# Assembly name: CAEBRE_CFB2252 # Organism name: Caenorhabditis brenneri (nematodes) # Infraspecific name: strain=CFB2252 # Taxid: 135651 # BioSample: SAMEA115432436 # BioProject: PRJEB72296 # Submitter: University of Oregon, Institute of Ecology and Evolution # Date: 2024-06-06 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: CAXIWG01 # Assembly method: FALCON,Pilon,3D-DNA,Racon, LR_Gapcloser,TGS-GapCloser # Genome coverage: 66x # Sequencing technology: Sequel,Illumina HiSeq 4000 # RefSeq category: Reference Genome # GenBank assembly accession: GCA_964036135.1 # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_964036134.1 Primary Assembly ## GCA_964036136.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name I assembled-molecule I Chromosome OZ038406.1 <> na Primary Assembly 15949836 na II assembled-molecule II Chromosome OZ038407.1 <> na Primary Assembly 17865897 na III assembled-molecule III Chromosome OZ038408.1 <> na Primary Assembly 15980374 na IV assembled-molecule IV Chromosome OZ038409.1 <> na Primary Assembly 24531178 na V assembled-molecule V Chromosome OZ038410.1 <> na Primary Assembly 20836669 na X assembled-molecule X Chromosome OZ038411.1 <> na Primary Assembly 28009396 na HiC_scaffold_102 unplaced-scaffold na na CAXIWG010000001.1 <> na Primary Assembly 21062 na HiC_scaffold_103 unplaced-scaffold na na CAXIWG010000002.1 <> na Primary Assembly 20556 na HiC_scaffold_107 unplaced-scaffold na na CAXIWG010000003.1 <> na Primary Assembly 20269 na HiC_scaffold_108 unplaced-scaffold na na CAXIWG010000004.1 <> na Primary Assembly 19873 na HiC_scaffold_109 unplaced-scaffold na na CAXIWG010000005.1 <> na Primary Assembly 19974 na HiC_scaffold_11 unplaced-scaffold na na CAXIWG010000006.1 <> na Primary Assembly 10452 na HiC_scaffold_111 unplaced-scaffold na na CAXIWG010000007.1 <> na Primary Assembly 18367 na HiC_scaffold_112 unplaced-scaffold na na CAXIWG010000008.1 <> na Primary Assembly 18149 na HiC_scaffold_115 unplaced-scaffold na na CAXIWG010000009.1 <> na Primary Assembly 14173 na HiC_scaffold_116 unplaced-scaffold na na CAXIWG010000010.1 <> na Primary Assembly 13948 na HiC_scaffold_117 unplaced-scaffold na na CAXIWG010000011.1 <> na Primary Assembly 13258 na HiC_scaffold_118 unplaced-scaffold na na CAXIWG010000012.1 <> na Primary Assembly 13829 na HiC_scaffold_120 unplaced-scaffold na na CAXIWG010000013.1 <> na Primary Assembly 12233 na HiC_scaffold_123 unplaced-scaffold na na CAXIWG010000014.1 <> na Primary Assembly 11780 na HiC_scaffold_124 unplaced-scaffold na na CAXIWG010000015.1 <> na Primary Assembly 11660 na HiC_scaffold_125 unplaced-scaffold na na CAXIWG010000016.1 <> na Primary Assembly 10952 na HiC_scaffold_126 unplaced-scaffold na na CAXIWG010000017.1 <> na Primary Assembly 11104 na HiC_scaffold_127 unplaced-scaffold na na CAXIWG010000018.1 <> na Primary Assembly 10831 na HiC_scaffold_128 unplaced-scaffold na na CAXIWG010000019.1 <> na Primary Assembly 9969 na HiC_scaffold_13 unplaced-scaffold na na CAXIWG010000020.1 <> na Primary Assembly 6218 na HiC_scaffold_130 unplaced-scaffold na na CAXIWG010000021.1 <> na Primary Assembly 10111 na HiC_scaffold_131 unplaced-scaffold na na CAXIWG010000022.1 <> na Primary