_89 unplaced-scaffold na na CASGGZ010000013.1 <> na Primary Assembly 109000 na scaffold_102 unplaced-scaffold na na CASGGZ010000014.1 <> na Primary Assembly 75765 na scaffold_124 unplaced-scaffold na na CASGGZ010000015.1 <> na Primary Assembly 41775 na scaffold_113 unplaced-scaffold na na CASGGZ010000016.1 <> na Primary Assembly 60049 na scaffold_131 unplaced-scaffold na na CASGGZ010000017.1 <> na Primary Assembly 26000 na scaffold_86 unplaced-scaffold na na CASGGZ010000018.1 <> na Primary Assembly 120481 na scaffold_144 unplaced-scaffold na na CASGGZ010000019.1 <> na Primary Assembly 1000 na scaffold_70 unplaced-scaffold na na CASGGZ010000020.1 <> na Primary Assembly 275000 na scaffold_62 unplaced-scaffold na na CASGGZ010000021.1 <> na Primary Assembly 535876 na scaffold_75 unplaced-scaffold na na CASGGZ010000022.1 <> na Primary Assembly 191847 na scaffold_107 unplaced-scaffold na na CASGGZ010000023.1 <> na Primary Assembly 70747 na scaffold_122 unplaced-scaffold na na CASGGZ010000024.1 <> na Primary Assembly 47325 na scaffold_138 unplaced-scaffold na na CASGGZ010000025.1 <> na Primary Assembly 17139 na scaffold_104 unplaced-scaffold na na CASGGZ010000026.1 <> na Primary Assembly 73000 na scaffold_116 unplaced-scaffold na na CASGGZ010000027.1 <> na Primary Assembly 56000 na scaffold_54 unplaced-scaffold na na CASGGZ010000028.1 <> na Primary Assembly 689984 na scaffold_94 unplaced-scaffold na na CASGGZ010000029.1 <> na Primary Assembly 87891 na scaffold_112 unplaced-scaffold na na CASGGZ010000030.1 <> na Primary Assembly 60100 na scaffold_103 unplaced-scaffold na na CASGGZ010000031.1 <> na Primary Assembly 74841 na scaffold_135 unplaced-scaffold na na CASGGZ010000032.1 <> na Primary Assembly 19098 na scaffold_126 unplaced-scaffold na na CASGGZ010000033.1 <> na Primary Assembly 35618 na scaffold_88 unplaced-scaffold na na CASGGZ010000034.1 <> na Primary Assembly 116275 na scaffold_143 unplaced-scaffold na na CASGGZ010000035.1 <> na Primary Assembly 2000 na scaffold_139 unplaced-scaffold na na CASGGZ010000036.1 <> na Primary Assembly 17109 na scaffold_95 unplaced-scaffold na na CASGGZ010000037.1 <> na Primary Assembly 86000 na scaffold_42 unplaced-scaffold na na CASGGZ010000038.1 <> na Primary Assembly 1008872 na scaffold_90 unplaced-scaffold na na CASGGZ010000039.1 <> na Primary Assembly 102508 na scaffold_101 unplaced-scaffold na na CASGGZ010000040.1 <> na Primary Assembly 76000 na scaffold_81 unplaced-scaffold na na CASGGZ010000041.1 <> na Primary Assembly 147000 na scaffold_73 unplaced-scaffold na na CASGGZ010000042.1 <> na Primary Assembly 217058 na scaffold_97 unplaced-scaffold na na CASGGZ010000043.1 <> na Primary Assembly 84120 na scaffold_57 unplaced-scaffold na na CASGGZ010000044.1 <> na Primary Assembly 625964 na scaffold_137 unplaced-scaffold na na CASGGZ010000045.1 <> na Primary Assembly 17238 na scaffold_108 unplaced-scaffold na na CASGGZ010000046.1 <> na Primary Assembly 70000 na scaffold_110 unplaced-scaffold na na CASGGZ010000047.1 <> na Primary Assembly 62250 na scaffold_134 unplaced-scaffold na na CASGGZ010000048.1 <> na Primary Assembly 19370 na scaffold_99 unplaced-scaffold na na CASGGZ010000049.1 <> na Primary Assembly 80791 na scaffold_141 unplaced-scaffold na na CASGGZ010000050.1 <> na Primary Assembly 16384 na scaffold_37 unplaced-scaffold na na CASGGZ010000051.1 <> na Primary Assembly 2010018 na scaffold_120 unplaced-scaffold na na CASGGZ010000052.1 <> na Primary Assembly 49275 na scaffold_105 unplaced-scaffold na na CASGGZ010000053.1 <> na Primary Assembly 72149 na scaffold_133 unplaced-scaffold na na CASGGZ010000054.1 <> na Primary Assembly 20650 na scaffold_79 unplaced-scaffold na na CASGGZ010000055.1 <> na Primary Assembly 162852 na scaffold_109 unplaced-scaffold na na CASGGZ010000056.1 <> na Primary Assembly 70000 na scaffold_82 unplaced-scaffold na na CASGGZ010000057.1 <> na Primary Assembly 141000 na scaffold_145 unplaced-scaffold na na CASGGZ010000058.1 <> na Primary Assembly 1000 na scaffold_48 unplaced-scaffold na na CASGGZ010000059.1 <> na Primary Assembly 890935 na scaffold_93 unplaced-scaffold na na CASGGZ010000060.1 <> na Primary Assembly 89578 na scaffold_77 unplaced-scaffold na na CASGGZ010000061.1 <> na Primary Assembly 168000 na scaffold_100 unplaced-scaffold na na CASGGZ010000062.1 <> na Primary Assembly 76040 na scaffold_118 unplaced-scaffold na na CASGGZ010000063.1 <> na Primary Assembly 54035 na scaffold_125 unplaced-scaffold na na CASGGZ010000064.1 <> na Primary Assembly 37704 na scaffold_84 unplaced-scaffold na na CASGGZ010000065.1 <> na Primary Assembly 137154 na scaffold_136 unplaced-scaffold na na CASGGZ010000066.1 <> na Primary Assembly 18572 na scaffold_69 unplaced-scaffold na na CASGGZ010000067.1 <> na Primary Assembly 276000 na scaffold_85 unplaced-scaffold na na CASGGZ010000068.1 <> na Primary Assembly 129174 na scaffold_129 unplaced-scaffold na na CASGGZ010000069.1 <> na Primary Assembly 29122 na scaffold_111 unplaced-scaffold na na CASGGZ010000070.1 <> na Primary Assembly 60785 na scaffold_98 unplaced-scaffold na na CASGGZ010000071.1 <> na Primary Assembly 84088 na scaffold_140 unplaced-scaffold na na CASGGZ010000072.1 <> na Primary Assembly 16390 na scaffold_67 unplaced-scaffold na na CASGGZ010000073.1 <> na Primary Assembly 300000 na scaffold_121 unplaced-scaffold na na CASGGZ010000074.1 <> na Primary Assembly 49132 na scaffold_119 unplaced-scaffold na na CASGGZ010000075.1 <> na Primary Assembly 51012 na scaffold_96 unplaced-scaffold na na CASGGZ010000076.1 <> na Primary Assembly 84777 na scaffold_78 unplaced-scaffold na na CASGGZ010000077.1 <> na Primary Assembly 164914 na scaffold_132 unplaced-scaffold na na CASGGZ010000078.1 <> na Primary Assembly 24238 na scaffold_128 unplaced-scaffold na na CASGGZ010000079.1 <> na Primary Assembly 33000 na scaffold_115 unplaced-scaffold na na CASGGZ010000080.1 <> na Primary Assembly 56917 na scaffold_MT_1 assembled-molecule MT Mitochondrion OX439272.1 <> na non-nuclear 16610 na