# Assembly name: mApoAgr2.1 # Organism name: Apodemus agrarius (Eurasian field mouse) # Taxid: 39030 # BioSample: SAMEA112797479 # BioProject: PRJEB74496 # Submitter: Centro Nacional de Análisis Genómico # Date: 2024-04-12 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAXIEO01 # Assembly method: NEXTDENOVO, HYPO, PURGE_DUPS, YAHS # Genome coverage: 70x # Sequencing technology: ONT, Illumina, omniC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_964023405.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964023404.1 Primary Assembly ## GCA_964023406.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name SUPER_1 assembled-molecule 1 Chromosome OZ030005.1 <> na Primary Assembly 200613070 na SUPER_2 assembled-molecule 2 Chromosome OZ030006.1 <> na Primary Assembly 181547069 na SUPER_3 assembled-molecule 3 Chromosome OZ030007.1 <> na Primary Assembly 165098880 na SUPER_4 assembled-molecule 4 Chromosome OZ030008.1 <> na Primary Assembly 164338394 na SUPER_5 assembled-molecule 5 Chromosome OZ030009.1 <> na Primary Assembly 163569161 na SUPER_6 assembled-molecule 6 Chromosome OZ030011.1 <> na Primary Assembly 141709448 na SUPER_7 assembled-molecule 7 Chromosome OZ030012.1 <> na Primary Assembly 126946057 na SUPER_8 assembled-molecule 8 Chromosome OZ030013.1 <> na Primary Assembly 119125257 na SUPER_9 assembled-molecule 9 Chromosome OZ030014.1 <> na Primary Assembly 113335371 na SUPER_10 assembled-molecule 10 Chromosome OZ030015.1 <> na Primary Assembly 109812353 na SUPER_11 assembled-molecule 11 Chromosome OZ030016.1 <> na Primary Assembly 104961612 na SUPER_12 assembled-molecule 12 Chromosome OZ030017.1 <> na Primary Assembly 101851918 na SUPER_13 assembled-molecule 13 Chromosome OZ030018.1 <> na Primary Assembly 89135799 na SUPER_14 assembled-molecule 14 Chromosome OZ030019.1 <> na Primary Assembly 85225104 na SUPER_15 assembled-molecule 15 Chromosome OZ030020.1 <> na Primary Assembly 83414158 na SUPER_16 assembled-molecule 16 Chromosome OZ030021.1 <> na Primary Assembly 83150255 na SUPER_17 assembled-molecule 17 Chromosome OZ030022.1 <> na Primary Assembly 72335404 na SUPER_18 assembled-molecule 18 Chromosome OZ030023.1 <> na Primary Assembly 64734095 na SUPER_19 assembled-molecule 19 Chromosome OZ030024.1 <> na Primary Assembly 62738681 na SUPER_20 assembled-molecule 20 Chromosome OZ030025.1 <> na Primary Assembly 56786709 na SUPER_21 assembled-molecule 21 Chromosome OZ030026.1 <> na Primary Assembly 55600558 na SUPER_22 assembled-molecule 22 Chromosome OZ030027.1 <> na Primary Assembly 50439373 na SUPER_23 assembled-molecule 23 Chromosome OZ030028.1 <> na Primary Assembly 46190208 na SUPER_X assembled-molecule X Chromosome OZ030010.1 <> na Primary Assembly 149661101 na SUPER_Y assembled-molecule Y Chromosome OZ030029.1 <> na Primary Assembly 12387123 na SUPER_1_unloc_1 unlocalized-scaffold 1 Chromosome CAXIEO010000001.1 <> na Primary Assembly 469794 na SUPER_1_unloc_2 unlocalized-scaffold 1 Chromosome CAXIEO010000002.1 <> na Primary Assembly 416000 na SUPER_3_unloc_1 unlocalized-scaffold 3 Chromosome CAXIEO010000003.1 <> na Primary Assembly 306582 na SUPER_3_unloc_2 unlocalized-scaffold 3 Chromosome