Assembly 9134 na HiC_scaffold_132 unplaced-scaffold na na CAXIWG010000023.1 <> na Primary Assembly 9016 na HiC_scaffold_133 unplaced-scaffold na na CAXIWG010000024.1 <> na Primary Assembly 8826 na HiC_scaffold_135 unplaced-scaffold na na CAXIWG010000025.1 <> na Primary Assembly 8420 na HiC_scaffold_136 unplaced-scaffold na na CAXIWG010000026.1 <> na Primary Assembly 8326 na HiC_scaffold_137 unplaced-scaffold na na CAXIWG010000027.1 <> na Primary Assembly 8313 na HiC_scaffold_138 unplaced-scaffold na na CAXIWG010000028.1 <> na Primary Assembly 8194 na HiC_scaffold_139 unplaced-scaffold na na CAXIWG010000029.1 <> na Primary Assembly 8119 na HiC_scaffold_14 unplaced-scaffold na na CAXIWG010000030.1 <> na Primary Assembly 6587 na HiC_scaffold_141 unplaced-scaffold na na CAXIWG010000031.1 <> na Primary Assembly 7653 na HiC_scaffold_142 unplaced-scaffold na na CAXIWG010000032.1 <> na Primary Assembly 7561 na HiC_scaffold_143 unplaced-scaffold na na CAXIWG010000033.1 <> na Primary Assembly 7630 na HiC_scaffold_144 unplaced-scaffold na na CAXIWG010000034.1 <> na Primary Assembly 7428 na HiC_scaffold_145 unplaced-scaffold na na CAXIWG010000035.1 <> na Primary Assembly 7332 na HiC_scaffold_146 unplaced-scaffold na na CAXIWG010000036.1 <> na Primary Assembly 7346 na HiC_scaffold_147 unplaced-scaffold na na CAXIWG010000037.1 <> na Primary Assembly 7022 na HiC_scaffold_148 unplaced-scaffold na na CAXIWG010000038.1 <> na Primary Assembly 7140 na HiC_scaffold_149 unplaced-scaffold na na CAXIWG010000039.1 <> na Primary Assembly 7083 na HiC_scaffold_15 unplaced-scaffold na na CAXIWG010000040.1 <> na Primary Assembly 4901 na HiC_scaffold_150 unplaced-scaffold na na CAXIWG010000041.1 <> na Primary Assembly 6854 na HiC_scaffold_152 unplaced-scaffold na na CAXIWG010000042.1 <> na Primary Assembly 5855 na HiC_scaffold_153 unplaced-scaffold na na CAXIWG010000043.1 <> na Primary Assembly 6544 na HiC_scaffold_154 unplaced-scaffold na na CAXIWG010000044.1 <> na Primary Assembly 6328 na HiC_scaffold_155 unplaced-scaffold na na CAXIWG010000045.1 <> na Primary Assembly 6028 na HiC_scaffold_156 unplaced-scaffold na na CAXIWG010000046.1 <> na Primary Assembly 5847 na HiC_scaffold_158 unplaced-scaffold na na CAXIWG010000047.1 <> na Primary Assembly 6038 na HiC_scaffold_159 unplaced-scaffold na na CAXIWG010000048.1 <> na Primary Assembly 5909 na HiC_scaffold_16 unplaced-scaffold na na CAXIWG010000049.1 <> na Primary Assembly 20597 na HiC_scaffold_161 unplaced-scaffold na na CAXIWG010000050.1 <> na Primary Assembly 5934 na HiC_scaffold_162 unplaced-scaffold na na CAXIWG010000051.1 <> na Primary Assembly 5471 na HiC_scaffold_163 unplaced-scaffold na na CAXIWG010000052.1 <> na Primary Assembly 5659 na HiC_scaffold_164 unplaced-scaffold na na CAXIWG010000053.1 <> na Primary Assembly 5599 na HiC_scaffold_165 unplaced-scaffold na na CAXIWG010000054.1 <> na Primary Assembly 5468 na HiC_scaffold_167 unplaced-scaffold na na CAXIWG010000055.1 <> na Primary Assembly 4940 na HiC_scaffold_168 unplaced-scaffold na na CAXIWG010000056.1 <> na Primary Assembly 5223 na HiC_scaffold_169 unplaced-scaffold na na CAXIWG010000057.1 <> na Primary Assembly 5219 na HiC_scaffold_17 unplaced-scaffold na na CAXIWG010000058.1 <> na Primary Assembly 17099 na HiC_scaffold_170 unplaced-scaffold na na CAXIWG010000059.1 <> na Primary Assembly 4961 na HiC_scaffold_171 unplaced-scaffold na na CAXIWG010000060.1 <> na Primary Assembly 5049 na HiC_scaffold_172 unplaced-scaffold na na CAXIWG010000061.1 <> na Primary Assembly 4994 na HiC_scaffold_174 unplaced-scaffold na na CAXIWG010000062.1 <> na Primary Assembly 4985 na HiC_scaffold_175 unplaced-scaffold na na CAXIWG010000063.1 <> na Primary Assembly 4742 na HiC_scaffold_176 unplaced-scaffold na na CAXIWG010000064.1 <> na Primary Assembly 4730 na HiC_scaffold_177 unplaced-scaffold na na CAXIWG010000065.1 <> na Primary Assembly 4685 na HiC_scaffold_178 unplaced-scaffold na na CAXIWG010000066.1 <> na Primary Assembly 4623 na HiC_scaffold_179 unplaced-scaffold na na CAXIWG010000067.1 <> na Primary Assembly 4501 na HiC_scaffold_18 unplaced-scaffold na na CAXIWG010000068.1 <> na Primary Assembly 3937 na HiC_scaffold_180 unplaced-scaffold na na CAXIWG010000069.1 <> na Primary Assembly 4410 na HiC_scaffold_181 unplaced-scaffold na na CAXIWG010000070.1 <> na Primary Assembly 4261 na HiC_scaffold_182 unplaced-scaffold na na CAXIWG010000071.1 <> na Primary Assembly 3750 na HiC_scaffold_183 unplaced-scaffold na na CAXIWG010000072.1 <> na Primary Assembly 3942 na HiC_scaffold_184 unplaced-scaffold na na CAXIWG010000073.1 <> na Primary Assembly 4140 na HiC_scaffold_186 unplaced-scaffold na na CAXIWG010000074.1 <> na Primary Assembly 3993 na HiC_scaffold_187 unplaced-scaffold na na CAXIWG010000075.1 <> na Primary Assembly 3952 na HiC_scaffold_188 unplaced-scaffold na na CAXIWG010000076.1 <> na Primary Assembly 3962 na HiC_scaffold_189 unplaced-scaffold na na CAXIWG010000077.1 <> na Primary Assembly 3943 na HiC_scaffold_191 unplaced-scaffold na na CAXIWG010000078.1 <> na Primary Assembly 3918 na HiC_scaffold_192 unplaced-scaffold na na CAXIWG010000079.1 <> na Primary Assembly 3895 na HiC_scaffold_194 unplaced-scaffold na na CAXIWG010000080.1 <> na Primary Assembly 3847 na HiC_scaffold_195 unplaced-scaffold na na CAXIWG010000081.1 <> na Primary Assembly 3773 na HiC_scaffold_196 unplaced-scaffold na na CAXIWG010000082.1 <> na Primary Assembly 3745 na HiC_scaffold_197 unplaced-scaffold na na CAXIWG010000083.1 <> na Primary Assembly 3680 na HiC_scaffold_199 unplaced-scaffold na na CAXIWG010000084.1 <> na Primary Assembly 3650 na HiC_scaffold_200 unplaced-scaffold na na CAXIWG010000085.1 <> na Primary Assembly 3618 na HiC_scaffold_201 unplaced-scaffold na na CAXIWG010000086.1 <> na Primary Assembly 3521 na HiC_scaffold_202 unplaced-scaffold na na CAXIWG010000087.1 <> na Primary Assembly 3511 na HiC_scaffold_204 unplaced-scaffold na na CAXIWG010000088.1 <> na Primary Assembly 3103 na HiC_scaffold_205 unplaced-scaffold na na CAXIWG010000089.1 <> na Primary Assembly 3305 na HiC_scaffold_206 unplaced-scaffold na na CAXIWG010000090.1 <> na Primary Assembly 3269 na HiC_scaffold_209 unplaced-scaffold na na CAXIWG010000091.1 <> na Primary Assembly 3075 na HiC_scaffold_210 unplaced-scaffold na na CAXIWG010000092.1 <> na Primary Assembly 3046 na HiC_scaffold_211 unplaced-scaffold na na CAXIWG010000093.1 <> na Primary Assembly 3035 na