CAXIEO010000004.1 <> na Primary Assembly 152763 na SUPER_4_unloc_1 unlocalized-scaffold 4 Chromosome CAXIEO010000005.1 <> na Primary Assembly 311389 na SUPER_4_unloc_2 unlocalized-scaffold 4 Chromosome CAXIEO010000006.1 <> na Primary Assembly 198118 na SUPER_5_unloc_1 unlocalized-scaffold 5 Chromosome CAXIEO010000007.1 <> na Primary Assembly 547803 na SUPER_7_unloc_1 unlocalized-scaffold 7 Chromosome CAXIEO010000011.1 <> na Primary Assembly 401888 na SUPER_13_unloc_1 unlocalized-scaffold 13 Chromosome CAXIEO010000012.1 <> na Primary Assembly 449000 na SUPER_13_unloc_2 unlocalized-scaffold 13 Chromosome CAXIEO010000013.1 <> na Primary Assembly 302565 na SUPER_17_unloc_1 unlocalized-scaffold 17 Chromosome CAXIEO010000014.1 <> na Primary Assembly 285031 na SUPER_23_unloc_1 unlocalized-scaffold 23 Chromosome CAXIEO010000015.1 <> na Primary Assembly 218734 na SUPER_X_unloc_1 unlocalized-scaffold X Chromosome CAXIEO010000008.1 <> na Primary Assembly 289275 na SUPER_X_unloc_2 unlocalized-scaffold X Chromosome CAXIEO010000009.1 <> na Primary Assembly 231752 na SUPER_X_unloc_3 unlocalized-scaffold X Chromosome CAXIEO010000010.1 <> na Primary Assembly 226169 na SUPER_Y_unloc_1 unlocalized-scaffold Y Chromosome CAXIEO010000016.1 <> na Primary Assembly 553108 na SUPER_Y_unloc_2 unlocalized-scaffold Y Chromosome CAXIEO010000017.1 <> na Primary Assembly 410473 na SUPER_Y_unloc_3 unlocalized-scaffold Y Chromosome CAXIEO010000018.1 <> na Primary Assembly 389870 na SUPER_Y_unloc_4 unlocalized-scaffold Y Chromosome CAXIEO010000019.1 <> na Primary Assembly 354245 na SUPER_Y_unloc_5 unlocalized-scaffold Y Chromosome CAXIEO010000020.1 <> na Primary Assembly 316071 na SUPER_Y_unloc_6 unlocalized-scaffold Y Chromosome CAXIEO010000021.1 <> na Primary Assembly 246435 na SUPER_Y_unloc_7 unlocalized-scaffold Y Chromosome CAXIEO010000022.1 <> na Primary Assembly 211464 na SUPER_Y_unloc_8 unlocalized-scaffold Y Chromosome CAXIEO010000023.1 <> na Primary Assembly 187691 na SUPER_Y_unloc_9 unlocalized-scaffold Y Chromosome CAXIEO010000024.1 <> na Primary Assembly 170520 na SUPER_Y_unloc_10 unlocalized-scaffold Y Chromosome CAXIEO010000025.1 <> na Primary Assembly 80611 na SUPER_Y_unloc_11 unlocalized-scaffold Y Chromosome CAXIEO010000026.1 <> na Primary Assembly 38598 na SUPER_5_unloc_2 unplaced-scaffold na na CAXIEO010000027.1 <> na Primary Assembly 191882 na scaffold_74 unplaced-scaffold na na CAXIEO010000028.1 <> na Primary Assembly 36800 na scaffold_72 unplaced-scaffold na na CAXIEO010000029.1 <> na Primary Assembly 42911 na SUPER_6_unloc_1 unplaced-scaffold na na CAXIEO010000030.1 <> na Primary Assembly 92457 na scaffold_67 unplaced-scaffold na na CAXIEO010000031.1 <> na Primary Assembly 157037 na SUPER_1_unloc_4 unplaced-scaffold na na CAXIEO010000032.1 <> na Primary Assembly 181768 na scaffold_69 unplaced-scaffold na na CAXIEO010000033.1 <> na Primary Assembly 116020 na SUPER_13_unloc_4 unplaced-scaffold na na CAXIEO010000034.1 <> na Primary Assembly 201938 na scaffold_75 unplaced-scaffold na na CAXIEO010000035.1 <> na Primary Assembly 29098 na mApoAgr2_MT assembled-molecule MT Mitochondrion OZ030030.1 <> na non-nuclear 16262 na