HiC_scaffold_213 unplaced-scaffold na na CAXIWG010000094.1 <> na Primary Assembly 2998 na HiC_scaffold_216 unplaced-scaffold na na CAXIWG010000095.1 <> na Primary Assembly 2873 na HiC_scaffold_219 unplaced-scaffold na na CAXIWG010000096.1 <> na Primary Assembly 2685 na HiC_scaffold_22 unplaced-scaffold na na CAXIWG010000097.1 <> na Primary Assembly 31737 na HiC_scaffold_220 unplaced-scaffold na na CAXIWG010000098.1 <> na Primary Assembly 2072 na HiC_scaffold_223 unplaced-scaffold na na CAXIWG010000099.1 <> na Primary Assembly 2447 na HiC_scaffold_228 unplaced-scaffold na na CAXIWG010000100.1 <> na Primary Assembly 2004 na HiC_scaffold_234 unplaced-scaffold na na CAXIWG010000101.1 <> na Primary Assembly 1660 na HiC_scaffold_235 unplaced-scaffold na na CAXIWG010000102.1 <> na Primary Assembly 1582 na HiC_scaffold_24 unplaced-scaffold na na CAXIWG010000103.1 <> na Primary Assembly 112305 na HiC_scaffold_240 unplaced-scaffold na na CAXIWG010000104.1 <> na Primary Assembly 1035 na HiC_scaffold_241 unplaced-scaffold na na CAXIWG010000105.1 <> na Primary Assembly 1442 na HiC_scaffold_242 unplaced-scaffold na na CAXIWG010000106.1 <> na Primary Assembly 1418 na HiC_scaffold_245 unplaced-scaffold na na CAXIWG010000107.1 <> na Primary Assembly 1385 na HiC_scaffold_246 unplaced-scaffold na na CAXIWG010000108.1 <> na Primary Assembly 1337 na HiC_scaffold_247 unplaced-scaffold na na CAXIWG010000109.1 <> na Primary Assembly 1327 na HiC_scaffold_248 unplaced-scaffold na na CAXIWG010000110.1 <> na Primary Assembly 1306 na HiC_scaffold_249 unplaced-scaffold na na CAXIWG010000111.1 <> na Primary Assembly 1289 na HiC_scaffold_250 unplaced-scaffold na na CAXIWG010000112.1 <> na Primary Assembly 1260 na HiC_scaffold_251 unplaced-scaffold na na CAXIWG010000113.1 <> na Primary Assembly 1260 na HiC_scaffold_257 unplaced-scaffold na na CAXIWG010000114.1 <> na Primary Assembly 1050 na HiC_scaffold_258 unplaced-scaffold na na CAXIWG010000115.1 <> na Primary Assembly 1035 na HiC_scaffold_266 unplaced-scaffold na na CAXIWG010000116.1 <> na Primary Assembly 23594 na HiC_scaffold_267 unplaced-scaffold na na CAXIWG010000117.1 <> na Primary Assembly 24268 na HiC_scaffold_268 unplaced-scaffold na na CAXIWG010000118.1 <> na Primary Assembly 24586 na HiC_scaffold_269 unplaced-scaffold na na CAXIWG010000119.1 <> na Primary Assembly 24490 na HiC_scaffold_270 unplaced-scaffold na na CAXIWG010000120.1 <> na Primary Assembly 123294 na HiC_scaffold_271 unplaced-scaffold na na CAXIWG010000121.1 <> na Primary Assembly 46442 na HiC_scaffold_272 unplaced-scaffold na na CAXIWG010000122.1 <> na Primary Assembly 103281 na HiC_scaffold_273 unplaced-scaffold na na CAXIWG010000123.1 <> na Primary Assembly 124243 na HiC_scaffold_274 unplaced-scaffold na na CAXIWG010000124.1 <> na Primary Assembly 122996 na HiC_scaffold_275 unplaced-scaffold na na CAXIWG010000125.1 <> na Primary Assembly 24488 na HiC_scaffold_276 unplaced-scaffold na na CAXIWG010000126.1 <> na Primary Assembly 24496 na HiC_scaffold_277 unplaced-scaffold na na CAXIWG010000127.1 <> na Primary Assembly 24487 na HiC_scaffold_278 unplaced-scaffold na na CAXIWG010000128.1 <> na Primary Assembly 24495 na HiC_scaffold_279 unplaced-scaffold na na CAXIWG010000129.1 <> na Primary Assembly 124565 na HiC_scaffold_280 unplaced-scaffold na na CAXIWG010000130.1 <> na Primary Assembly 124928 na HiC_scaffold_281 unplaced-scaffold na na CAXIWG010000131.1 <> na Primary Assembly 4998 na HiC_scaffold_282 unplaced-scaffold na na CAXIWG010000132.1 <> na Primary Assembly 124037 na HiC_scaffold_283 unplaced-scaffold na na CAXIWG010000133.1 <> na Primary Assembly 24665 na HiC_scaffold_29 unplaced-scaffold na na CAXIWG010000134.1 <> na Primary Assembly 125371 na HiC_scaffold_30 unplaced-scaffold na na CAXIWG010000135.1 <> na Primary Assembly 179310 na HiC_scaffold_31 unplaced-scaffold na na CAXIWG010000136.1 <> na Primary Assembly 119076 na HiC_scaffold_38 unplaced-scaffold na na CAXIWG010000137.1 <> na Primary Assembly 54632 na HiC_scaffold_39 unplaced-scaffold na na CAXIWG010000138.1 <> na Primary Assembly 52730 na HiC_scaffold_40 unplaced-scaffold na na CAXIWG010000139.1 <> na Primary Assembly 52253 na HiC_scaffold_47 unplaced-scaffold na na CAXIWG010000140.1 <> na Primary Assembly 43941 na HiC_scaffold_48 unplaced-scaffold na na CAXIWG010000141.1 <> na Primary Assembly 41310 na HiC_scaffold_55 unplaced-scaffold na na CAXIWG010000142.1 <> na Primary Assembly 38604 na HiC_scaffold_57 unplaced-scaffold na na CAXIWG010000143.1 <> na Primary Assembly 35542 na HiC_scaffold_60 unplaced-scaffold na na CAXIWG010000144.1 <> na Primary Assembly 32829 na HiC_scaffold_65 unplaced-scaffold na na CAXIWG010000145.1 <> na Primary Assembly 31652 na HiC_scaffold_67 unplaced-scaffold na na CAXIWG010000146.1 <> na Primary Assembly 29672 na HiC_scaffold_69 unplaced-scaffold na na CAXIWG010000147.1 <> na Primary Assembly 29219 na HiC_scaffold_70 unplaced-scaffold na na CAXIWG010000148.1 <> na Primary Assembly 27997 na HiC_scaffold_74 unplaced-scaffold na na CAXIWG010000149.1 <> na Primary Assembly 26586 na HiC_scaffold_8 unplaced-scaffold na na CAXIWG010000150.1 <> na Primary Assembly 68670 na HiC_scaffold_81 unplaced-scaffold na na CAXIWG010000151.1 <> na Primary Assembly 26017 na HiC_scaffold_82 unplaced-scaffold na na CAXIWG010000152.1 <> na Primary Assembly 25596 na HiC_scaffold_85 unplaced-scaffold na na CAXIWG010000153.1 <> na Primary Assembly 24997 na HiC_scaffold_86 unplaced-scaffold na na CAXIWG010000154.1 <> na Primary Assembly 24897 na HiC_scaffold_87 unplaced-scaffold na na CAXIWG010000155.1 <> na Primary Assembly 25047 na HiC_scaffold_88 unplaced-scaffold na na CAXIWG010000156.1 <> na Primary Assembly 25002 na HiC_scaffold_89 unplaced-scaffold na na CAXIWG010000157.1 <> na Primary Assembly 24993 na HiC_scaffold_9 unplaced-scaffold na na CAXIWG010000158.1 <> na Primary Assembly 13886 na HiC_scaffold_93 unplaced-scaffold na na CAXIWG010000159.1 <> na Primary Assembly 23570 na HiC_scaffold_95 unplaced-scaffold na na CAXIWG010000160.1 <> na Primary Assembly 22243 na HiC_scaffold_97 unplaced-scaffold na na CAXIWG010000161.1 <> na Primary Assembly 22122 na HiC_scaffold_98 unplaced-scaffold na na CAXIWG010000162.1 <> na Primary Assembly 21708 na HiC_scaffold_99 unplaced-scaffold na na CAXIWG010000163.1 <> na Primary Assembly 21602 na MtDNA assembled-molecule MIT Mitochondrion OZ038412.1 <> na non-nuclear 14613 na